Bi6700 Taxonomy of prokaryotes

Faculty of Science
Autumn 2024
Extent and Intensity
3/0/0. 3 credit(s) (fasci plus compl plus > 4). Type of Completion: zk (examination).
Taught in person.
Teacher(s)
prof. RNDr. Ivo Sedláček, CSc. (lecturer)
doc. RNDr. Pavel Švec, Ph.D. (lecturer)
Guaranteed by
prof. RNDr. Ivo Sedláček, CSc.
Department of Experimental Biology – Biology Section – Faculty of Science
Contact Person: Ing. Jiřina Kučerová, Ph.D.
Supplier department: Department of Experimental Biology – Biology Section – Faculty of Science
Prerequisites
C3580 Biochemistry && Bi4020 Molecular biology && Bi4090 General microbiology
Examination - basic microbiology, biochemistry, basic molecular biology.
Course Enrolment Limitations
The course is also offered to the students of the fields other than those the course is directly associated with.
fields of study / plans the course is directly associated with
there are 8 fields of study the course is directly associated with, display
Course objectives
Owing to learned knowledge the course holder is able to use obtained information in bacterial taxonomy and independently interpret acquired data for both typing of bacterial isolates and for identification of unknown samples of prokaryotic microorganisms.
Learning outcomes
At the end of this course, students should be able to identify prokaryotes (domains Archaea and Bacteria) based on their phenothypic properties as well as a phylogenetic position of analysed isolates.
Syllabus
  • Bacterial taxonomy summarises a phylogenetic position of prokaryotic microorganisms (domains Archaea and Bacteria) and defines a concept of systematics (one lecture). Members of domain Archaea are mentioned only in basic features of families and genera (one lecture). The main attention is aimed to representatives of domain Bacteria which are divided in this course into several parts. The first part contains taxonomy of different classes of phylum Proteobacteria (fifth lecture). The second part includes other phyla of Gram negative cocci and rods - aerobic, facultative anaerobic and obligate anaerobic; regular or irregular (three lectures). The last part of lecture is aimed to Gram positive bacteria (phylum Actinobacteria and Firmicutes) - morphologically different prokaryotae, such as mycobacteria, nocardioform or mycelium forming bacteria and sporeforming bacteria (four lectures). At the end of this course, students should be able to apply a obtained phenotype and phylogenetic data for classification of microorganisms or for typing of microorganisms. They could understand a similarity or relationships among species and would be able to explain to intra- or inter-species relationships.
Literature
    required literature
  • SEDLÁČEK, Ivo. Taxonomie prokaryot (Taxonomy of prokaryotes). 1st ed. Brno: Masarykova univerzita, 2007, 270 pp. 55-969C-2006 02/58 12Př. ISBN 80-210-4207-9. info
    recommended literature
  • Euzéby, J.P. 2007. List of prokaryotic names with standing in nomenclature. On-line: http://www.bacterio.cict.fr
  • Garrity, G.M., Boone, D.R., Castenholz, R.W. (eds.). 2001. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume One. The Archaea and the Deeply Branching and Phototrophic Bacteria. Springer, USA.
  • Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005a. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part A Introductory Essays. Springer, USA.
  • Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005b. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part B The Gammaproteobacteria. Springer, USA.
  • Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005c. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part C The Alpha-, Beta-, Delta-,and Epsilonproteobacteria. Springer, USA.
  • Stackebrandt, E. (Ed.) 2006. Molecular Identification, Systematics, and Population Structure of Prokaryotes. Springer, Germany.
  • Priest, F.G., Goodfellow, M. (eds.). 2000. Applied microbial systematics. Kluwer Academic Publisher, Dordrecht, The Netherlands.
Teaching methods
Lectures.
Assessment methods
Discussion in the beginning of each lecture during course, 2 written tests before laboratory course (30 and 50 questions), final oral examination.
Language of instruction
Czech
Follow-Up Courses
Further comments (probably available only in Czech)
The course is taught annually.
The course is taught: every week.
General note: Přednášky budou realizovány online pomocí MS Teams v čase dle rozvrhu.
Information on course enrolment limitations: Limitujici je kapacita cvicebny
Listed among pre-requisites of other courses
The course is also listed under the following terms Autumn 2007 - for the purpose of the accreditation, Autumn 2010 - only for the accreditation, Autumn 2002, Autumn 2003, Autumn 2004, Autumn 2005, Autumn 2006, Autumn 2007, Autumn 2008, Autumn 2009, Autumn 2010, Autumn 2011, Autumn 2011 - acreditation, Autumn 2012, Autumn 2013, Autumn 2014, Autumn 2015, Autumn 2016, autumn 2017, Autumn 2018, Autumn 2019, Autumn 2020, autumn 2021, Autumn 2022, Autumn 2023.

Bi6700 Taxonomy of prokaryotes

Faculty of Science
Autumn 2023
Extent and Intensity
3/0/0. 3 credit(s) (fasci plus compl plus > 4). Type of Completion: zk (examination).
Taught in person.
Teacher(s)
prof. RNDr. Ivo Sedláček, CSc. (lecturer)
Guaranteed by
prof. RNDr. Ivo Sedláček, CSc.
Department of Experimental Biology – Biology Section – Faculty of Science
Contact Person: Ing. Jiřina Kučerová, Ph.D.
Supplier department: Department of Experimental Biology – Biology Section – Faculty of Science
Timetable
Tue 8:00–10:50 E25/209
Prerequisites
C3580 Biochemistry && Bi4020 Molecular biology && Bi4090 General microbiology
Examination - basic microbiology, biochemistry, basic molecular biology.
Course Enrolment Limitations
The course is also offered to the students of the fields other than those the course is directly associated with.
fields of study / plans the course is directly associated with
there are 8 fields of study the course is directly associated with, display
Course objectives
Owing to learned knowledge the course holder is able to use obtained information in bacterial taxonomy and independently interpret acquired data for both typing of bacterial isolates and for identification of unknown samples of prokaryotic microorganisms.
Learning outcomes
At the end of this course, students should be able to identify prokaryotes (domains Archaea and Bacteria) based on their phenothypic properties as well as a phylogenetic position of analysed isolates.
Syllabus
  • Bacterial taxonomy summarises a phylogenetic position of prokaryotic microorganisms (domains Archaea and Bacteria) and defines a concept of systematics (one lecture). Members of domain Archaea are mentioned only in basic features of families and genera (one lecture). The main attention is aimed to representatives of domain Bacteria which are divided in this course into several parts. The first part contains taxonomy of different classes of phylum Proteobacteria (fifth lecture). The second part includes other phyla of Gram negative cocci and rods - aerobic, facultative anaerobic and obligate anaerobic; regular or irregular (three lectures). The last part of lecture is aimed to Gram positive bacteria (phylum Actinobacteria and Firmicutes) - morphologically different prokaryotae, such as mycobacteria, nocardioform or mycelium forming bacteria and sporeforming bacteria (four lectures). At the end of this course, students should be able to apply a obtained phenotype and phylogenetic data for classification of microorganisms or for typing of microorganisms. They could understand a similarity or relationships among species and would be able to explain to intra- or inter-species relationships.
Literature
    required literature
  • SEDLÁČEK, Ivo. Taxonomie prokaryot (Taxonomy of prokaryotes). 1st ed. Brno: Masarykova univerzita, 2007, 270 pp. 55-969C-2006 02/58 12Př. ISBN 80-210-4207-9. info
    recommended literature
  • Euzéby, J.P. 2007. List of prokaryotic names with standing in nomenclature. On-line: http://www.bacterio.cict.fr
  • Garrity, G.M., Boone, D.R., Castenholz, R.W. (eds.). 2001. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume One. The Archaea and the Deeply Branching and Phototrophic Bacteria. Springer, USA.
  • Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005a. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part A Introductory Essays. Springer, USA.
  • Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005b. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part B The Gammaproteobacteria. Springer, USA.
  • Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005c. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part C The Alpha-, Beta-, Delta-,and Epsilonproteobacteria. Springer, USA.
  • Stackebrandt, E. (Ed.) 2006. Molecular Identification, Systematics, and Population Structure of Prokaryotes. Springer, Germany.
  • Priest, F.G., Goodfellow, M. (eds.). 2000. Applied microbial systematics. Kluwer Academic Publisher, Dordrecht, The Netherlands.
Teaching methods
Lectures.
Assessment methods
Discussion in the beginning of each lecture during course, 2 written tests before laboratory course (30 and 50 questions), final oral examination.
Language of instruction
Czech
Follow-Up Courses
Further comments (probably available only in Czech)
Study Materials
The course is taught annually.
General note: Přednášky budou realizovány online pomocí MS Teams v čase dle rozvrhu.
Information on course enrolment limitations: Limitujici je kapacita cvicebny
Listed among pre-requisites of other courses
The course is also listed under the following terms Autumn 2007 - for the purpose of the accreditation, Autumn 2010 - only for the accreditation, Autumn 2002, Autumn 2003, Autumn 2004, Autumn 2005, Autumn 2006, Autumn 2007, Autumn 2008, Autumn 2009, Autumn 2010, Autumn 2011, Autumn 2011 - acreditation, Autumn 2012, Autumn 2013, Autumn 2014, Autumn 2015, Autumn 2016, autumn 2017, Autumn 2018, Autumn 2019, Autumn 2020, autumn 2021, Autumn 2022, Autumn 2024.

Bi6700 Taxonomy of prokaryotes

Faculty of Science
Autumn 2022
Extent and Intensity
3/0/0. 3 credit(s) (fasci plus compl plus > 4). Type of Completion: zk (examination).
Taught in person.
Teacher(s)
prof. RNDr. Ivo Sedláček, CSc. (lecturer)
Guaranteed by
prof. RNDr. Ivo Sedláček, CSc.
Department of Experimental Biology – Biology Section – Faculty of Science
Contact Person: prof. RNDr. Ivo Sedláček, CSc.
Supplier department: Department of Experimental Biology – Biology Section – Faculty of Science
Timetable
Fri 11:00–13:50 E25/209
Prerequisites
C3580 Biochemistry && Bi4020 Molecular biology && Bi4090 General microbiology
Examination - basic microbiology, biochemistry, basic molecular biology.
Course Enrolment Limitations
The course is also offered to the students of the fields other than those the course is directly associated with.
fields of study / plans the course is directly associated with
there are 8 fields of study the course is directly associated with, display
Course objectives
Owing to learned knowledge the course holder is able to use obtained information in bacterial taxonomy and independently interpret acquired data for both typing of bacterial isolates and for identification of unknown samples of prokaryotic microorganisms.
Learning outcomes
At the end of this course, students should be able to identify prokaryotes (domains Archaea and Bacteria) based on their phenothypic properties as well as a phylogenetic position of analysed isolates.
Syllabus
  • Bacterial taxonomy summarises a phylogenetic position of prokaryotic microorganisms (domains Archaea and Bacteria) and defines a concept of systematics (one lecture). Members of domain Archaea are mentioned only in basic features of families and genera (one lecture). The main attention is aimed to representatives of domain Bacteria which are divided in this course into several parts. The first part contains taxonomy of different classes of phylum Proteobacteria (fifth lecture). The second part includes other phyla of Gram negative cocci and rods - aerobic, facultative anaerobic and obligate anaerobic; regular or irregular (three lectures). The last part of lecture is aimed to Gram positive bacteria (phylum Actinobacteria and Firmicutes) - morphologically different prokaryotae, such as mycobacteria, nocardioform or mycelium forming bacteria and sporeforming bacteria (four lectures). At the end of this course, students should be able to apply a obtained phenotype and phylogenetic data for classification of microorganisms or for typing of microorganisms. They could understand a similarity or relationships among species and would be able to explain to intra- or inter-species relationships.
Literature
    required literature
  • SEDLÁČEK, Ivo. Taxonomie prokaryot (Taxonomy of prokaryotes). 1st ed. Brno: Masarykova univerzita, 2007, 270 pp. 55-969C-2006 02/58 12Př. ISBN 80-210-4207-9. info
    recommended literature
  • Euzéby, J.P. 2007. List of prokaryotic names with standing in nomenclature. On-line: http://www.bacterio.cict.fr
  • Garrity, G.M., Boone, D.R., Castenholz, R.W. (eds.). 2001. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume One. The Archaea and the Deeply Branching and Phototrophic Bacteria. Springer, USA.
  • Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005a. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part A Introductory Essays. Springer, USA.
  • Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005b. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part B The Gammaproteobacteria. Springer, USA.
  • Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005c. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part C The Alpha-, Beta-, Delta-,and Epsilonproteobacteria. Springer, USA.
  • Stackebrandt, E. (Ed.) 2006. Molecular Identification, Systematics, and Population Structure of Prokaryotes. Springer, Germany.
  • Priest, F.G., Goodfellow, M. (eds.). 2000. Applied microbial systematics. Kluwer Academic Publisher, Dordrecht, The Netherlands.
Teaching methods
Lectures.
Assessment methods
Discussion in the beginning of each lecture during course, 2 written tests before laboratory course (30 and 50 questions), final oral examination.
Language of instruction
Czech
Follow-Up Courses
Further comments (probably available only in Czech)
Study Materials
The course is taught annually.
General note: Přednášky budou realizovány online pomocí MS Teams v čase dle rozvrhu.
Information on course enrolment limitations: Limitujici je kapacita cvicebny
Listed among pre-requisites of other courses
The course is also listed under the following terms Autumn 2007 - for the purpose of the accreditation, Autumn 2010 - only for the accreditation, Autumn 2002, Autumn 2003, Autumn 2004, Autumn 2005, Autumn 2006, Autumn 2007, Autumn 2008, Autumn 2009, Autumn 2010, Autumn 2011, Autumn 2011 - acreditation, Autumn 2012, Autumn 2013, Autumn 2014, Autumn 2015, Autumn 2016, autumn 2017, Autumn 2018, Autumn 2019, Autumn 2020, autumn 2021, Autumn 2023, Autumn 2024.

