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java.lang.Objectjava.awt.Component
java.awt.Container
java.awt.Window
java.awt.Frame
javax.swing.JFrame
edu.cmu.cs.sb.stem.ProfileGui
public class ProfileGui
Class for interface display for all the genes assigned to the same profile
Nested Class Summary |
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Nested classes/interfaces inherited from class javax.swing.JFrame |
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javax.swing.JFrame.AccessibleJFrame |
Nested classes/interfaces inherited from class java.awt.Frame |
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java.awt.Frame.AccessibleAWTFrame |
Nested classes/interfaces inherited from class java.awt.Window |
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java.awt.Window.AccessibleAWTWindow |
Nested classes/interfaces inherited from class java.awt.Container |
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java.awt.Container.AccessibleAWTContainer |
Nested classes/interfaces inherited from class java.awt.Component |
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java.awt.Component.AccessibleAWTComponent, java.awt.Component.BaselineResizeBehavior, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy |
Field Summary |
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Fields inherited from class javax.swing.JFrame |
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accessibleContext, EXIT_ON_CLOSE, rootPane, rootPaneCheckingEnabled |
Fields inherited from class java.awt.Frame |
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CROSSHAIR_CURSOR, DEFAULT_CURSOR, E_RESIZE_CURSOR, HAND_CURSOR, ICONIFIED, MAXIMIZED_BOTH, MAXIMIZED_HORIZ, MAXIMIZED_VERT, MOVE_CURSOR, N_RESIZE_CURSOR, NE_RESIZE_CURSOR, NORMAL, NW_RESIZE_CURSOR, S_RESIZE_CURSOR, SE_RESIZE_CURSOR, SW_RESIZE_CURSOR, TEXT_CURSOR, W_RESIZE_CURSOR, WAIT_CURSOR |
Fields inherited from class java.awt.Component |
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BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT |
Fields inherited from interface javax.swing.WindowConstants |
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DISPOSE_ON_CLOSE, DO_NOTHING_ON_CLOSE, HIDE_ON_CLOSE |
Fields inherited from interface java.awt.image.ImageObserver |
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ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH |
Constructor Summary | |
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ProfileGui(STEM_DataSet theDataSet,
int nprofile,
int[] ranklookup,
java.util.HashSet inames,
int ncompareprofile,
java.lang.String szIntersect,
java.lang.String szGene,
java.lang.String szSpot,
GenePlotPanel thegeneplotpanel,
ChromFrame cf)
Constructor renders the display interface |
Method Summary | |
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static java.lang.String |
clusterArrayToString(java.util.ArrayList alcprofiles)
Static method that returns an array of profiles, a string with their profile IDs |
void |
componentHidden(java.awt.event.ComponentEvent e)
Empty method |
void |
componentMoved(java.awt.event.ComponentEvent e)
Empty method |
void |
componentResized(java.awt.event.ComponentEvent e)
Empty method |
void |
componentShown(java.awt.event.ComponentEvent e)
Empty method |
void |
drawintersectgo(java.awt.Color fillColor)
Draws button for GO table for set of genes in a comparison intersection |
java.lang.String |
enrichedToSz(double dexpected)
Converts the number of genes enriched as a double to a string representation |
void |
init()
Initializes the colors |
void |
mouseClicked(java.awt.event.MouseEvent e)
Responds to mouse clicked events |
void |
mouseEntered(java.awt.event.MouseEvent e)
Empty constructor method |
void |
mouseExited(java.awt.event.MouseEvent e)
Empty constructor method |
void |
mousePressed(java.awt.event.MouseEvent e)
Empty constructor method |
void |
mouseReleased(java.awt.event.MouseEvent e)
Empty constructor method |
void |
paint(java.awt.Graphics g)
Renders the interface by getting the interface option settings and then calling plotgenevalues |
void |
plotgenevalues(java.awt.Graphics2D g2,
double numassigned,
double numexpected,
double pvalue,
double[][] genevalues,
int[][] missing,
java.util.ArrayList[] bestAssignments,
double[] profilevals,
boolean[] sig,
java.util.ArrayList currProfileAssignments)
Responsible for rendering the profile window interface |
Methods inherited from class javax.swing.JFrame |
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addImpl, createRootPane, frameInit, getAccessibleContext, getContentPane, getDefaultCloseOperation, getGlassPane, getGraphics, getJMenuBar, getLayeredPane, getRootPane, getTransferHandler, isDefaultLookAndFeelDecorated, isRootPaneCheckingEnabled, paramString, processWindowEvent, remove, repaint, setContentPane, setDefaultCloseOperation, setDefaultLookAndFeelDecorated, setGlassPane, setIconImage, setJMenuBar, setLayeredPane, setLayout, setRootPane, setRootPaneCheckingEnabled, setTransferHandler, update |
