PřF:C2110 UNIX and programming - Course Information
C2110 UNIX and programming
Faculty of ScienceAutumn 2012
- Extent and Intensity
- 0/2/0. 2 credit(s) (plus extra credits for completion). Type of Completion: k (colloquium).
- Teacher(s)
- RNDr. Petr Kulhánek, Ph.D. (lecturer)
Mgr. Jakub Štěpán, Ph.D. (seminar tutor)
Ing. Tomáš Trnka, Ph.D. (seminar tutor) - Guaranteed by
- RNDr. Petr Kulhánek, Ph.D.
National Centre for Biomolecular Research – Faculty of Science
Supplier department: National Centre for Biomolecular Research – Faculty of Science - Timetable of Seminar Groups
- C2110/01: Mon 13:00–14:50 C04/118, P. Kulhánek, J. Štěpán
C2110/02: Tue 15:00–16:50 C04/118, P. Kulhánek, T. Trnka - Prerequisites
- Basic work with PC (for example MS Windows XX, Word, Excel)
- Course Enrolment Limitations
- The course is also offered to the students of the fields other than those the course is directly associated with.
The capacity limit for the course is 42 student(s).
Current registration and enrolment status: enrolled: 0/42, only registered: 0/42, only registered with preference (fields directly associated with the programme): 0/42 - fields of study / plans the course is directly associated with
- Analytical Biochemistry (programme PřF, N-BCH)
- Analytical Chemistry (programme PřF, D-CH4)
- Analytical Chemistry (programme PřF, N-CH)
- Inorganic Chemistry (programme PřF, D-CH4)
- Inorganic Chemistry (programme PřF, N-CH)
- Applied Biochemistry (programme PřF, B-AB)
- Biophysical Chemistry (programme PřF, B-CH)
- Biophysics (programme PřF, B-FY)
- Biophysics (programme PřF, D-FY4)
- Biophysics (programme PřF, N-FY)
- Biochemistry (programme PřF, B-BCH)
- Biochemistry (programme PřF, D-BCH4)
- Biochemistry (programme PřF, N-CH)
- Biomolecular Chemistry (programme PřF, D-BCH4)
- Biomolecular Chemistry (programme PřF, N-BCH)
- Physical Chemistry (programme PřF, D-CH4)
- Physical Chemistry (programme PřF, N-CH)
- Macromolecular Chemistry (programme PřF, D-CH)
- Chemistry (programme PřF, B-CH)
- Environmental Chemistry (programme PřF, D-CH4)
- Environmental Chemistry (programme PřF, N-CH)
- Chemoinformatics and Bioinformatics (programme PřF, B-BCH)
- Macromolecular Chemistry (programme PřF, N-CH)
- Materials Chemistry (programme PřF, D-CH4)
- Material Chemistry (programme PřF, N-CH)
- Modelling and Calculations (programme PřF, B-AM)
- Modelling and Calculations (programme PřF, B-MA)
- Organic Chemistry (programme PřF, D-CH4)
- Organic Chemistry (programme PřF, N-CH)
- Structural Chemistry (programme PřF, N-CH)
- Course objectives
- The seminar is providing an alternative for widely spread MS Windows environment. At the end of the course students should have the deeper knowledge of the programs that they are working with and to their own applicationcreation. Knowledge obtained in this seminar are necessary groundwork for computational chemistry and molecular modelling and eventually for further studies involving compiled languages such is C/C++.
- Syllabus
- 1. Cluster WOLF (structure, usage rules, administrators)
- 2. Login (local and remote login, display export, password change)
- 3. Program equipment (system applications, scientific applications)
- 4. Text editors (vi, graphical text editors)
- 5. Command line (terminals, structure, history and automatic completition)
- 6. File system (structure, absolute and relative paths, permissions, special files, disk volumes)
- 7. Commands (manual pages, overview of commands)
- 8. Processes (processes, standard input and output, redirections, pipes)
- 9. Introduction into scripting (what is scripting, advantages and disadvantages, script execution)
- 10. Scptiong in Bash (variables, basic controlling constructions)
- 11. Scripting in GNUPlot (2D and 3D graph drawing, interactive versus non-interactive mode)
- 12. Scripting in AWK (basic construction, simple text file processing)
- 13. Application of scripting (analysis of free energy calculations, students projects)
- Literature
- HAHN, Harley and Peter NORTON. Průvodce UNIXEM od Petera Nortona : Jak komunikovat s UNIXEM, jak UNIX ukládá a zobrazuje informace, používání unixového systému souborů, práce s editorem vi : Peter Norton's Guide to UNIX (Orig.). 1.vyd. Brno: UNIS, 1993, XXIV, 562. info
- BRANDEJS, Michal. UNIX - Linux : praktický průvodce. 1. vyd. Praha: Grada, 1996, 340 s. ISBN 8071691704. info
- PETRLÍK, Lukáš. Jemný úvod do systému UNIX. 1. vyd. České Budějovice: Kopp, 1995, 189 s. ISBN 80-85828-28-6. info
- Teaching methods
- exercising practical examples, class discussion
- Assessment methods
- class exercises in a computer room, individual consultations with a teacher, homeworks, final project and written test, colloquium
- Language of instruction
- Czech
- Follow-Up Courses
- Further Comments
- Study Materials
The course is taught annually. - Listed among pre-requisites of other courses
- Enrolment Statistics (Autumn 2012, recent)
- Permalink: https://is.muni.cz/course/sci/autumn2012/C2110