Bi6700 Taxonomy of prokaryotes

Faculty of Science
autumn 2021
Extent and Intensity
3/0/0. 3 credit(s) (fasci plus compl plus > 4). Type of Completion: zk (examination).
Taught in person.
Teacher(s)
prof. RNDr. Ivo Sedláček, CSc. (lecturer)
Guaranteed by
prof. RNDr. Ivo Sedláček, CSc.
Department of Experimental Biology – Biology Section – Faculty of Science
Contact Person: prof. RNDr. Ivo Sedláček, CSc.
Supplier department: Department of Experimental Biology – Biology Section – Faculty of Science
Timetable
Tue 13:00–15:50 E25/209
Prerequisites
C3580 Biochemistry && Bi4020 Molecular biology && Bi4090 General microbiology
Examination - basic microbiology, biochemistry, basic molecular biology.
Course Enrolment Limitations
The course is also offered to the students of the fields other than those the course is directly associated with.
fields of study / plans the course is directly associated with
there are 8 fields of study the course is directly associated with, display
Course objectives
Owing to learned knowledge the course holder is able to use obtained information in bacterial taxonomy and independently interpret acquired data for both typing of bacterial isolates and for identification of unknown samples of prokaryotic microorganisms.
Learning outcomes
At the end of this course, students should be able to identify prokaryotes (domains Archaea and Bacteria) based on their phenothypic properties as well as a phylogenetic position of analysed isolates.
Syllabus
  • Bacterial taxonomy summarises a phylogenetic position of prokaryotic microorganisms (domains Archaea and Bacteria) and defines a concept of systematics (one lecture). Members of domain Archaea are mentioned only in basic features of families and genera (one lecture). The main attention is aimed to representatives of domain Bacteria which are divided in this course into several parts. The first part contains taxonomy of different classes of phylum Proteobacteria (fifth lecture). The second part includes other phyla of Gram negative cocci and rods - aerobic, facultative anaerobic and obligate anaerobic; regular or irregular (three lectures). The last part of lecture is aimed to Gram positive bacteria (phylum Actinobacteria and Firmicutes) - morphologically different prokaryotae, such as mycobacteria, nocardioform or mycelium forming bacteria and sporeforming bacteria (four lectures). At the end of this course, students should be able to apply a obtained phenotype and phylogenetic data for classification of microorganisms or for typing of microorganisms. They could understand a similarity or relationships among species and would be able to explain to intra- or inter-species relationships.
Literature
    required literature
  • SEDLÁČEK, Ivo. Taxonomie prokaryot (Taxonomy of prokaryotes). 1st ed. Brno: Masarykova univerzita, 2007, 270 pp. 55-969C-2006 02/58 12Př. ISBN 80-210-4207-9. info
    recommended literature
  • Euzéby, J.P. 2007. List of prokaryotic names with standing in nomenclature. On-line: http://www.bacterio.cict.fr
  • Garrity, G.M., Boone, D.R., Castenholz, R.W. (eds.). 2001. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume One. The Archaea and the Deeply Branching and Phototrophic Bacteria. Springer, USA.
  • Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005a. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part A Introductory Essays. Springer, USA.
  • Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005b. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part B The Gammaproteobacteria. Springer, USA.
  • Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005c. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part C The Alpha-, Beta-, Delta-,and Epsilonproteobacteria. Springer, USA.
  • Stackebrandt, E. (Ed.) 2006. Molecular Identification, Systematics, and Population Structure of Prokaryotes. Springer, Germany.
  • Priest, F.G., Goodfellow, M. (eds.). 2000. Applied microbial systematics. Kluwer Academic Publisher, Dordrecht, The Netherlands.
Teaching methods
Lectures.
Assessment methods
Discussion in the beginning of each lecture during course, 2 written tests before laboratory course (30 and 50 questions), final oral examination.
Language of instruction
Czech
Follow-Up Courses
Further comments (probably available only in Czech)
Study Materials
The course is taught annually.
General note: Přednášky budou realizovány online pomocí MS Teams v čase dle rozvrhu.
Information on course enrolment limitations: Limitujici je kapacita cvicebny
Listed among pre-requisites of other courses
The course is also listed under the following terms Autumn 2007 - for the purpose of the accreditation, Autumn 2010 - only for the accreditation, Autumn 2002, Autumn 2003, Autumn 2004, Autumn 2005, Autumn 2006, Autumn 2007, Autumn 2008, Autumn 2009, Autumn 2010, Autumn 2011, Autumn 2011 - acreditation, Autumn 2012, Autumn 2013, Autumn 2014, Autumn 2015, Autumn 2016, autumn 2017, Autumn 2018, Autumn 2019, Autumn 2020, Autumn 2022, Autumn 2023, Autumn 2024.

Bi6700 Taxonomy of prokaryotes

Faculty of Science
Autumn 2020
Extent and Intensity
3/0/0. 3 credit(s) (fasci plus compl plus > 4). Type of Completion: zk (examination).
Taught online.
Teacher(s)
prof. RNDr. Ivo Sedláček, CSc. (lecturer)
Guaranteed by
prof. RNDr. Ivo Sedláček, CSc.
Department of Experimental Biology – Biology Section – Faculty of Science
Contact Person: prof. RNDr. Ivo Sedláček, CSc.
Supplier department: Department of Experimental Biology – Biology Section – Faculty of Science
Timetable
Tue 13:00–15:50 E25/209
Prerequisites
C3580 Biochemistry && Bi4020 Molecular biology && Bi4090 General microbiology
Examination - basic microbiology, biochemistry, basic molecular biology.
Course Enrolment Limitations
The course is also offered to the students of the fields other than those the course is directly associated with.
fields of study / plans the course is directly associated with
there are 8 fields of study the course is directly associated with, display
Course objectives
Owing to learned knowledge the course holder is able to use obtained information in bacterial taxonomy and independently interpret acquired data for both typing of bacterial isolates and for identification of unknown samples of prokaryotic microorganisms.
Learning outcomes
At the end of this course, students should be able to identify prokaryotes (domains Archaea and Bacteria) based on their phenothypic properties as well as a phylogenetic position of analysed isolates.
Syllabus
  • Bacterial taxonomy summarises a phylogenetic position of prokaryotic microorganisms (domains Archaea and Bacteria) and defines a concept of systematics (one lecture). Members of domain Archaea are mentioned only in basic features of families and genera (one lecture). The main attention is aimed to representatives of domain Bacteria which are divided in this course into several parts. The first part contains taxonomy of different classes of phylum Proteobacteria (fifth lecture). The second part includes other phyla of Gram negative cocci and rods - aerobic, facultative anaerobic and obligate anaerobic; regular or irregular (three lectures). The last part of lecture is aimed to Gram positive bacteria (phylum Actinobacteria and Firmicutes) - morphologically different prokaryotae, such as mycobacteria, nocardioform or mycelium forming bacteria and sporeforming bacteria (four lectures). At the end of this course, students should be able to apply a obtained phenotype and phylogenetic data for classification of microorganisms or for typing of microorganisms. They could understand a similarity or relationships among species and would be able to explain to intra- or inter-species relationships.
Literature
    required literature
  • SEDLÁČEK, Ivo. Taxonomie prokaryot (Taxonomy of prokaryotes). 1st ed. Brno: Masarykova univerzita, 2007, 270 pp. 55-969C-2006 02/58 12Př. ISBN 80-210-4207-9. info
    recommended literature
  • Euzéby, J.P. 2007. List of prokaryotic names with standing in nomenclature. On-line: http://www.bacterio.cict.fr
  • Garrity, G.M., Boone, D.R., Castenholz, R.W. (eds.). 2001. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume One. The Archaea and the Deeply Branching and Phototrophic Bacteria. Springer, USA.
  • Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005a. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part A Introductory Essays. Springer, USA.
  • Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005b. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part B The Gammaproteobacteria. Springer, USA.
  • Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005c. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part C The Alpha-, Beta-, Delta-,and Epsilonproteobacteria. Springer, USA.
  • Stackebrandt, E. (Ed.) 2006. Molecular Identification, Systematics, and Population Structure of Prokaryotes. Springer, Germany.
  • Priest, F.G., Goodfellow, M. (eds.). 2000. Applied microbial systematics. Kluwer Academic Publisher, Dordrecht, The Netherlands.
Teaching methods
Lectures.
Assessment methods
Discussion in the beginning of each lecture during course, 2 written tests before laboratory course (30 and 50 questions), final oral examination.
Language of instruction
Czech
Follow-Up Courses
Further comments (probably available only in Czech)
Study Materials
The course is taught annually.
General note: Přednášky budou realizovány online pomocí MS Teams v čase dle rozvrhu.
Information on course enrolment limitations: Limitujici je kapacita cvicebny
Listed among pre-requisites of other courses
The course is also listed under the following terms Autumn 2007 - for the purpose of the accreditation, Autumn 2010 - only for the accreditation, Autumn 2002, Autumn 2003, Autumn 2004, Autumn 2005, Autumn 2006, Autumn 2007, Autumn 2008, Autumn 2009, Autumn 2010, Autumn 2011, Autumn 2011 - acreditation, Autumn 2012, Autumn 2013, Autumn 2014, Autumn 2015, Autumn 2016, autumn 2017, Autumn 2018, Autumn 2019, autumn 2021, Autumn 2022, Autumn 2023, Autumn 2024.

Bi6700 Taxonomy of prokaryotes

Faculty of Science
Autumn 2019
Extent and Intensity
3/0/0. 3 credit(s) (fasci plus compl plus > 4). Type of Completion: zk (examination).
Teacher(s)
prof. RNDr. Ivo Sedláček, CSc. (lecturer)
Guaranteed by
prof. RNDr. Ivo Sedláček, CSc.
Department of Experimental Biology – Biology Section – Faculty of Science
Contact Person: prof. RNDr. Ivo Sedláček, CSc.
Supplier department: Department of Experimental Biology – Biology Section – Faculty of Science
Timetable
Tue 14:00–16:50 E25/209
Prerequisites
C3580 Biochemistry && Bi4020 Molecular biology && Bi4090 General microbiology
Examination - basic microbiology, biochemistry, basic molecular biology.
Course Enrolment Limitations
The course is also offered to the students of the fields other than those the course is directly associated with.
fields of study / plans the course is directly associated with
there are 8 fields of study the course is directly associated with, display
Course objectives
Owing to learned knowledge the course holder is able to use obtained information in bacterial taxonomy and independently interpret acquired data for both typing of bacterial isolates and for identification of unknown samples of prokaryotic microorganisms.
Learning outcomes
At the end of this course, students should be able to identify prokaryotes (domains Archaea and Bacteria) based on their phenothypic properties as well as a phylogenetic position of analysed isolates.
Syllabus
  • Bacterial taxonomy summarises a phylogenetic position of prokaryotic microorganisms (domains Archaea and Bacteria) and defines a concept of systematics (one lecture). Members of domain Archaea are mentioned only in basic features of families and genera (one lecture). The main attention is aimed to representatives of domain Bacteria which are divided in this course into several parts. The first part contains taxonomy of different classes of phylum Proteobacteria (fifth lecture). The second part includes other phyla of Gram negative cocci and rods - aerobic, facultative anaerobic and obligate anaerobic; regular or irregular (three lectures). The last part of lecture is aimed to Gram positive bacteria (phylum Actinobacteria and Firmicutes) - morphologically different prokaryotae, such as mycobacteria, nocardioform or mycelium forming bacteria and sporeforming bacteria (four lectures). At the end of this course, students should be able to apply a obtained phenotype and phylogenetic data for classification of microorganisms or for typing of microorganisms. They could understand a similarity or relationships among species and would be able to explain to intra- or inter-species relationships.
Literature
    required literature
  • SEDLÁČEK, Ivo. Taxonomie prokaryot (Taxonomy of prokaryotes). 1st ed. Brno: Masarykova univerzita, 2007, 270 pp. 55-969C-2006 02/58 12Př. ISBN 80-210-4207-9. info
    recommended literature
  • Euzéby, J.P. 2007. List of prokaryotic names with standing in nomenclature. On-line: http://www.bacterio.cict.fr
  • Garrity, G.M., Boone, D.R., Castenholz, R.W. (eds.). 2001. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume One. The Archaea and the Deeply Branching and Phototrophic Bacteria. Springer, USA.
  • Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005a. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part A Introductory Essays. Springer, USA.
  • Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005b. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part B The Gammaproteobacteria. Springer, USA.
  • Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005c. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part C The Alpha-, Beta-, Delta-,and Epsilonproteobacteria. Springer, USA.
  • Stackebrandt, E. (Ed.) 2006. Molecular Identification, Systematics, and Population Structure of Prokaryotes. Springer, Germany.
  • Priest, F.G., Goodfellow, M. (eds.). 2000. Applied microbial systematics. Kluwer Academic Publisher, Dordrecht, The Netherlands.
Teaching methods
Lectures.
Assessment methods
Discussion in the beginning of each lecture during course, 2 written tests before laboratory course (30 and 50 questions), final oral examination.
Language of instruction
Czech
Follow-Up Courses
Further comments (probably available only in Czech)
Study Materials
The course is taught annually.
Information on course enrolment limitations: Limitujici je kapacita cvicebny
Listed among pre-requisites of other courses
The course is also listed under the following terms Autumn 2007 - for the purpose of the accreditation, Autumn 2010 - only for the accreditation, Autumn 2002, Autumn 2003, Autumn 2004, Autumn 2005, Autumn 2006, Autumn 2007, Autumn 2008, Autumn 2009, Autumn 2010, Autumn 2011, Autumn 2011 - acreditation, Autumn 2012, Autumn 2013, Autumn 2014, Autumn 2015, Autumn 2016, autumn 2017, Autumn 2018, Autumn 2020, autumn 2021, Autumn 2022, Autumn 2023, Autumn 2024.