Methods inherited from class java.awt.Frame |
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addNotify, getCursorType, getExtendedState, getFrames, getIconImage, getMaximizedBounds, getMenuBar, getState, getTitle, isResizable, isUndecorated, remove, removeNotify, setCursor, setExtendedState, setMaximizedBounds, setMenuBar, setResizable, setState, setTitle, setUndecorated |
Methods inherited from class java.awt.Window |
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addPropertyChangeListener, addPropertyChangeListener, addWindowFocusListener, addWindowListener, addWindowStateListener, applyResourceBundle, applyResourceBundle, createBufferStrategy, createBufferStrategy, dispose, getBufferStrategy, getFocusableWindowState, getFocusCycleRootAncestor, getFocusOwner, getFocusTraversalKeys, getGraphicsConfiguration, getIconImages, getInputContext, getListeners, getLocale, getModalExclusionType, getMostRecentFocusOwner, getOwnedWindows, getOwner, getOwnerlessWindows, getToolkit, getWarningString, getWindowFocusListeners, getWindowListeners, getWindows, getWindowStateListeners, hide, isActive, isAlwaysOnTop, isAlwaysOnTopSupported, isFocusableWindow, isFocusCycleRoot, isFocused, isLocationByPlatform, isShowing, pack, postEvent, processEvent, processWindowFocusEvent, processWindowStateEvent, removeWindowFocusListener, removeWindowListener, removeWindowStateListener, reshape, setAlwaysOnTop, setBounds, setBounds, setCursor, setFocusableWindowState, setFocusCycleRoot, setIconImages, setLocationByPlatform, setLocationRelativeTo, setMinimumSize, setModalExclusionType, setSize, setSize, setVisible, show, toBack, toFront |
Methods inherited from class java.awt.Container |
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add, add, add, add, add, addContainerListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalPolicy, getInsets, getLayout, getMaximumSize, getMinimumSize, getMousePosition, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, print, printComponents, processContainerEvent, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusTraversalKeys, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setFont, transferFocusBackward, transferFocusDownCycle, validate, validateTree |
Methods inherited from class java.awt.Component |
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action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBaseline, getBaselineResizeBehavior, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isOpaque, isPreferredSizeSet, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resize, resize, setBackground, setComponentOrientation, setDropTarget, setEnabled, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setLocation, setLocation, setMaximumSize, setName, setPreferredSize, show, size, toString, transferFocus, transferFocusUpCycle |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait |
Methods inherited from interface java.awt.MenuContainer |
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getFont, postEvent |
Constructor Detail |
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public ProfileGui(STEM_DataSet theDataSet, int nprofile, int[] ranklookup, java.util.HashSet inames, int ncompareprofile, java.lang.String szIntersect, java.lang.String szGene, java.lang.String szSpot, GenePlotPanel thegeneplotpanel, ChromFrame cf)
Method Detail |
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public void componentHidden(java.awt.event.ComponentEvent e)
componentHidden
in interface java.awt.event.ComponentListener
public void componentMoved(java.awt.event.ComponentEvent e)
componentMoved
in interface java.awt.event.ComponentListener
public void componentResized(java.awt.event.ComponentEvent e)
componentResized
in interface java.awt.event.ComponentListener
public void componentShown(java.awt.event.ComponentEvent e)
componentShown
in interface java.awt.event.ComponentListener
public java.lang.String enrichedToSz(double dexpected)
public void init()
public void mousePressed(java.awt.event.MouseEvent e)
mousePressed
in interface java.awt.event.MouseListener
public void mouseReleased(java.awt.event.MouseEvent e)
mouseReleased
in interface java.awt.event.MouseListener
public void mouseEntered(java.awt.event.MouseEvent e)
mouseEntered
in interface java.awt.event.MouseListener
public void mouseExited(java.awt.event.MouseEvent e)
mouseExited
in interface java.awt.event.MouseListener
public void drawintersectgo(java.awt.Color fillColor)
public void mouseClicked(java.awt.event.MouseEvent e)
mouseClicked
in interface java.awt.event.MouseListener
public static java.lang.String clusterArrayToString(java.util.ArrayList alcprofiles)
public void plotgenevalues(java.awt.Graphics2D g2, double numassigned, double numexpected, double pvalue, double[][] genevalues, int[][] missing, java.util.ArrayList[] bestAssignments, double[] profilevals, boolean[] sig, java.util.ArrayList currProfileAssignments)
public void paint(java.awt.Graphics g)
paint
in class java.awt.Container
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