PřF:Bi9061 Bioinformatics - practice - Course Information
Bi9061 Bioinformatics - practice
Faculty of Scienceautumn 2017
- Extent and Intensity
- 0/2/0. 2 credit(s) (plus extra credits for completion). Type of Completion: z (credit).
- Teacher(s)
- prof. RNDr. Roman Pantůček, Ph.D. (seminar tutor)
prof. Mgr. Jiří Damborský, Dr. (seminar tutor)
Mgr. Ivana Mašlaňová, Ph.D. (seminar tutor)
Mgr. Petra Babková (seminar tutor)
Mgr. Pavol Bárdy, Ph.D. (seminar tutor)
Mgr. Tomáš Buryška, Ph.D. (seminar tutor)
Mgr. Jan Dvorský, Ph.D. (seminar tutor)
Mgr. Adéla Finstrlová, Ph.D. (seminar tutor)
Ing. Klaudia Chmelová (seminar tutor)
Mgr. Antonín Kunka, Ph.D. (seminar tutor)
Mgr. Pavel Vaňáček, Ph.D. (seminar tutor)
Mgr. Ondřej Vávra, Ph.D. (seminar tutor)
Mgr. Michal Zeman, Ph.D. (seminar tutor)
Mgr. Martina Damborská (assistant) - Guaranteed by
- prof. Mgr. Jiří Damborský, Dr.
Department of Experimental Biology – Biology Section – Faculty of Science
Contact Person: prof. Mgr. Jiří Damborský, Dr.
Supplier department: Department of Experimental Biology – Biology Section – Faculty of Science - Timetable of Seminar Groups
- Bi9061/01: Mon 18. 9. to Fri 15. 12. Wed 11:00–12:50 B09/316, J. Damborský, R. Pantůček
Bi9061/02: Mon 18. 9. to Fri 15. 12. Wed 13:00–14:50 B09/316, J. Damborský, R. Pantůček
Bi9061/03: Mon 18. 9. to Fri 15. 12. Wed 15:00–16:50 B09/316, J. Damborský, R. Pantůček - Prerequisites (in Czech)
- ( Bi5000 Bioinformatics I && Bi9060 Bioinformatics II ) || ( NOW ( Bi5000 Bioinformatics I ) && NOW ( Bi9060 Bioinformatics II )) && ! C9081 Bioinformatics
- Course Enrolment Limitations
- The course is also offered to the students of the fields other than those the course is directly associated with.
The capacity limit for the course is 70 student(s).
Current registration and enrolment status: enrolled: 0/70, only registered: 0/70, only registered with preference (fields directly associated with the programme): 0/70 - fields of study / plans the course is directly associated with
- there are 6 fields of study the course is directly associated with, display
- Course objectives
- Students will gain practical understanding of several bioinformatic databases and tools commonly used in biological and biochemical research.
- Syllabus
- 1. Bioinformatic databases
- 2. Manipulation with sequence data
- 3. Primer design and restriction analysis
- 4. Pairwise sequence alignment
- 5. Multiple sequence alignment
- 6. Gene prediction
- 7. Protein sequence analysis
- 8. Preparation of nucleotide sequence for database submission
- 9. Structure databases
- 10. Prediction of protein structure
- Literature
- recommended literature
- CLAVERIE, Jean-Michel and Cedric NOTREDAME. Bioinformatics for dummies. 2nd ed. Hoboken, N.J.: Wiley, 2007, xviii, 436. ISBN 9780470089859. info
- Teaching methods
- practice in computer lab
- Assessment methods
- Written test - practical tasks
- Language of instruction
- Czech
- Further Comments
- Study Materials
The course can also be completed outside the examination period.
The course is taught annually. - Listed among pre-requisites of other courses
- Bi5000c Bioinformatics - practice
Bi5000 || NOW(Bi5000) && !Bi9061
- Bi5000c Bioinformatics - practice
- Teacher's information
- http://loschmidt.chemi.muni.cz/bioinf
- Enrolment Statistics (autumn 2017, recent)
- Permalink: https://is.muni.cz/course/sci/autumn2017/Bi9061