Bi6700 Taxonomy of prokaryotes

Faculty of Science
Autumn 2018
Extent and Intensity
3/0/0. 3 credit(s) (fasci plus compl plus > 4). Type of Completion: zk (examination).
Teacher(s)
prof. RNDr. Ivo Sedláček, CSc. (lecturer)
Guaranteed by
prof. RNDr. Ivo Sedláček, CSc.
Department of Experimental Biology – Biology Section – Faculty of Science
Contact Person: prof. RNDr. Ivo Sedláček, CSc.
Supplier department: Department of Experimental Biology – Biology Section – Faculty of Science
Timetable
Mon 17. 9. to Fri 14. 12. Tue 14:00–16:50 E25/209
Prerequisites
C3580 Biochemistry && Bi4020 Molecular biology && Bi4090 General microbiology
Examination - basic microbiology, biochemistry, basic molecular biology.
Course Enrolment Limitations
The course is also offered to the students of the fields other than those the course is directly associated with.
fields of study / plans the course is directly associated with
there are 6 fields of study the course is directly associated with, display
Course objectives
At the end of this course, students should be able to identify prokaryotes (domains Archaea and Bacteria) based on their phylogenetic position. Owing to learned knowledge the course holder is able to use obtained information in bacterial taxonomy and independently interpret acquired data for both typing of bacterial isolates and for identification of unknown samples of prokaryotic microorganisms.
Syllabus
  • Bacterial taxonomy summarises a phylogenetic position of prokaryotic microorganisms (domains Archaea and Bacteria) and defines a concept of systematics (one lecture). Members of domain Archaea are mentioned only in basic features of families and genera (one lecture). The main attention is aimed to representatives of domain Bacteria which are divided in this course into several parts. The first part contains taxonomy of different classes of phylum Proteobacteria (fifth lecture). The second part includes other phyla of Gram negative cocci and rods - aerobic, facultative anaerobic and obligate anaerobic; regular or irregular (three lectures). The last part of lecture is aimed to Gram positive bacteria (phylum Actinobacteria and Firmicutes) - morphologically different prokaryotae, such as mycobacteria, nocardioform or mycelium forming bacteria and sporeforming bacteria (four lectures). At the end of this course, students should be able to apply a obtained phenotype and phylogenetic data for classification of microorganisms or for typing of microorganisms. They could understand a similarity or relationships among species and would be able to explain to intra- or inter-species relationships.
Literature
  • SEDLÁČEK, Ivo. Taxonomie prokaryot (Taxonomy of prokaryotes). 1st ed. Brno: Masarykova univerzita, 2007, 270 pp. 55-969C-2006 02/58 12Př. ISBN 80-210-4207-9. info
  • Euzéby, J.P. 2007. List of prokaryotic names with standing in nomenclature. On-line: http://www.bacterio.cict.fr
  • Garrity, G.M., Boone, D.R., Castenholz, R.W. (eds.). 2001. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume One. The Archaea and the Deeply Branching and Phototrophic Bacteria. Springer, USA.
  • Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005a. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part A Introductory Essays. Springer, USA.
  • Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005b. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part B The Gammaproteobacteria. Springer, USA.
  • Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005c. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part C The Alpha-, Beta-, Delta-,and Epsilonproteobacteria. Springer, USA.
  • Balows, A., Trüper, H.G., Dworkin, M., Harder, W., Schleifer, K.-H. (eds.). 1992. The Prokaryotes: A Handbook on the biology of bacteria: ecophysiology, isolation, identification, applications. 2nd ed. New York: Springer-Verlag.
  • Stackebrandt, E. (Ed.) 2006. Molecular Identification, Systematics, and Population Structure of Prokaryotes. Springer, Germany.
  • Priest, F.G., Goodfellow, M. (eds.). 2000. Applied microbial systematics. Kluwer Academic Publisher, Dordrecht, The Netherlands.
  • Goodfellow M. and O Donnell A.G. : Chemical methods in pracarytic systematics., J.Wilea and sons., N.Y., 1994
Teaching methods
Lectures.
Assessment methods
Discussion in the beginning of each lecture during course, 2 written tests before laboratory course (30 and 50 questions), final oral examination.
Language of instruction
Czech
Follow-Up Courses
Further comments (probably available only in Czech)
The course is taught annually.
Information on course enrolment limitations: Limitujici je kapacita cvicebny
Listed among pre-requisites of other courses
The course is also listed under the following terms Autumn 2007 - for the purpose of the accreditation, Autumn 2010 - only for the accreditation, Autumn 2002, Autumn 2003, Autumn 2004, Autumn 2005, Autumn 2006, Autumn 2007, Autumn 2008, Autumn 2009, Autumn 2010, Autumn 2011, Autumn 2011 - acreditation, Autumn 2012, Autumn 2013, Autumn 2014, Autumn 2015, Autumn 2016, autumn 2017, Autumn 2019, Autumn 2020, autumn 2021, Autumn 2022, Autumn 2023, Autumn 2024.

Bi6700 Taxonomy of prokaryotes

Faculty of Science
autumn 2017
Extent and Intensity
3/0/0. 3 credit(s) (fasci plus compl plus > 4). Type of Completion: zk (examination).
Teacher(s)
prof. RNDr. Ivo Sedláček, CSc. (lecturer)
Guaranteed by
prof. RNDr. Ivo Sedláček, CSc.
Department of Experimental Biology – Biology Section – Faculty of Science
Contact Person: prof. RNDr. Ivo Sedláček, CSc.
Supplier department: Department of Experimental Biology – Biology Section – Faculty of Science
Timetable
Mon 18. 9. to Fri 15. 12. Mon 12:00–14:50 E25/209
Prerequisites
C3580 Biochemistry && Bi4020 Molecular biology && Bi4090 General microbiology
Examination - basic microbiology, biochemistry, basic molecular biology.
Course Enrolment Limitations
The course is also offered to the students of the fields other than those the course is directly associated with.
fields of study / plans the course is directly associated with
there are 6 fields of study the course is directly associated with, display
Course objectives
At the end of this course, students should be able to identify prokaryotes (domains Archaea and Bacteria) based on their phylogenetic position. Owing to learned knowledge the course holder is able to use obtained information in bacterial taxonomy and independently interpret acquired data for both typing of bacterial isolates and for identification of unknown samples of prokaryotic microorganisms.
Syllabus
  • Bacterial taxonomy summarises a phylogenetic position of prokaryotic microorganisms (domains Archaea and Bacteria) and defines a concept of systematics (one lecture). Members of domain Archaea are mentioned only in basic features of families and genera (one lecture). The main attention is aimed to representatives of domain Bacteria which are divided in this course into several parts. The first part contains taxonomy of different classes of phylum Proteobacteria (fifth lecture). The second part includes other phyla of Gram negative cocci and rods - aerobic, facultative anaerobic and obligate anaerobic; regular or irregular (three lectures). The last part of lecture is aimed to Gram positive bacteria (phylum Actinobacteria and Firmicutes) - morphologically different prokaryotae, such as mycobacteria, nocardioform or mycelium forming bacteria and sporeforming bacteria (four lectures). At the end of this course, students should be able to apply a obtained phenotype and phylogenetic data for classification of microorganisms or for typing of microorganisms. They could understand a similarity or relationships among species and would be able to explain to intra- or inter-species relationships.
Literature
  • SEDLÁČEK, Ivo. Taxonomie prokaryot (Taxonomy of prokaryotes). 1st ed. Brno: Masarykova univerzita, 2007, 270 pp. 55-969C-2006 02/58 12Př. ISBN 80-210-4207-9. info
  • Euzéby, J.P. 2007. List of prokaryotic names with standing in nomenclature. On-line: http://www.bacterio.cict.fr
  • Garrity, G.M., Boone, D.R., Castenholz, R.W. (eds.). 2001. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume One. The Archaea and the Deeply Branching and Phototrophic Bacteria. Springer, USA.
  • Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005a. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part A Introductory Essays. Springer, USA.
  • Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005b. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part B The Gammaproteobacteria. Springer, USA.
  • Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005c. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part C The Alpha-, Beta-, Delta-,and Epsilonproteobacteria. Springer, USA.
  • Balows, A., Trüper, H.G., Dworkin, M., Harder, W., Schleifer, K.-H. (eds.). 1992. The Prokaryotes: A Handbook on the biology of bacteria: ecophysiology, isolation, identification, applications. 2nd ed. New York: Springer-Verlag.
  • Stackebrandt, E. (Ed.) 2006. Molecular Identification, Systematics, and Population Structure of Prokaryotes. Springer, Germany.
  • Priest, F.G., Goodfellow, M. (eds.). 2000. Applied microbial systematics. Kluwer Academic Publisher, Dordrecht, The Netherlands.
  • Goodfellow M. and O Donnell A.G. : Chemical methods in pracarytic systematics., J.Wilea and sons., N.Y., 1994
Teaching methods
Lectures.
Assessment methods
Discussion in the beginning of each lecture during course, 2 written tests before laboratory course (30 and 50 questions), final oral examination.
Language of instruction
Czech
Follow-Up Courses
Further comments (probably available only in Czech)
Study Materials
The course is taught annually.
Information on course enrolment limitations: Limitujici je kapacita cvicebny
Listed among pre-requisites of other courses
The course is also listed under the following terms Autumn 2007 - for the purpose of the accreditation, Autumn 2010 - only for the accreditation, Autumn 2002, Autumn 2003, Autumn 2004, Autumn 2005, Autumn 2006, Autumn 2007, Autumn 2008, Autumn 2009, Autumn 2010, Autumn 2011, Autumn 2011 - acreditation, Autumn 2012, Autumn 2013, Autumn 2014, Autumn 2015, Autumn 2016, Autumn 2018, Autumn 2019, Autumn 2020, autumn 2021, Autumn 2022, Autumn 2023, Autumn 2024.

Bi6700 Taxonomy of prokaryotes

Faculty of Science
Autumn 2016
Extent and Intensity
3/0/0. 3 credit(s) (fasci plus compl plus > 4). Type of Completion: zk (examination).
Teacher(s)
prof. RNDr. Ivo Sedláček, CSc. (lecturer)
Guaranteed by
prof. RNDr. Ivo Sedláček, CSc.
Department of Experimental Biology – Biology Section – Faculty of Science
Contact Person: prof. RNDr. Ivo Sedláček, CSc.
Supplier department: Department of Experimental Biology – Biology Section – Faculty of Science
Timetable
Mon 19. 9. to Sun 18. 12. Tue 14:00–16:50 E25/209
Prerequisites
C3580 Biochemistry && Bi4020 Molecular biology && Bi4090 General microbiology
Examination - basic microbiology, biochemistry, basic molecular biology.
Course Enrolment Limitations
The course is also offered to the students of the fields other than those the course is directly associated with.
fields of study / plans the course is directly associated with
there are 6 fields of study the course is directly associated with, display
Course objectives
At the end of this course, students should be able to identify prokaryotes (domains Archaea and Bacteria) based on their phylogenetic position. Owing to learned knowledge the course holder is able to use obtained information in bacterial taxonomy and independently interpret acquired data for both typing of bacterial isolates and for identification of unknown samples of prokaryotic microorganisms.
Syllabus
  • Bacterial taxonomy summarises a phylogenetic position of prokaryotic microorganisms (domains Archaea and Bacteria) and defines a concept of systematics (one lecture). Members of domain Archaea are mentioned only in basic features of families and genera (one lecture). The main attention is aimed to representatives of domain Bacteria which are divided in this course into several parts. The first part contains taxonomy of different classes of phylum Proteobacteria (fifth lecture). The second part includes other phyla of Gram negative cocci and rods - aerobic, facultative anaerobic and obligate anaerobic; regular or irregular (three lectures). The last part of lecture is aimed to Gram positive bacteria (phylum Actinobacteria and Firmicutes) - morphologically different prokaryotae, such as mycobacteria, nocardioform or mycelium forming bacteria and sporeforming bacteria (four lectures). At the end of this course, students should be able to apply a obtained phenotype and phylogenetic data for classification of microorganisms or for typing of microorganisms. They could understand a similarity or relationships among species and would be able to explain to intra- or inter-species relationships.
Literature
  • SEDLÁČEK, Ivo. Taxonomie prokaryot (Taxonomy of prokaryotes). 1st ed. Brno: Masarykova univerzita, 2007, 270 pp. 55-969C-2006 02/58 12Př. ISBN 80-210-4207-9. info
  • Euzéby, J.P. 2007. List of prokaryotic names with standing in nomenclature. On-line: http://www.bacterio.cict.fr
  • Garrity, G.M., Boone, D.R., Castenholz, R.W. (eds.). 2001. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume One. The Archaea and the Deeply Branching and Phototrophic Bacteria. Springer, USA.
  • Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005a. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part A Introductory Essays. Springer, USA.
  • Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005b. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part B The Gammaproteobacteria. Springer, USA.
  • Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005c. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part C The Alpha-, Beta-, Delta-,and Epsilonproteobacteria. Springer, USA.
  • Balows, A., Trüper, H.G., Dworkin, M., Harder, W., Schleifer, K.-H. (eds.). 1992. The Prokaryotes: A Handbook on the biology of bacteria: ecophysiology, isolation, identification, applications. 2nd ed. New York: Springer-Verlag.
  • Stackebrandt, E. (Ed.) 2006. Molecular Identification, Systematics, and Population Structure of Prokaryotes. Springer, Germany.
  • Priest, F.G., Goodfellow, M. (eds.). 2000. Applied microbial systematics. Kluwer Academic Publisher, Dordrecht, The Netherlands.
  • Goodfellow M. and O Donnell A.G. : Chemical methods in pracarytic systematics., J.Wilea and sons., N.Y., 1994
Teaching methods
Lectures.
Assessment methods
Discussion in the beginning of each lecture during course, 2 written tests before laboratory course (30 and 50 questions), final oral examination.
Language of instruction
Czech
Follow-Up Courses
Further comments (probably available only in Czech)
Study Materials
The course is taught annually.
Information on course enrolment limitations: Limitujici je kapacita cvicebny
Listed among pre-requisites of other courses
The course is also listed under the following terms Autumn 2007 - for the purpose of the accreditation, Autumn 2010 - only for the accreditation, Autumn 2002, Autumn 2003, Autumn 2004, Autumn 2005, Autumn 2006, Autumn 2007, Autumn 2008, Autumn 2009, Autumn 2010, Autumn 2011, Autumn 2011 - acreditation, Autumn 2012, Autumn 2013, Autumn 2014, Autumn 2015, autumn 2017, Autumn 2018, Autumn 2019, Autumn 2020, autumn 2021, Autumn 2022, Autumn 2023, Autumn 2024.

