Bi5000 Introduction to bioinformatics

Faculty of Science
Autumn 2004
Extent and Intensity
1/1/0. 2 credit(s) (fasci plus compl plus > 4). Recommended Type of Completion: graded credit. Other types of completion: z (credit).
Teacher(s)
prof. RNDr. Roman Pantůček, Ph.D. (seminar tutor)
RNDr. Ing. Karel Chroust, Ph.D. (seminar tutor)
Guaranteed by
prof. RNDr. Roman Pantůček, Ph.D.
Department of Experimental Biology – Biology Section – Faculty of Science
Contact Person: prof. RNDr. Roman Pantůček, Ph.D.
Timetable
Wed 11:00–12:50 B1,01004
  • Timetable of Seminar Groups:
Bi5000/01: Thu 16:00–16:50 01018, K. Chroust, R. Pantůček
Bi5000/02: Thu 17:00–17:50 01018, K. Chroust, R. Pantůček
Bi5000/03: Thu 18:00–18:50 01018, K. Chroust, R. Pantůček
Prerequisites
Ex_3065 Molekulární biologie || Imp_9115 Molekulární biologie || B3120 Molecular and cell biology || B4030 Molecular biology || B5740 Molecular biology || B6130 Molecular biology || B7940 Molecular biology || B4020 Molecular biology || Bi4020 Molecular biology
Basic course of molecular biology (eg. Bi4020, B4030, B3120 or B7940).
Course Enrolment Limitations
The course is only offered to the students of the study fields the course is directly associated with.
fields of study / plans the course is directly associated with
Course objectives
Cílem kurzu je zvládnutí běžných aplikací potřebných pro zpracování diplomové práce z molekulární biologie, především seznámení posluchačů s informačními službami pro molekulární biologii (molekulárně biologické databáze a nástroje pro jejich využití).
Syllabus
  • Working with MS Windows. Word processors - MS Word. Spreadsheets - MS Excel. Statistical software (examples from general and quantitative genetics). Informational and fact-finding services in computer networks: applications in molecular biology and genetics (Current Contents, Medline). Database searching of nucleic acids and proteins (BLAST, Fasta). Sequence alignments (Blast, ClustalW). Gene finding (GeneMark, Glimmer). Functional genomics. Genome research (human genome, Drosophila, mouse, Saccharomyces, Arabidopsis). Specialized software for molecular biology. Sequence analysis (DNASIS). Analysis of electropherograms (GelCompar).
Literature
  • Viz webová stránka předmětu.
  • Bioinformatics : methods and protocols. Edited by Stephen Misener - Stephen A. Krawetz. Totowa, New Jersey: Humana Press, 2000, xi, 500 s. ISBN 0-86903-732-0. info
  • ATTWOOD, Teresa K. and David J. PARRY-SMITH. Introduction to bioinformatics. 1st pub. Essex: Longman, 1999, xx, 218. ISBN 0582327881. info
  • Bioinformatics : a practical guide to the analysis of genes and proteins. Edited by Andreas D. Baxevanis - Francis B.F. Ouellette. New York: Wiley-Interscience, 1998, xiv, 370 s. ISBN 0-471-19196-5. info
Assessment methods (in Czech)
Výuka probíhá každý týden v počítačové učebně COMPB. Pro ukončení je požadováno zpracování samostatné zápočtové práce dle zadaného tématu.
Language of instruction
Czech
Follow-Up Courses
Further comments (probably available only in Czech)
Study Materials
The course is taught annually.
Information on course enrolment limitations: omezení se vztahuje na 1 hod. cvičení v učebně COMPB, nikoli na přednášku
Listed among pre-requisites of other courses
Teacher's information
http://orion.sci.muni.cz/kgmb/bioinformat/
The course is also listed under the following terms Autumn 2007 - for the purpose of the accreditation, Autumn 2010 - only for the accreditation, Autumn 2002, Autumn 2003, Autumn 2005, Autumn 2006, Autumn 2007, Autumn 2008, Autumn 2009, Autumn 2010, Autumn 2011, Autumn 2011 - acreditation, Autumn 2012, Autumn 2013, Autumn 2014, Autumn 2015, Autumn 2016, autumn 2017, Autumn 2018, Autumn 2019, Autumn 2020, autumn 2021, Autumn 2022, Autumn 2023, Autumn 2024.
  • Enrolment Statistics (Autumn 2004, recent)
  • Permalink: https://is.muni.cz/course/sci/autumn2004/Bi5000