edu.cmu.cs.sb.drem
Class DREM_DataSet
java.lang.Object
edu.cmu.cs.sb.core.DataSetCore
edu.cmu.cs.sb.drem.DREM_DataSet
public class DREM_DataSet
- extends DataSetCore
Class extends DataSetCore which contains the underlying data and parameters
of the methods with an instance of DREM_GoAnnotations
Fields inherited from class edu.cmu.cs.sb.core.DataSetCore |
badd0, bfullrepeat, bmaxminval, bspotincluded, btakelog, data, dmincorrelation, dsamplemins, dthresholdvalue, genenames, generepeatspottimedata, generepeatspottimepma, genespottimedata, genespottimepma, htFiltered, nmaxmissing, numcols, numrows, otherInputFiles, pmavalues, probenames, sortedcorrvals, szGeneHeader, szInputFile, szProbeHeader |
Constructor Summary |
DREM_DataSet(DataSetCore theDataSetCore,
DREM_GoAnnotations tga)
Constructor that does a simple copy the contents of theDataSetCore and tga |
DREM_DataSet(java.lang.String szInputFile,
int nmaxmissing,
double dthresholdvalue,
double dmincorrelation,
boolean btakelog,
boolean bspotincluded,
boolean brepeatset,
boolean badd0,
boolean bmaxminval,
boolean bfullrepeat)
Constructor that takes input parameters and calls dataSetReader to read in the content of szInputFile |
Methods inherited from class edu.cmu.cs.sb.core.DataSetCore |
addExtraToFilter, averageAndFilterDuplicates, dataSetReader, filterdistprofiles, filterDuplicates, filtergenesgeneral, filtergenesthreshold1point, filtergenesthreshold2, filterMissing, filterMissing1point, logratio2, mergeDataSets |
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
DREM_DataSet
public DREM_DataSet(DataSetCore theDataSetCore,
DREM_GoAnnotations tga)
- Constructor that does a simple copy the contents of theDataSetCore and tga
DREM_DataSet
public DREM_DataSet(java.lang.String szInputFile,
int nmaxmissing,
double dthresholdvalue,
double dmincorrelation,
boolean btakelog,
boolean bspotincluded,
boolean brepeatset,
boolean badd0,
boolean bmaxminval,
boolean bfullrepeat)
throws java.io.IOException,
java.io.FileNotFoundException,
java.lang.IllegalArgumentException
- Constructor that takes input parameters and calls dataSetReader to read in the content of szInputFile
- Throws:
java.io.IOException
java.io.FileNotFoundException
java.lang.IllegalArgumentException