Bi6700 Taxonomy of prokaryotes

Faculty of Science
Autumn 2015
Extent and Intensity
3/0/0. 3 credit(s) (fasci plus compl plus > 4). Type of Completion: zk (examination).
Teacher(s)
prof. RNDr. Ivo Sedláček, CSc. (lecturer)
Guaranteed by
prof. RNDr. Ivo Sedláček, CSc.
Department of Experimental Biology – Biology Section – Faculty of Science
Contact Person: prof. RNDr. Ivo Sedláček, CSc.
Supplier department: Department of Experimental Biology – Biology Section – Faculty of Science
Timetable
Tue 14:00–16:50 E25/209
Prerequisites
C3580 Biochemistry && Bi4020 Molecular biology && Bi4090 General microbiology
Examination - basic microbiology, biochemistry, basic molecular biology.
Course Enrolment Limitations
The course is also offered to the students of the fields other than those the course is directly associated with.
fields of study / plans the course is directly associated with
there are 6 fields of study the course is directly associated with, display
Course objectives
At the end of this course, students should be able to identify prokaryotes (domains Archaea and Bacteria) based on their phylogenetic position. Owing to learned knowledge the course holder is able to use obtained information in bacterial taxonomy and independently interpret acquired data for both typing of bacterial isolates and for identification of unknown samples of prokaryotic microorganisms.
Syllabus
  • Bacterial taxonomy summarises a phylogenetic position of prokaryotic microorganisms (domains Archaea and Bacteria) and defines a concept of systematics (one lecture). Members of domain Archaea are mentioned only in basic features of families and genera (one lecture). The main attention is aimed to representatives of domain Bacteria which are divided in this course into several parts. The first part contains taxonomy of different classes of phylum Proteobacteria (fifth lecture). The second part includes other phyla of Gram negative cocci and rods - aerobic, facultative anaerobic and obligate anaerobic; regular or irregular (three lectures). The last part of lecture is aimed to Gram positive bacteria (phylum Actinobacteria and Firmicutes) - morphologically different prokaryotae, such as mycobacteria, nocardioform or mycelium forming bacteria and sporeforming bacteria (four lectures). At the end of this course, students should be able to apply a obtained phenotype and phylogenetic data for classification of microorganisms or for typing of microorganisms. They could understand a similarity or relationships among species and would be able to explain to intra- or inter-species relationships.
Literature
  • SEDLÁČEK, Ivo. Taxonomie prokaryot (Taxonomy of prokaryotes). 1st ed. Brno: Masarykova univerzita, 2007, 270 pp. 55-969C-2006 02/58 12Př. ISBN 80-210-4207-9. info
  • Euzéby, J.P. 2007. List of prokaryotic names with standing in nomenclature. On-line: http://www.bacterio.cict.fr
  • Garrity, G.M., Boone, D.R., Castenholz, R.W. (eds.). 2001. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume One. The Archaea and the Deeply Branching and Phototrophic Bacteria. Springer, USA.
  • Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005a. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part A Introductory Essays. Springer, USA.
  • Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005b. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part B The Gammaproteobacteria. Springer, USA.
  • Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005c. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part C The Alpha-, Beta-, Delta-,and Epsilonproteobacteria. Springer, USA.
  • Balows, A., Trüper, H.G., Dworkin, M., Harder, W., Schleifer, K.-H. (eds.). 1992. The Prokaryotes: A Handbook on the biology of bacteria: ecophysiology, isolation, identification, applications. 2nd ed. New York: Springer-Verlag.
  • Stackebrandt, E. (Ed.) 2006. Molecular Identification, Systematics, and Population Structure of Prokaryotes. Springer, Germany.
  • Priest, F.G., Goodfellow, M. (eds.). 2000. Applied microbial systematics. Kluwer Academic Publisher, Dordrecht, The Netherlands.
  • Goodfellow M. and O Donnell A.G. : Chemical methods in pracarytic systematics., J.Wilea and sons., N.Y., 1994
Teaching methods
Lectures.
Assessment methods
Discussion in the beginning of each lecture during course, 2 written tests before laboratory course (30 and 50 questions), final oral examination.
Language of instruction
Czech
Follow-Up Courses
Further comments (probably available only in Czech)
Study Materials
The course is taught annually.
Information on course enrolment limitations: Limitujici je kapacita cvicebny
Listed among pre-requisites of other courses
The course is also listed under the following terms Autumn 2007 - for the purpose of the accreditation, Autumn 2010 - only for the accreditation, Autumn 2002, Autumn 2003, Autumn 2004, Autumn 2005, Autumn 2006, Autumn 2007, Autumn 2008, Autumn 2009, Autumn 2010, Autumn 2011, Autumn 2011 - acreditation, Autumn 2012, Autumn 2013, Autumn 2014, Autumn 2016, autumn 2017, Autumn 2018, Autumn 2019, Autumn 2020, autumn 2021, Autumn 2022, Autumn 2023, Autumn 2024.

Bi6700 Taxonomy of prokaryotes

Faculty of Science
Autumn 2014
Extent and Intensity
3/0/0. 3 credit(s) (fasci plus compl plus > 4). Type of Completion: zk (examination).
Teacher(s)
prof. RNDr. Ivo Sedláček, CSc. (lecturer)
Guaranteed by
prof. RNDr. Ivo Sedláček, CSc.
Department of Experimental Biology – Biology Section – Faculty of Science
Contact Person: prof. RNDr. Ivo Sedláček, CSc.
Supplier department: Department of Experimental Biology – Biology Section – Faculty of Science
Timetable
Tue 14:00–16:50 E25/209
Prerequisites
C3580 Biochemistry && Bi4020 Molecular biology && Bi4090 General microbiology
Examination - basic microbiology, biochemistry, basic molecular biology.
Course Enrolment Limitations
The course is also offered to the students of the fields other than those the course is directly associated with.
fields of study / plans the course is directly associated with
there are 6 fields of study the course is directly associated with, display
Course objectives
At the end of this course, students should be able to identify prokaryotes (domains Archaea and Bacteria) based on their phylogenetic position. Owing to learned knowledge the course holder is able to use obtained information in bacterial taxonomy and independently interpret acquired data for both typing of bacterial isolates and for identification of unknown samples of prokaryotic microorganisms.
Syllabus
  • Bacterial taxonomy summarises a phylogenetic position of prokaryotic microorganisms (domains Archaea and Bacteria) and defines a concept of systematics (one lecture). Members of domain Archaea are mentioned only in basic features of families and genera (one lecture). The main attention is aimed to representatives of domain Bacteria which are divided in this course into several parts. The first part contains taxonomy of different classes of phylum Proteobacteria (fifth lecture). The second part includes other phyla of Gram negative cocci and rods - aerobic, facultative anaerobic and obligate anaerobic; regular or irregular (three lectures). The last part of lecture is aimed to Gram positive bacteria (phylum Actinobacteria and Firmicutes) - morphologically different prokaryotae, such as mycobacteria, nocardioform or mycelium forming bacteria and sporeforming bacteria (four lectures). At the end of this course, students should be able to apply a obtained phenotype and phylogenetic data for classification of microorganisms or for typing of microorganisms. They could understand a similarity or relationships among species and would be able to explain to intra- or inter-species relationships.
Literature
  • SEDLÁČEK, Ivo. Taxonomie prokaryot (Taxonomy of prokaryotes). 1st ed. Brno: Masarykova univerzita, 2007, 270 pp. 55-969C-2006 02/58 12Př. ISBN 80-210-4207-9. info
  • Euzéby, J.P. 2007. List of prokaryotic names with standing in nomenclature. On-line: http://www.bacterio.cict.fr
  • Garrity, G.M., Boone, D.R., Castenholz, R.W. (eds.). 2001. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume One. The Archaea and the Deeply Branching and Phototrophic Bacteria. Springer, USA.
  • Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005a. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part A Introductory Essays. Springer, USA.
  • Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005b. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part B The Gammaproteobacteria. Springer, USA.
  • Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005c. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part C The Alpha-, Beta-, Delta-,and Epsilonproteobacteria. Springer, USA.
  • Balows, A., Trüper, H.G., Dworkin, M., Harder, W., Schleifer, K.-H. (eds.). 1992. The Prokaryotes: A Handbook on the biology of bacteria: ecophysiology, isolation, identification, applications. 2nd ed. New York: Springer-Verlag.
  • Stackebrandt, E. (Ed.) 2006. Molecular Identification, Systematics, and Population Structure of Prokaryotes. Springer, Germany.
  • Priest, F.G., Goodfellow, M. (eds.). 2000. Applied microbial systematics. Kluwer Academic Publisher, Dordrecht, The Netherlands.
  • Goodfellow M. and O Donnell A.G. : Chemical methods in pracarytic systematics., J.Wilea and sons., N.Y., 1994
Teaching methods
Lectures.
Assessment methods
Discussion in the beginning of each lecture during course, 2 written tests before laboratory course (30 and 50 questions), final oral examination.
Language of instruction
Czech
Follow-Up Courses
Further comments (probably available only in Czech)
Study Materials
The course is taught annually.
Information on course enrolment limitations: Limitujici je kapacita cvicebny
Listed among pre-requisites of other courses
The course is also listed under the following terms Autumn 2007 - for the purpose of the accreditation, Autumn 2010 - only for the accreditation, Autumn 2002, Autumn 2003, Autumn 2004, Autumn 2005, Autumn 2006, Autumn 2007, Autumn 2008, Autumn 2009, Autumn 2010, Autumn 2011, Autumn 2011 - acreditation, Autumn 2012, Autumn 2013, Autumn 2015, Autumn 2016, autumn 2017, Autumn 2018, Autumn 2019, Autumn 2020, autumn 2021, Autumn 2022, Autumn 2023, Autumn 2024.

Bi6700 Taxonomy of prokaryotes

Faculty of Science
Autumn 2013
Extent and Intensity
3/0/0. 3 credit(s) (fasci plus compl plus > 4). Type of Completion: zk (examination).
Teacher(s)
prof. RNDr. Ivo Sedláček, CSc. (lecturer)
Guaranteed by
prof. RNDr. Ivo Sedláček, CSc.
Department of Experimental Biology – Biology Section – Faculty of Science
Contact Person: prof. RNDr. Ivo Sedláček, CSc.
Supplier department: Department of Experimental Biology – Biology Section – Faculty of Science
Timetable
Tue 10:00–12:50 Bpt,01013
Prerequisites
C3580 Biochemistry && Bi4020 Molecular biology && Bi4090 General microbiology
Examination - basic microbiology, biochemistry, basic molecular biology.
Course Enrolment Limitations
The course is also offered to the students of the fields other than those the course is directly associated with.
fields of study / plans the course is directly associated with
there are 6 fields of study the course is directly associated with, display
Course objectives
At the end of this course, students should be able to identify prokaryotes (domains Archaea and Bacteria) based on their phylogenetic position. Owing to learned knowledge the course holder is able to use obtained information in bacterial taxonomy and independently interpret acquired data for both typing of bacterial isolates and for identification of unknown samples of prokaryotic microorganisms.
Syllabus
  • Bacterial taxonomy summarises a phylogenetic position of prokaryotic microorganisms (domains Archaea and Bacteria) and defines a concept of systematics (one lecture). Members of domain Archaea are mentioned only in basic features of families and genera (one lecture). The main attention is aimed to representatives of domain Bacteria which are divided in this course into several parts. The first part contains taxonomy of different classes of phylum Proteobacteria (fifth lecture). The second part includes other phyla of Gram negative cocci and rods - aerobic, facultative anaerobic and obligate anaerobic; regular or irregular (three lectures). The last part of lecture is aimed to Gram positive bacteria (phylum Actinobacteria and Firmicutes) - morphologically different prokaryotae, such as mycobacteria, nocardioform or mycelium forming bacteria and sporeforming bacteria (four lectures). At the end of this course, students should be able to apply a obtained phenotype and phylogenetic data for classification of microorganisms or for typing of microorganisms. They could understand a similarity or relationships among species and would be able to explain to intra- or inter-species relationships.
Literature
  • SEDLÁČEK, Ivo. Taxonomie prokaryot (Taxonomy of prokaryotes). 1st ed. Brno: Masarykova univerzita, 2007, 270 pp. 55-969C-2006 02/58 12Př. ISBN 80-210-4207-9. info
  • Euzéby, J.P. 2007. List of prokaryotic names with standing in nomenclature. On-line: http://www.bacterio.cict.fr
  • Garrity, G.M., Boone, D.R., Castenholz, R.W. (eds.). 2001. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume One. The Archaea and the Deeply Branching and Phototrophic Bacteria. Springer, USA.
  • Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005a. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part A Introductory Essays. Springer, USA.
  • Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005b. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part B The Gammaproteobacteria. Springer, USA.
  • Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005c. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part C The Alpha-, Beta-, Delta-,and Epsilonproteobacteria. Springer, USA.
  • Balows, A., Trüper, H.G., Dworkin, M., Harder, W., Schleifer, K.-H. (eds.). 1992. The Prokaryotes: A Handbook on the biology of bacteria: ecophysiology, isolation, identification, applications. 2nd ed. New York: Springer-Verlag.
  • Stackebrandt, E. (Ed.) 2006. Molecular Identification, Systematics, and Population Structure of Prokaryotes. Springer, Germany.
  • Priest, F.G., Goodfellow, M. (eds.). 2000. Applied microbial systematics. Kluwer Academic Publisher, Dordrecht, The Netherlands.
  • Goodfellow M. and O Donnell A.G. : Chemical methods in pracarytic systematics., J.Wilea and sons., N.Y., 1994
Teaching methods
Lectures.
Assessment methods
Discussion in the beginning of each lecture during course, 2 written tests before laboratory course (30 and 50 questions), final oral examination.
Language of instruction
Czech
Follow-Up Courses
Further comments (probably available only in Czech)
Study Materials
The course is taught annually.
Information on course enrolment limitations: Limitujici je kapacita cvicebny
Listed among pre-requisites of other courses
The course is also listed under the following terms Autumn 2007 - for the purpose of the accreditation, Autumn 2010 - only for the accreditation, Autumn 2002, Autumn 2003, Autumn 2004, Autumn 2005, Autumn 2006, Autumn 2007, Autumn 2008, Autumn 2009, Autumn 2010, Autumn 2011, Autumn 2011 - acreditation, Autumn 2012, Autumn 2014, Autumn 2015, Autumn 2016, autumn 2017, Autumn 2018, Autumn 2019, Autumn 2020, autumn 2021, Autumn 2022, Autumn 2023, Autumn 2024.

Bi6700 Taxonomy of prokaryotes

Faculty of Science
Autumn 2012
Extent and Intensity
3/0/0. 3 credit(s) (fasci plus compl plus > 4). Type of Completion: zk (examination).
Teacher(s)
prof. RNDr. Ivo Sedláček, CSc. (lecturer)
Guaranteed by
prof. RNDr. Ivo Sedláček, CSc.
Department of Experimental Biology – Biology Section – Faculty of Science
Contact Person: prof. RNDr. Ivo Sedláček, CSc.
Supplier department: Department of Experimental Biology – Biology Section – Faculty of Science
Timetable
Tue 10:00–12:50 Bpt,01013
Prerequisites
C3580 Biochemistry && Bi4020 Molecular biology && Bi4090 General microbiology
Examination - basic microbiology, biochemistry, basic molecular biology.
Course Enrolment Limitations
The course is also offered to the students of the fields other than those the course is directly associated with.
fields of study / plans the course is directly associated with
there are 6 fields of study the course is directly associated with, display
Course objectives
At the end of this course, students should be able to identified prokaryotes (domains Archaea and Bacteria) based on their phylogenetic position. Owing to learned knowledges the course holder is able to use obtained information in bacterial taxonomy and independently interpret acquired data for both typing of bacterial isolates and for identification of unknown samples of prokaryotic microorganisms.
Syllabus
  • Bacterial taxonomy summarises a phylogenetic position of prokaryotic microorganisms (domains Archaea and Bacteria) and defines a concept of systematic (one lecture). Menbers of domain Archaea are mentioned only in basic features of families and genera (one lecture). The main attention is aimed to representatives of domain Bacteria which are divided in this course into several parts. The first part contains taxonomy of different classes of phylum Proteobacteria (fifth lectures). The second part includes other phyla of Gram negative cocci and rods - aerobic, facultative anaerobic and obligate anaerobic; regular or irregular (three lectures). The last part of lecture is aimed to Gram positive bacteria (phylum Actinobacteria and Firmicutes) - morphologically different prokaryotae, such as mycobacteria, nokardioform or mycelium forming bacteria and sporeforming bacteria (four lectures). At the end of this course, students should be able to apply a obtained phenotypic and phylogenetic data for classification of microorganisms or for typing of microorganisms. They could understand a similarity or relaionships among species and would be able to explain to intra- or inter-species relationships.
Literature
  • SEDLÁČEK, Ivo. Taxonomie prokaryot (Taxonomy of prokaryotes). 1st ed. Brno: Masarykova univerzita, 2007, 270 pp. 55-969C-2006 02/58 12Př. ISBN 80-210-4207-9. info
  • Euzéby, J.P. 2007. List of prokaryotic names with standing in nomenclature. On-line: http://www.bacterio.cict.fr
  • Garrity, G.M., Boone, D.R., Castenholz, R.W. (eds.). 2001. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume One. The Archaea and the Deeply Branching and Phototrophic Bacteria. Springer, USA.
  • Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005a. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part A Introductory Essays. Springer, USA.
  • Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005b. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part B The Gammaproteobacteria. Springer, USA.
  • Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005c. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part C The Alpha-, Beta-, Delta-,and Epsilonproteobacteria. Springer, USA.
  • Balows, A., Trüper, H.G., Dworkin, M., Harder, W., Schleifer, K.-H. (eds.). 1992. The Prokaryotes: A Handbook on the biology of bacteria: ecophysiology, isolation, identification, applications. 2nd ed. New York: Springer-Verlag.
  • Stackebrandt, E. (Ed.) 2006. Molecular Identification, Systematics, and Population Structure of Prokaryotes. Springer, Germany.
  • Priest, F.G., Goodfellow, M. (eds.). 2000. Applied microbial systematics. Kluwer Academic Publisher, Dordrecht, The Netherlands.
  • Goodfellow M. and O Donnell A.G. : Chemical methods in pracarytic systematics., J.Wilea and sons., N.Y., 1994
Teaching methods
Lectures.
Assessment methods
Discusse in the begining of each lecture during course, 2 written tests before laboratory course (30 and 50 questions), final oral examination.
Language of instruction
Czech
Follow-Up Courses
Further comments (probably available only in Czech)
Study Materials
The course is taught annually.
Information on course enrolment limitations: Limitujici je kapacita cvicebny
Listed among pre-requisites of other courses
The course is also listed under the following terms Autumn 2007 - for the purpose of the accreditation, Autumn 2010 - only for the accreditation, Autumn 2002, Autumn 2003, Autumn 2004, Autumn 2005, Autumn 2006, Autumn 2007, Autumn 2008, Autumn 2009, Autumn 2010, Autumn 2011, Autumn 2011 - acreditation, Autumn 2013, Autumn 2014, Autumn 2015, Autumn 2016, autumn 2017, Autumn 2018, Autumn 2019, Autumn 2020, autumn 2021, Autumn 2022, Autumn 2023, Autumn 2024.

Bi6700 Taxonomy of prokaryotes

Faculty of Science
Autumn 2011
Extent and Intensity
4/0/0. 4 credit(s) (plus extra credits for completion). Type of Completion: zk (examination).
Teacher(s)
prof. RNDr. Ivo Sedláček, CSc. (lecturer)
Guaranteed by
prof. RNDr. Ivo Sedláček, CSc.
Department of Experimental Biology – Biology Section – Faculty of Science
Contact Person: prof. RNDr. Ivo Sedláček, CSc.
Timetable
Tue 14:00–16:50 Bpt,01013
Prerequisites
C3580 Biochemistry && Bi4020 Molecular biology && Bi4090 General microbiology
Examination - basic microbiology, biochemistry, basic molecular biology.
Course Enrolment Limitations
The course is also offered to the students of the fields other than those the course is directly associated with.
fields of study / plans the course is directly associated with
there are 6 fields of study the course is directly associated with, display
Course objectives
At the end of this course, students should be able to identified prokaryotes (domains Archaea and Bacteria) based on their phylogenetic position. Owing to learned knowledges the course holder is able to use obtained information in bacterial taxonomy and independently interpret acquired data for both typing of bacterial isolates and for identification of unknown samples of prokaryotic microorganisms.
Syllabus
  • Bacterial taxonomy summarises a phylogenetic position of prokaryotic microorganisms (domains Archaea and Bacteria) and defines a concept of systematic (one lecture). Menbers of domain Archaea are mentioned only in basic features of families and genera (one lecture). The main attention is aimed to representatives of domain Bacteria which are divided in this course into several parts. The first part contains taxonomy of different classes of phylum Proteobacteria (fifth lectures). The second part includes other phyla of Gram negative cocci and rods - aerobic, facultative anaerobic and obligate anaerobic; regular or irregular (three lectures). The last part of lecture is aimed to Gram positive bacteria (phylum Actinobacteria and Firmicutes) - morphologically different prokaryotae, such as mycobacteria, nokardioform or mycelium forming bacteria and sporeforming bacteria (four lectures). At the end of this course, students should be able to apply a obtained phenotypic and phylogenetic data for classification of microorganisms or for typing of microorganisms. They could understand a similarity or relaionships among species and would be able to explain to intra- or inter-species relationships.
Literature
  • SEDLÁČEK, Ivo. Taxonomie prokaryot (Taxonomy of prokaryotes). 1st ed. Brno: Masarykova univerzita, 2007, 270 pp. 55-969C-2006 02/58 12Př. ISBN 80-210-4207-9. info
  • Euzéby, J.P. 2007. List of prokaryotic names with standing in nomenclature. On-line: http://www.bacterio.cict.fr
  • Garrity, G.M., Boone, D.R., Castenholz, R.W. (eds.). 2001. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume One. The Archaea and the Deeply Branching and Phototrophic Bacteria. Springer, USA.
  • Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005a. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part A Introductory Essays. Springer, USA.
  • Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005b. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part B The Gammaproteobacteria. Springer, USA.
  • Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005c. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part C The Alpha-, Beta-, Delta-,and Epsilonproteobacteria. Springer, USA.
  • Balows, A., Trüper, H.G., Dworkin, M., Harder, W., Schleifer, K.-H. (eds.). 1992. The Prokaryotes: A Handbook on the biology of bacteria: ecophysiology, isolation, identification, applications. 2nd ed. New York: Springer-Verlag.
  • Stackebrandt, E. (Ed.) 2006. Molecular Identification, Systematics, and Population Structure of Prokaryotes. Springer, Germany.
  • Priest, F.G., Goodfellow, M. (eds.). 2000. Applied microbial systematics. Kluwer Academic Publisher, Dordrecht, The Netherlands.
  • Goodfellow M. and O Donnell A.G. : Chemical methods in pracarytic systematics., J.Wilea and sons., N.Y., 1994
Teaching methods
Lectures.
Assessment methods
Discusse in the begining of each lecture during course, 2 written tests before laboratory course (30 and 50 questions), final oral examination.
Language of instruction
Czech
Follow-Up Courses
Further comments (probably available only in Czech)
Study Materials
The course is taught annually.
Information on course enrolment limitations: Limitujici je kapacita cvicebny
Listed among pre-requisites of other courses
The course is also listed under the following terms Autumn 2007 - for the purpose of the accreditation, Autumn 2010 - only for the accreditation, Autumn 2002, Autumn 2003, Autumn 2004, Autumn 2005, Autumn 2006, Autumn 2007, Autumn 2008, Autumn 2009, Autumn 2010, Autumn 2011 - acreditation, Autumn 2012, Autumn 2013, Autumn 2014, Autumn 2015, Autumn 2016, autumn 2017, Autumn 2018, Autumn 2019, Autumn 2020, autumn 2021, Autumn 2022, Autumn 2023, Autumn 2024.

Bi6700 Taxonomy of prokaryotes

Faculty of Science
Autumn 2010
Extent and Intensity
4/0/0. 4 credit(s) (plus extra credits for completion). Type of Completion: zk (examination).
Teacher(s)
prof. RNDr. Ivo Sedláček, CSc. (lecturer)
Guaranteed by
prof. RNDr. Ivo Sedláček, CSc.
Department of Experimental Biology – Biology Section – Faculty of Science
Contact Person: prof. RNDr. Ivo Sedláček, CSc.
Timetable
Wed 8:00–11:50 Bpt,01013
Prerequisites
C3580 Biochemistry && Bi4020 Molecular biology && Bi4090 General microbiology
Examination - basic microbiology, biochemistry, basic molecular biology.
Course Enrolment Limitations
The course is also offered to the students of the fields other than those the course is directly associated with.
fields of study / plans the course is directly associated with
Course objectives
At the end of this course, students should be able to identified prokaryotes (domains Archaea and Bacteria) based on their phylogenetic position. Owing to learned knowledges the course holder is able to use obtained information in bacterial taxonomy and independently interpret acquired data for both typing of bacterial isolates and for identification of unknown samples of prokaryotic microorganisms.
Syllabus
  • Bacterial taxonomy summarises a phylogenetic position of prokaryotic microorganisms (domains Archaea and Bacteria) and defines a concept of systematic (one lecture). Menbers of domain Archaea are mentioned only in basic features of families and genera (one lecture). The main attention is aimed to representatives of domain Bacteria which are divided in this course into several parts. The first part contains taxonomy of different classes of phylum Proteobacteria (fifth lectures). The second part includes other phyla of Gram negative cocci and rods - aerobic, facultative anaerobic and obligate anaerobic; regular or irregular (three lectures). The last part of lecture is aimed to Gram positive bacteria (phylum Actinobacteria and Firmicutes) - morphologically different prokaryotae, such as mycobacteria, nokardioform or mycelium forming bacteria and sporeforming bacteria (four lectures). At the end of this course, students should be able to apply a obtained phenotypic and phylogenetic data for classification of microorganisms or for typing of microorganisms. They could understand a similarity or relaionships among species and would be able to explain to intra- or inter-species relationships.
Literature
  • SEDLÁČEK, Ivo. Taxonomie prokaryot (Taxonomy of prokaryotes). 1st ed. Brno: Masarykova univerzita, 2007, 270 pp. 55-969C-2006 02/58 12Př. ISBN 80-210-4207-9. info
  • Euzéby, J.P. 2007. List of prokaryotic names with standing in nomenclature. On-line: http://www.bacterio.cict.fr
  • Garrity, G.M., Boone, D.R., Castenholz, R.W. (eds.). 2001. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume One. The Archaea and the Deeply Branching and Phototrophic Bacteria. Springer, USA.
  • Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005a. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part A Introductory Essays. Springer, USA.
  • Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005b. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part B The Gammaproteobacteria. Springer, USA.
  • Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005c. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part C The Alpha-, Beta-, Delta-,and Epsilonproteobacteria. Springer, USA.
  • Balows, A., Trüper, H.G., Dworkin, M., Harder, W., Schleifer, K.-H. (eds.). 1992. The Prokaryotes: A Handbook on the biology of bacteria: ecophysiology, isolation, identification, applications. 2nd ed. New York: Springer-Verlag.
  • Stackebrandt, E. (Ed.) 2006. Molecular Identification, Systematics, and Population Structure of Prokaryotes. Springer, Germany.
  • Priest, F.G., Goodfellow, M. (eds.). 2000. Applied microbial systematics. Kluwer Academic Publisher, Dordrecht, The Netherlands.
  • Goodfellow M. and O Donnell A.G. : Chemical methods in pracarytic systematics., J.Wilea and sons., N.Y., 1994
Teaching methods
Lectures.
Assessment methods
Discusse in the begining of each lecture during course, 2 written tests before laboratory course (30 and 50 questions), final oral examination.
Language of instruction
Czech
Follow-Up Courses
Further comments (probably available only in Czech)
Study Materials
The course is taught annually.
Information on course enrolment limitations: Limitujici je kapacita cvicebny
Listed among pre-requisites of other courses
The course is also listed under the following terms Autumn 2007 - for the purpose of the accreditation, Autumn 2010 - only for the accreditation, Autumn 2002, Autumn 2003, Autumn 2004, Autumn 2005, Autumn 2006, Autumn 2007, Autumn 2008, Autumn 2009, Autumn 2011, Autumn 2011 - acreditation, Autumn 2012, Autumn 2013, Autumn 2014, Autumn 2015, Autumn 2016, autumn 2017, Autumn 2018, Autumn 2019, Autumn 2020, autumn 2021, Autumn 2022, Autumn 2023, Autumn 2024.

Bi6700 Taxonomy of prokaryotes

Faculty of Science
Autumn 2009
Extent and Intensity
4/0/0. 4 credit(s) (plus extra credits for completion). Type of Completion: zk (examination).
Teacher(s)
prof. RNDr. Ivo Sedláček, CSc. (lecturer)
Mgr. et Mgr. Veronika Oškerová, Ph.D. (assistant)
Guaranteed by
prof. RNDr. Ivo Sedláček, CSc.
Department of Experimental Biology – Biology Section – Faculty of Science
Contact Person: prof. RNDr. Ivo Sedláček, CSc.
Timetable
Tue 8:00–10:50 Bpt,01013
Prerequisites
Examination - basic microbiology, biochemistry, basic molecular biology.
Course Enrolment Limitations
The course is also offered to the students of the fields other than those the course is directly associated with.
fields of study / plans the course is directly associated with
Course objectives
At the end of this course, students should be able to identified prokaryotes (domains Archaea and Bacteria) based on their phylogenetic position. Owing to learned knowledges the course holder is able to use obtained information in bacterial taxonomy and independently interpret acquired data for both typing of bacterial isolates and for identification of unknown samples of prokaryotic microorganisms.
Syllabus
  • Bacterial taxonomy summarises a phylogenetic position of prokaryotic microorganisms (domains Archaea and Bacteria) and defines a concept of systematic (one lecture). Menbers of domain Archaea are mentioned only in basic features of families and genera (one lecture). The main attention is aimed to representatives of domain Bacteria which are divided in this course into several parts. The first part contains taxonomy of different classes of phylum Proteobacteria (fifth lectures). The second part includes other phyla of Gram negative cocci and rods - aerobic, facultative anaerobic and obligate anaerobic; regular or irregular (three lectures). The last part of lecture is aimed to Gram positive bacteria (phylum Actinobacteria and Firmicutes) - morphologically different prokaryotae, such as mycobacteria, nokardioform or mycelium forming bacteria and sporeforming bacteria (four lectures). At the end of this course, students should be able to apply a obtained phenotypic and phylogenetic data for classification of microorganisms or for typing of microorganisms. They could understand a similarity or relaionships among species and would be able to explain to intra- or inter-species relationships.
Literature
  • SEDLÁČEK, Ivo. Taxonomie prokaryot (Taxonomy of prokaryotes). 1st ed. Brno: Masarykova univerzita, 2007, 270 pp. 55-969C-2006 02/58 12Př. ISBN 80-210-4207-9. info
  • Euzéby, J.P. 2007. List of prokaryotic names with standing in nomenclature. On-line: http://www.bacterio.cict.fr
  • Garrity, G.M., Boone, D.R., Castenholz, R.W. (eds.). 2001. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume One. The Archaea and the Deeply Branching and Phototrophic Bacteria. Springer, USA.
  • Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005a. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part A Introductory Essays. Springer, USA.
  • Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005b. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part B The Gammaproteobacteria. Springer, USA.
  • Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005c. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part C The Alpha-, Beta-, Delta-,and Epsilonproteobacteria. Springer, USA.
  • Balows, A., Trüper, H.G., Dworkin, M., Harder, W., Schleifer, K.-H. (eds.). 1992. The Prokaryotes: A Handbook on the biology of bacteria: ecophysiology, isolation, identification, applications. 2nd ed. New York: Springer-Verlag.
  • Stackebrandt, E. (Ed.) 2006. Molecular Identification, Systematics, and Population Structure of Prokaryotes. Springer, Germany.
  • Priest, F.G., Goodfellow, M. (eds.). 2000. Applied microbial systematics. Kluwer Academic Publisher, Dordrecht, The Netherlands.
  • Goodfellow M. and O Donnell A.G. : Chemical methods in pracarytic systematics., J.Wilea and sons., N.Y., 1994
Teaching methods
Lectures.
Assessment methods
Discusse in the begining of each lecture during course, 2 written tests before laboratory course (30 and 50 questions), final oral examination.
Language of instruction
Czech
Follow-Up Courses
Further comments (probably available only in Czech)
Study Materials
The course is taught annually.
Information on course enrolment limitations: Limitujici je kapacita cvicebny
Listed among pre-requisites of other courses
The course is also listed under the following terms Autumn 2007 - for the purpose of the accreditation, Autumn 2010 - only for the accreditation, Autumn 2002, Autumn 2003, Autumn 2004, Autumn 2005, Autumn 2006, Autumn 2007, Autumn 2008, Autumn 2010, Autumn 2011, Autumn 2011 - acreditation, Autumn 2012, Autumn 2013, Autumn 2014, Autumn 2015, Autumn 2016, autumn 2017, Autumn 2018, Autumn 2019, Autumn 2020, autumn 2021, Autumn 2022, Autumn 2023, Autumn 2024.

Bi6700 Taxonomy of prokaryotes

Faculty of Science
Autumn 2008
Extent and Intensity
4/0/0. 4 credit(s) (fasci plus compl plus > 4). Type of Completion: zk (examination).
Teacher(s)
prof. RNDr. Ivo Sedláček, CSc. (lecturer)
Guaranteed by
prof. RNDr. Ivo Sedláček, CSc.
Department of Experimental Biology – Biology Section – Faculty of Science
Contact Person: prof. RNDr. Ivo Sedláček, CSc.
Timetable
Wed 11:00–14:50 Bpt,01013
Prerequisites
Examination - basic microbiology, biochemistry, basic molecular biology.
Course Enrolment Limitations
The course is also offered to the students of the fields other than those the course is directly associated with.
fields of study / plans the course is directly associated with
Course objectives
The main objective of the course the Taxonomy of prokaryotes is explanation of systematics of prokaryotic microorganisms (domains Archaea and Bacteria) based on their phylogenetic position. Owing to learned knowledges the course holder is able to use obtained information and independently interpret acquired data for both typing of bacterial isolates and for identification of unknown samples of prokaryotic microorganisms.
Syllabus
  • Bacterial taxonomy summarises a phylogenetic position of prokaryotic microorganisms (domains Archaea and Bacteria) and defines a concept of systematic (one lecture). Menbers of domain Archaea are mentioned only in basic features of families and genera (one lecture). The main attention is aimed to representatives of domain Bacteria which are divided in this course into several parts. The first part contains taxonomy of different classes of phylum Proteobacteria (fifth lectures). The second part includes other phyla of Gram negative cocci and rods - aerobic, facultative anaerobic and obligate anaerobic; regular or irregular (three lectures). The last part of lecture is aimed to Gram positive bacteria (phylum Actinobacteria and Firmicutes) - morphologically different prokaryotae, such as mycobacteria, nokardioform or mycelium forming bacteria and sporeforming bacteria (four lectures). At the end of this course, students should be able to apply a obtained phenotypic and phylogenetic data for classification of microorganisms or for typing of microorganisms. They could understand a similarity or relaionships among species and would be able to explain to intra- or inter-species relationships.
Literature
  • SEDLÁČEK, Ivo. Taxonomie prokaryot (Taxonomy of prokaryotes). 1st ed. Brno: Masarykova univerzita, 2007, 270 pp. 55-969C-2006 02/58 12Př. ISBN 80-210-4207-9. info
  • Euzéby, J.P. 2007. List of prokaryotic names with standing in nomenclature. On-line: http://www.bacterio.cict.fr
  • Garrity, G.M., Boone, D.R., Castenholz, R.W. (eds.). 2001. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume One. The Archaea and the Deeply Branching and Phototrophic Bacteria. Springer, USA.
  • Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005a. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part A Introductory Essays. Springer, USA.
  • Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005b. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part B The Gammaproteobacteria. Springer, USA.
  • Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005c. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part C The Alpha-, Beta-, Delta-,and Epsilonproteobacteria. Springer, USA.
  • Balows, A., Trüper, H.G., Dworkin, M., Harder, W., Schleifer, K.-H. (eds.). 1992. The Prokaryotes: A Handbook on the biology of bacteria: ecophysiology, isolation, identification, applications. 2nd ed. New York: Springer-Verlag.
  • Stackebrandt, E. (Ed.) 2006. Molecular Identification, Systematics, and Population Structure of Prokaryotes. Springer, Germany.
  • Priest, F.G., Goodfellow, M. (eds.). 2000. Applied microbial systematics. Kluwer Academic Publisher, Dordrecht, The Netherlands.
  • Goodfellow M. and O Donnell A.G. : Chemical methods in pracarytic systematics., J.Wilea and sons., N.Y., 1994
Assessment methods
Lectures, discussin during course, 2 written tests before laboratory course, final oral examination.
Language of instruction
Czech
Further comments (probably available only in Czech)
Study Materials
The course is taught annually.
Information on course enrolment limitations: Limitujici je kapacita cvicebny
Listed among pre-requisites of other courses
The course is also listed under the following terms Autumn 2007 - for the purpose of the accreditation, Autumn 2010 - only for the accreditation, Autumn 2002, Autumn 2003, Autumn 2004, Autumn 2005, Autumn 2006, Autumn 2007, Autumn 2009, Autumn 2010, Autumn 2011, Autumn 2011 - acreditation, Autumn 2012, Autumn 2013, Autumn 2014, Autumn 2015, Autumn 2016, autumn 2017, Autumn 2018, Autumn 2019, Autumn 2020, autumn 2021, Autumn 2022, Autumn 2023, Autumn 2024.

Bi6700 Taxonomy of prokaryotes

Faculty of Science
Autumn 2007
Extent and Intensity
4/0/0. 4 credit(s) (fasci plus compl plus > 4). Type of Completion: zk (examination).
Teacher(s)
prof. RNDr. Ivo Sedláček, CSc. (lecturer)
Guaranteed by
prof. RNDr. Ivo Sedláček, CSc.
Department of Experimental Biology – Biology Section – Faculty of Science
Contact Person: prof. RNDr. Ivo Sedláček, CSc.
Timetable
Wed 11:00–14:50 Bpt,01013
Prerequisites
Examination - microbiology, taxonomy of bacteria I., biochemistry.
Course Enrolment Limitations
The course is also offered to the students of the fields other than those the course is directly associated with.
fields of study / plans the course is directly associated with
Course objectives
Bacterial taxonomy summarise a phylogenetic position of microorganisms from Prokaryotae domain and set a concept of systematic. Archaea are mentioned only in basic features of families and genera. The main attention is to domain Bacteria dividing in this lecture into three parts. The first is aimed to Gram negative cocci and rods including straight and curved bacteria or bacteria with gliding motility; on the base of aerobic conditions are mentioned aerobic, facultative anaerobic and anaerobic taxons. The second part includes Gram positive cocci and rods - aerobic, facultative anaerobic and obligate anaerobic; regular or irregular; sporeforming and nonsporeforming. The last part of lecture indicate data about morphologically different prokaryote, such as mycoplasmas, mycobacteria, nokardioform or mycelium forming bacteria and intracellular parasites from ricketsia group.
Syllabus
  • Bacterial taxonomy summarise a phylogenetic position of microorganisms from Prokaryotae domain and set a concept of systematic. Archaea are mentioned only in basic features of families and genera. The main attention is to domain Bacteria dividing in this lecture into three parts. The first is aimed to Gram negative cocci and rods including straight and curved bacteria or bacteria with gliding motility; on the base of aerobic conditions are mentioned aerobic, facultative anaerobic and anaerobic taxons. The second part includes Gram positive cocci and rods - aerobic, facultative anaerobic and obligate anaerobic; regular or irregular; sporeforming and nonsporeforming. The last part of lecture indicate data about morphologically different prokaryote, such as mycoplasmas, mycobacteria, nokardioform or mycelium forming bacteria and intracellular parasites from ricketsia group.
Literature
  • Bergey s manual of systematic bacteriology, Vol. 1., Springer, 2001
  • Goodfellow M. and O Donnell A.G. : Chemical methods in pracarytic systematics., J.Wilea and sons., N.Y., 1994
Assessment methods (in Czech)
Přednáška, ústní zkouška.
Language of instruction
Czech
Further comments (probably available only in Czech)
Study Materials
The course is taught annually.
Information on course enrolment limitations: Limitujici je kapacita cvicebny
Listed among pre-requisites of other courses
The course is also listed under the following terms Autumn 2007 - for the purpose of the accreditation, Autumn 2010 - only for the accreditation, Autumn 2002, Autumn 2003, Autumn 2004, Autumn 2005, Autumn 2006, Autumn 2008, Autumn 2009, Autumn 2010, Autumn 2011, Autumn 2011 - acreditation, Autumn 2012, Autumn 2013, Autumn 2014, Autumn 2015, Autumn 2016, autumn 2017, Autumn 2018, Autumn 2019, Autumn 2020, autumn 2021, Autumn 2022, Autumn 2023, Autumn 2024.

Bi6700 Taxonomy of prokaryotes

Faculty of Science
Autumn 2006
Extent and Intensity
4/0/0. 4 credit(s) (fasci plus compl plus > 4). Type of Completion: zk (examination).
Teacher(s)
prof. RNDr. Ivo Sedláček, CSc. (lecturer)
Guaranteed by
prof. RNDr. Ivo Sedláček, CSc.
Department of Experimental Biology – Biology Section – Faculty of Science
Contact Person: prof. RNDr. Ivo Sedláček, CSc.
Timetable
Wed 9:00–12:50 Bpt,01013
Prerequisites
Examination - microbiology, taxonomy of bacteria I., biochemistry.
Course Enrolment Limitations
The course is also offered to the students of the fields other than those the course is directly associated with.
fields of study / plans the course is directly associated with
Course objectives
Bacterial taxonomy summarise a phylogenetic position of microorganisms from Prokaryotae domain and set a concept of systematic. Archaea are mentioned only in basic features of families and genera. The main attention is to domain Bacteria dividing in this lecture into three parts. The first is aimed to Gram negative cocci and rods including straight and curved bacteria or bacteria with gliding motility; on the base of aerobic conditions are mentioned aerobic, facultative anaerobic and anaerobic taxons. The second part includes Gram positive cocci and rods - aerobic, facultative anaerobic and obligate anaerobic; regular or irregular; sporeforming and nonsporeforming. The last part of lecture indicate data about morphologically different prokaryote, such as mycoplasmas, mycobacteria, nokardioform or mycelium forming bacteria and intracellular parasites from ricketsia group.
Syllabus
  • Bacterial taxonomy summarise a phylogenetic position of microorganisms from Prokaryotae domain and set a concept of systematic. Archaea are mentioned only in basic features of families and genera. The main attention is to domain Bacteria dividing in this lecture into three parts. The first is aimed to Gram negative cocci and rods including straight and curved bacteria or bacteria with gliding motility; on the base of aerobic conditions are mentioned aerobic, facultative anaerobic and anaerobic taxons. The second part includes Gram positive cocci and rods - aerobic, facultative anaerobic and obligate anaerobic; regular or irregular; sporeforming and nonsporeforming. The last part of lecture indicate data about morphologically different prokaryote, such as mycoplasmas, mycobacteria, nokardioform or mycelium forming bacteria and intracellular parasites from ricketsia group.
Literature
  • Bergey s manual of systematic bacteriology, Vol. 1., Springer, 2001
  • Goodfellow M. and O Donnell A.G. : Chemical methods in pracarytic systematics., J.Wilea and sons., N.Y., 1994
Assessment methods (in Czech)
Přednáška, ústní zkouška.
Language of instruction
Czech
Further comments (probably available only in Czech)
The course is taught annually.
Information on course enrolment limitations: Limitujici je kapacita cvicebny
Listed among pre-requisites of other courses
The course is also listed under the following terms Autumn 2007 - for the purpose of the accreditation, Autumn 2010 - only for the accreditation, Autumn 2002, Autumn 2003, Autumn 2004, Autumn 2005, Autumn 2007, Autumn 2008, Autumn 2009, Autumn 2010, Autumn 2011, Autumn 2011 - acreditation, Autumn 2012, Autumn 2013, Autumn 2014, Autumn 2015, Autumn 2016, autumn 2017, Autumn 2018, Autumn 2019, Autumn 2020, autumn 2021, Autumn 2022, Autumn 2023, Autumn 2024.

Bi6700 Taxonomy of prokaryotes

Faculty of Science
Autumn 2005
Extent and Intensity
4/0/0. 4 credit(s) (fasci plus compl plus > 4). Type of Completion: zk (examination).
Teacher(s)
prof. RNDr. Ivo Sedláček, CSc. (lecturer)
Guaranteed by
prof. RNDr. Ivo Sedláček, CSc.
Department of Experimental Biology – Biology Section – Faculty of Science
Contact Person: prof. RNDr. Ivo Sedláček, CSc.
Timetable
Thu 8:00–11:50 Bpt,01013
Prerequisites
Examination - microbiology, taxonomy of bacteria I., biochemistry.
Course Enrolment Limitations
The course is also offered to the students of the fields other than those the course is directly associated with.
fields of study / plans the course is directly associated with
Course objectives
Bacterial taxonomy summarise a phylogenetic position of microorganisms from Prokaryotae domain and set a concept of systematic. Archaea are mentioned only in basic features of families and genera. The main attention is to domain Bacteria dividing in this lecture into three parts. The first is aimed to Gram negative cocci and rods including straight and curved bacteria or bacteria with gliding motility; on the base of aerobic conditions are mentioned aerobic, facultative anaerobic and anaerobic taxons. The second part includes Gram positive cocci and rods - aerobic, facultative anaerobic and obligate anaerobic; regular or irregular; sporeforming and nonsporeforming. The last part of lecture indicate data about morphologically different prokaryote, such as mycoplasmas, mycobacteria, nokardioform or mycelium forming bacteria and intracellular parasites from ricketsia group.
Syllabus
  • Bacterial taxonomy summarise a phylogenetic position of microorganisms from Prokaryotae domain and set a concept of systematic. Archaea are mentioned only in basic features of families and genera. The main attention is to domain Bacteria dividing in this lecture into three parts. The first is aimed to Gram negative cocci and rods including straight and curved bacteria or bacteria with gliding motility; on the base of aerobic conditions are mentioned aerobic, facultative anaerobic and anaerobic taxons. The second part includes Gram positive cocci and rods - aerobic, facultative anaerobic and obligate anaerobic; regular or irregular; sporeforming and nonsporeforming. The last part of lecture indicate data about morphologically different prokaryote, such as mycoplasmas, mycobacteria, nokardioform or mycelium forming bacteria and intracellular parasites from ricketsia group.
Literature
  • Bergey s manual of systematic bacteriology, Vol. 1., Springer, 2001
  • Goodfellow M. and O Donnell A.G. : Chemical methods in pracarytic systematics., J.Wilea and sons., N.Y., 1994
Assessment methods (in Czech)
Přednáška, ústní zkouška.
Language of instruction
Czech
Further comments (probably available only in Czech)
The course is taught annually.
Information on course enrolment limitations: Limitujici je kapacita cvicebny
Listed among pre-requisites of other courses
The course is also listed under the following terms Autumn 2007 - for the purpose of the accreditation, Autumn 2010 - only for the accreditation, Autumn 2002, Autumn 2003, Autumn 2004, Autumn 2006, Autumn 2007, Autumn 2008, Autumn 2009, Autumn 2010, Autumn 2011, Autumn 2011 - acreditation, Autumn 2012, Autumn 2013, Autumn 2014, Autumn 2015, Autumn 2016, autumn 2017, Autumn 2018, Autumn 2019, Autumn 2020, autumn 2021, Autumn 2022, Autumn 2023, Autumn 2024.

Bi6700 Taxonomy of bacteria

Faculty of Science
Autumn 2004
Extent and Intensity
2/0/0. 2 credit(s) (fasci plus compl plus > 4). Type of Completion: zk (examination).
Teacher(s)
prof. RNDr. Ivo Sedláček, CSc. (lecturer)
Guaranteed by
prof. RNDr. Ivo Sedláček, CSc.
Department of Experimental Biology – Biology Section – Faculty of Science
Contact Person: prof. RNDr. Ivo Sedláček, CSc.
Timetable
Wed 11:00–12:50 Bpt,01013
Prerequisites
Examination - microbiology, taxonomy of bacteria I., biochemistry.
Course Enrolment Limitations
The course is also offered to the students of the fields other than those the course is directly associated with.
fields of study / plans the course is directly associated with
Course objectives
Bacterial taxonomy summarise a phylogenetic position of microorganisms from Prokaryotae domain and set a concept of systematic. Archaea are mentioned only in basic features of families and genera. The main attention is to domain Bacteria dividing in this lecture into three parts. The first is aimed to Gram negative cocci and rods including straight and curved bacteria or bacteria with gliding motility; on the base of aerobic conditions are mentioned aerobic, facultative anaerobic and anaerobic taxons. The second part includes Gram positive cocci and rods - aerobic, facultative anaerobic and obligate anaerobic; regular or irregular; sporeforming and nonsporeforming. The last part of lecture indicate data about morphologically different prokaryote, such as mycoplasmas, mycobacteria, nokardioform or mycelium forming bacteria and intracellular parasites from ricketsia group.
Syllabus
  • Bacterial taxonomy summarise a phylogenetic position of microorganisms from Prokaryotae domain and set a concept of systematic. Archaea are mentioned only in basic features of families and genera. The main attention is to domain Bacteria dividing in this lecture into three parts. The first is aimed to Gram negative cocci and rods including straight and curved bacteria or bacteria with gliding motility; on the base of aerobic conditions are mentioned aerobic, facultative anaerobic and anaerobic taxons. The second part includes Gram positive cocci and rods - aerobic, facultative anaerobic and obligate anaerobic; regular or irregular; sporeforming and nonsporeforming. The last part of lecture indicate data about morphologically different prokaryote, such as mycoplasmas, mycobacteria, nokardioform or mycelium forming bacteria and intracellular parasites from ricketsia group.
Literature
  • Bergey s manual of systematic bacteriology, Vol. 1., Springer, 2001
  • Goodfellow M. and O Donnell A.G. : Chemical methods in pracarytic systematics., J.Wilea and sons., N.Y., 1994
Assessment methods (in Czech)
Přednáška, ústní zkouška.
Language of instruction
Czech
Further comments (probably available only in Czech)
The course is taught annually.
Information on course enrolment limitations: Limitujici je kapacita cvicebny
Listed among pre-requisites of other courses
The course is also listed under the following terms Autumn 2007 - for the purpose of the accreditation, Autumn 2010 - only for the accreditation, Autumn 2002, Autumn 2003, Autumn 2005, Autumn 2006, Autumn 2007, Autumn 2008, Autumn 2009, Autumn 2010, Autumn 2011, Autumn 2011 - acreditation, Autumn 2012, Autumn 2013, Autumn 2014, Autumn 2015, Autumn 2016, autumn 2017, Autumn 2018, Autumn 2019, Autumn 2020, autumn 2021, Autumn 2022, Autumn 2023, Autumn 2024.

Bi6700 Taxonomy of bacteria

Faculty of Science
Autumn 2003
Extent and Intensity
2/0/0. 2 credit(s) (fasci plus compl plus > 4). Type of Completion: zk (examination).
Teacher(s)
prof. RNDr. Ivo Sedláček, CSc. (lecturer)
Guaranteed by
prof. RNDr. Ivo Sedláček, CSc.
Department of Experimental Biology – Biology Section – Faculty of Science
Contact Person: prof. RNDr. Ivo Sedláček, CSc.
Prerequisites
Examination - microbiology, taxonomy of bacteria I., biochemistry.
Course Enrolment Limitations
The course is also offered to the students of the fields other than those the course is directly associated with.
fields of study / plans the course is directly associated with
Course objectives
Bacterial taxonomy summarise a phylogenetic position of microorganisms from Prokaryotae domain and set a concept of systematic. Archaea are mentioned only in basic features of families and genera. The main attention is to domain Bacteria dividing in this lecture into three parts. The first is aimed to Gram negative cocci and rods including straight and curved bacteria or bacteria with gliding motility; on the base of aerobic conditions are mentioned aerobic, facultative anaerobic and anaerobic taxons. The second part includes Gram positive cocci and rods - aerobic, facultative anaerobic and obligate anaerobic; regular or irregular; sporeforming and nonsporeforming. The last part of lecture indicate data about morphologically different prokaryote, such as mycoplasmas, mycobacteria, nokardioform or mycelium forming bacteria and intracellular parasites from ricketsia group.
Syllabus
  • Bacterial taxonomy summarise a phylogenetic position of microorganisms from Prokaryotae domain and set a concept of systematic. Archaea are mentioned only in basic features of families and genera. The main attention is to domain Bacteria dividing in this lecture into three parts. The first is aimed to Gram negative cocci and rods including straight and curved bacteria or bacteria with gliding motility; on the base of aerobic conditions are mentioned aerobic, facultative anaerobic and anaerobic taxons. The second part includes Gram positive cocci and rods - aerobic, facultative anaerobic and obligate anaerobic; regular or irregular; sporeforming and nonsporeforming. The last part of lecture indicate data about morphologically different prokaryote, such as mycoplasmas, mycobacteria, nokardioform or mycelium forming bacteria and intracellular parasites from ricketsia group.
Literature
  • Bergey s manual of systematic bacteriology, Vol. 1., Springer, 2001
  • Goodfellow M. and O Donnell A.G. : Chemical methods in pracarytic systematics., J.Wilea and sons., N.Y., 1994
Assessment methods (in Czech)
Přednáška, ústní zkouška.
Language of instruction
Czech
Further comments (probably available only in Czech)
The course is taught annually.
The course is taught: every week.
Information on course enrolment limitations: Limitujici je kapacita cvicebny
Listed among pre-requisites of other courses
The course is also listed under the following terms Autumn 2007 - for the purpose of the accreditation, Autumn 2010 - only for the accreditation, Autumn 2002, Autumn 2004, Autumn 2005, Autumn 2006, Autumn 2007, Autumn 2008, Autumn 2009, Autumn 2010, Autumn 2011, Autumn 2011 - acreditation, Autumn 2012, Autumn 2013, Autumn 2014, Autumn 2015, Autumn 2016, autumn 2017, Autumn 2018, Autumn 2019, Autumn 2020, autumn 2021, Autumn 2022, Autumn 2023, Autumn 2024.

Bi6700 Taxonomy of bacteria

Faculty of Science
Autumn 2002
Extent and Intensity
2/0/0. 4 credit(s). Type of Completion: zk (examination).
Teacher(s)
prof. RNDr. Ivo Sedláček, CSc. (lecturer)
Guaranteed by
prof. RNDr. Ivo Sedláček, CSc.
Department of Experimental Biology – Biology Section – Faculty of Science
Contact Person: prof. RNDr. Ivo Sedláček, CSc.
Prerequisites
Examination - microbiology, taxonomy of bacteria I., biochemistry.
Course Enrolment Limitations
The course is also offered to the students of the fields other than those the course is directly associated with.
fields of study / plans the course is directly associated with
Course objectives
Bacterial taxonomy summarise a phylogenetic position of microorganisms from Prokaryotae domain and set a concept of systematic. Archaea are mentioned only in basic features of families and genera. The main attention is to domain Bacteria dividing in this lecture into three parts. The first is aimed to Gram negative cocci and rods including straight and curved bacteria or bacteria with gliding motility; on the base of aerobic conditions are mentioned aerobic, facultative anaerobic and anaerobic taxons. The second part includes Gram positive cocci and rods - aerobic, facultative anaerobic and obligate anaerobic; regular or irregular; sporeforming and nonsporeforming. The last part of lecture indicate data about morphologically different prokaryote, such as mycoplasmas, mycobacteria, nokardioform or mycelium forming bacteria and intracellular parasites from ricketsia group.
Syllabus
  • Bacterial taxonomy summarise a phylogenetic position of microorganisms from Prokaryotae domain and set a concept of systematic. Archaea are mentioned only in basic features of families and genera. The main attention is to domain Bacteria dividing in this lecture into three parts. The first is aimed to Gram negative cocci and rods including straight and curved bacteria or bacteria with gliding motility; on the base of aerobic conditions are mentioned aerobic, facultative anaerobic and anaerobic taxons. The second part includes Gram positive cocci and rods - aerobic, facultative anaerobic and obligate anaerobic; regular or irregular; sporeforming and nonsporeforming. The last part of lecture indicate data about morphologically different prokaryote, such as mycoplasmas, mycobacteria, nokardioform or mycelium forming bacteria and intracellular parasites from ricketsia group.
Literature
  • Bergey s manual of systematic bacteriology, Vol. 1., Springer, 2001
  • Goodfellow M. and O Donnell A.G. : Chemical methods in pracarytic systematics., J.Wilea and sons., N.Y., 1994
Assessment methods (in Czech)
Přednáška, ústní zkouška.
Language of instruction
Czech
Further comments (probably available only in Czech)
The course is taught annually.
The course is taught: every week.
Information on course enrolment limitations: Limitujici je kapacita cvicebny
Listed among pre-requisites of other courses
The course is also listed under the following terms Autumn 2007 - for the purpose of the accreditation, Autumn 2010 - only for the accreditation, Autumn 2003, Autumn 2004, Autumn 2005, Autumn 2006, Autumn 2007, Autumn 2008, Autumn 2009, Autumn 2010, Autumn 2011, Autumn 2011 - acreditation, Autumn 2012, Autumn 2013, Autumn 2014, Autumn 2015, Autumn 2016, autumn 2017, Autumn 2018, Autumn 2019, Autumn 2020, autumn 2021, Autumn 2022, Autumn 2023, Autumn 2024.

Bi6700 Taxonomy of prokaryotes

Faculty of Science
Autumn 2011 - acreditation

The information about the term Autumn 2011 - acreditation is not made public

Extent and Intensity
3/0/0. 3 credit(s) (fasci plus compl plus > 4). Type of Completion: zk (examination).
Teacher(s)
prof. RNDr. Ivo Sedláček, CSc. (lecturer)
Guaranteed by
prof. RNDr. Ivo Sedláček, CSc.
Department of Experimental Biology – Biology Section – Faculty of Science
Contact Person: prof. RNDr. Ivo Sedláček, CSc.
Prerequisites
C3580 Biochemistry && Bi4020 Molecular biology && Bi4090 General microbiology
Examination - basic microbiology, biochemistry, basic molecular biology.
Course Enrolment Limitations
The course is also offered to the students of the fields other than those the course is directly associated with.
fields of study / plans the course is directly associated with
Course objectives
At the end of this course, students should be able to identified prokaryotes (domains Archaea and Bacteria) based on their phylogenetic position. Owing to learned knowledges the course holder is able to use obtained information in bacterial taxonomy and independently interpret acquired data for both typing of bacterial isolates and for identification of unknown samples of prokaryotic microorganisms.
Syllabus
  • Bacterial taxonomy summarises a phylogenetic position of prokaryotic microorganisms (domains Archaea and Bacteria) and defines a concept of systematic (one lecture). Menbers of domain Archaea are mentioned only in basic features of families and genera (one lecture). The main attention is aimed to representatives of domain Bacteria which are divided in this course into several parts. The first part contains taxonomy of different classes of phylum Proteobacteria (fifth lectures). The second part includes other phyla of Gram negative cocci and rods - aerobic, facultative anaerobic and obligate anaerobic; regular or irregular (three lectures). The last part of lecture is aimed to Gram positive bacteria (phylum Actinobacteria and Firmicutes) - morphologically different prokaryotae, such as mycobacteria, nokardioform or mycelium forming bacteria and sporeforming bacteria (four lectures). At the end of this course, students should be able to apply a obtained phenotypic and phylogenetic data for classification of microorganisms or for typing of microorganisms. They could understand a similarity or relaionships among species and would be able to explain to intra- or inter-species relationships.
Literature
  • SEDLÁČEK, Ivo. Taxonomie prokaryot (Taxonomy of prokaryotes). 1st ed. Brno: Masarykova univerzita, 2007, 270 pp. 55-969C-2006 02/58 12Př. ISBN 80-210-4207-9. info
  • Euzéby, J.P. 2007. List of prokaryotic names with standing in nomenclature. On-line: http://www.bacterio.cict.fr
  • Garrity, G.M., Boone, D.R., Castenholz, R.W. (eds.). 2001. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume One. The Archaea and the Deeply Branching and Phototrophic Bacteria. Springer, USA.
  • Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005a. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part A Introductory Essays. Springer, USA.
  • Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005b. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part B The Gammaproteobacteria. Springer, USA.
  • Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005c. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part C The Alpha-, Beta-, Delta-,and Epsilonproteobacteria. Springer, USA.
  • Balows, A., Trüper, H.G., Dworkin, M., Harder, W., Schleifer, K.-H. (eds.). 1992. The Prokaryotes: A Handbook on the biology of bacteria: ecophysiology, isolation, identification, applications. 2nd ed. New York: Springer-Verlag.
  • Stackebrandt, E. (Ed.) 2006. Molecular Identification, Systematics, and Population Structure of Prokaryotes. Springer, Germany.
  • Priest, F.G., Goodfellow, M. (eds.). 2000. Applied microbial systematics. Kluwer Academic Publisher, Dordrecht, The Netherlands.
  • Goodfellow M. and O Donnell A.G. : Chemical methods in pracarytic systematics., J.Wilea and sons., N.Y., 1994
Teaching methods
Lectures.
Assessment methods
Discusse in the begining of each lecture during course, 2 written tests before laboratory course (30 and 50 questions), final oral examination.
Language of instruction
Czech
Follow-Up Courses
Further comments (probably available only in Czech)
The course is taught annually.
The course is taught: every week.
Information on course enrolment limitations: Limitujici je kapacita cvicebny
Listed among pre-requisites of other courses
The course is also listed under the following terms Autumn 2007 - for the purpose of the accreditation, Autumn 2010 - only for the accreditation, Autumn 2002, Autumn 2003, Autumn 2004, Autumn 2005, Autumn 2006, Autumn 2007, Autumn 2008, Autumn 2009, Autumn 2010, Autumn 2011, Autumn 2012, Autumn 2013, Autumn 2014, Autumn 2015, Autumn 2016, autumn 2017, Autumn 2018, Autumn 2019, Autumn 2020, autumn 2021, Autumn 2022, Autumn 2023, Autumn 2024.

Bi6700 Taxonomy of prokaryotes

Faculty of Science
Autumn 2010 - only for the accreditation
Extent and Intensity
4/0/0. 4 credit(s) (plus extra credits for completion). Type of Completion: zk (examination).
Teacher(s)
prof. RNDr. Ivo Sedláček, CSc. (lecturer)
Guaranteed by
prof. RNDr. Ivo Sedláček, CSc.
Department of Experimental Biology – Biology Section – Faculty of Science
Contact Person: prof. RNDr. Ivo Sedláček, CSc.
Prerequisites
C3580 Biochemistry && Bi4020 Molecular biology && Bi4090 General microbiology
Examination - basic microbiology, biochemistry, basic molecular biology.
Course Enrolment Limitations
The course is also offered to the students of the fields other than those the course is directly associated with.
fields of study / plans the course is directly associated with
Course objectives
At the end of this course, students should be able to identified prokaryotes (domains Archaea and Bacteria) based on their phylogenetic position. Owing to learned knowledges the course holder is able to use obtained information in bacterial taxonomy and independently interpret acquired data for both typing of bacterial isolates and for identification of unknown samples of prokaryotic microorganisms.
Syllabus
  • Bacterial taxonomy summarises a phylogenetic position of prokaryotic microorganisms (domains Archaea and Bacteria) and defines a concept of systematic (one lecture). Menbers of domain Archaea are mentioned only in basic features of families and genera (one lecture). The main attention is aimed to representatives of domain Bacteria which are divided in this course into several parts. The first part contains taxonomy of different classes of phylum Proteobacteria (fifth lectures). The second part includes other phyla of Gram negative cocci and rods - aerobic, facultative anaerobic and obligate anaerobic; regular or irregular (three lectures). The last part of lecture is aimed to Gram positive bacteria (phylum Actinobacteria and Firmicutes) - morphologically different prokaryotae, such as mycobacteria, nokardioform or mycelium forming bacteria and sporeforming bacteria (four lectures). At the end of this course, students should be able to apply a obtained phenotypic and phylogenetic data for classification of microorganisms or for typing of microorganisms. They could understand a similarity or relaionships among species and would be able to explain to intra- or inter-species relationships.
Literature
  • SEDLÁČEK, Ivo. Taxonomie prokaryot (Taxonomy of prokaryotes). 1st ed. Brno: Masarykova univerzita, 2007, 270 pp. 55-969C-2006 02/58 12Př. ISBN 80-210-4207-9. info
  • Euzéby, J.P. 2007. List of prokaryotic names with standing in nomenclature. On-line: http://www.bacterio.cict.fr
  • Garrity, G.M., Boone, D.R., Castenholz, R.W. (eds.). 2001. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume One. The Archaea and the Deeply Branching and Phototrophic Bacteria. Springer, USA.
  • Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005a. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part A Introductory Essays. Springer, USA.
  • Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005b. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part B The Gammaproteobacteria. Springer, USA.
  • Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005c. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part C The Alpha-, Beta-, Delta-,and Epsilonproteobacteria. Springer, USA.
  • Balows, A., Trüper, H.G., Dworkin, M., Harder, W., Schleifer, K.-H. (eds.). 1992. The Prokaryotes: A Handbook on the biology of bacteria: ecophysiology, isolation, identification, applications. 2nd ed. New York: Springer-Verlag.
  • Stackebrandt, E. (Ed.) 2006. Molecular Identification, Systematics, and Population Structure of Prokaryotes. Springer, Germany.
  • Priest, F.G., Goodfellow, M. (eds.). 2000. Applied microbial systematics. Kluwer Academic Publisher, Dordrecht, The Netherlands.
  • Goodfellow M. and O Donnell A.G. : Chemical methods in pracarytic systematics., J.Wilea and sons., N.Y., 1994
Teaching methods
Lectures.
Assessment methods
Discusse in the begining of each lecture during course, 2 written tests before laboratory course (30 and 50 questions), final oral examination.
Language of instruction
Czech
Follow-Up Courses
Further comments (probably available only in Czech)
The course is taught annually.
The course is taught: every week.
Information on course enrolment limitations: Limitujici je kapacita cvicebny
Listed among pre-requisites of other courses
The course is also listed under the following terms Autumn 2007 - for the purpose of the accreditation, Autumn 2002, Autumn 2003, Autumn 2004, Autumn 2005, Autumn 2006, Autumn 2007, Autumn 2008, Autumn 2009, Autumn 2010, Autumn 2011, Autumn 2011 - acreditation, Autumn 2012, Autumn 2013, Autumn 2014, Autumn 2015, Autumn 2016, autumn 2017, Autumn 2018, Autumn 2019, Autumn 2020, autumn 2021, Autumn 2022, Autumn 2023, Autumn 2024.

Bi6700 Taxonomy of prokaryotes

Faculty of Science
Autumn 2007 - for the purpose of the accreditation
Extent and Intensity
4/0/0. 4 credit(s) (fasci plus compl plus > 4). Type of Completion: zk (examination).
Teacher(s)
prof. RNDr. Ivo Sedláček, CSc. (lecturer)
Guaranteed by
prof. RNDr. Ivo Sedláček, CSc.
Department of Experimental Biology – Biology Section – Faculty of Science
Contact Person: prof. RNDr. Ivo Sedláček, CSc.
Prerequisites
Examination - microbiology, taxonomy of bacteria I., biochemistry.
Course Enrolment Limitations
The course is also offered to the students of the fields other than those the course is directly associated with.
fields of study / plans the course is directly associated with
Course objectives
Bacterial taxonomy summarise a phylogenetic position of microorganisms from Prokaryotae domain and set a concept of systematic. Archaea are mentioned only in basic features of families and genera. The main attention is to domain Bacteria dividing in this lecture into three parts. The first is aimed to Gram negative cocci and rods including straight and curved bacteria or bacteria with gliding motility; on the base of aerobic conditions are mentioned aerobic, facultative anaerobic and anaerobic taxons. The second part includes Gram positive cocci and rods - aerobic, facultative anaerobic and obligate anaerobic; regular or irregular; sporeforming and nonsporeforming. The last part of lecture indicate data about morphologically different prokaryote, such as mycoplasmas, mycobacteria, nokardioform or mycelium forming bacteria and intracellular parasites from ricketsia group.
Syllabus
  • Bacterial taxonomy summarise a phylogenetic position of microorganisms from Prokaryotae domain and set a concept of systematic. Archaea are mentioned only in basic features of families and genera. The main attention is to domain Bacteria dividing in this lecture into three parts. The first is aimed to Gram negative cocci and rods including straight and curved bacteria or bacteria with gliding motility; on the base of aerobic conditions are mentioned aerobic, facultative anaerobic and anaerobic taxons. The second part includes Gram positive cocci and rods - aerobic, facultative anaerobic and obligate anaerobic; regular or irregular; sporeforming and nonsporeforming. The last part of lecture indicate data about morphologically different prokaryote, such as mycoplasmas, mycobacteria, nokardioform or mycelium forming bacteria and intracellular parasites from ricketsia group.
Literature
  • Bergey s manual of systematic bacteriology, Vol. 1., Springer, 2001
  • Goodfellow M. and O Donnell A.G. : Chemical methods in pracarytic systematics., J.Wilea and sons., N.Y., 1994
Assessment methods (in Czech)
Přednáška, ústní zkouška.
Language of instruction
Czech
Further comments (probably available only in Czech)
The course is taught annually.
The course is taught: every week.
Information on course enrolment limitations: Limitujici je kapacita cvicebny
Listed among pre-requisites of other courses
The course is also listed under the following terms Autumn 2010 - only for the accreditation, Autumn 2002, Autumn 2003, Autumn 2004, Autumn 2005, Autumn 2006, Autumn 2007, Autumn 2008, Autumn 2009, Autumn 2010, Autumn 2011, Autumn 2011 - acreditation, Autumn 2012, Autumn 2013, Autumn 2014, Autumn 2015, Autumn 2016, autumn 2017, Autumn 2018, Autumn 2019, Autumn 2020, autumn 2021, Autumn 2022, Autumn 2023, Autumn 2024.