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Class Summary |
| DataSetCore |
The class encapsulates a set of gene expression data |
| DataTable |
Class encapsulates a panel which is used to display the direct contents of a file in table format |
| GoAnnotations |
The class encapsulates the data and functions related to
the Gene Ontology and gene set enrichment analysis |
| GoAnnotations.GoRec |
Stores GO enrichment results for one category |
| GoAnnotations.GoResults |
Encapsulates a set of GO enrichment results |
| GoAnnotations.ProfileGORankingRec |
Stores info about a profile's ranking according to the current order by criteria |
| GoAnnotations.Rec |
Rec is a Gene Ontology hierarchy record
a GO ID will map to the record
A record contains a name and a set of parent records |
| GoAnnotations.RecCompare |
Comparator for GoRec based on actual size p-value |
| GoAnnotations.RecCompareBinom |
Comparator for GoRec based on expected size p-value |
| GoAnnotations.RecCount |
A count of the total count of the number of genes in a set (dtotal)
and the number selected based on the ordering criteria (dmatch) |
| GoAnnotations.RecIDpval |
A record containing a GO ID and a p-val |
| GoAnnotations.RecIDpval2 |
A record containing a GO ID and an actual and an expected size p-val |
| ListDialog |
|
| MultiLineHeaderRenderer |
Class implements multiple lines in a table header
Code based on
http://www.codeguru.com/java/articles/126.shtml |
| SpringUtilities |
Class for manipulating layout
Code from
http://java.sun.com/docs/books/tutorial/uiswing/examples/layout/SpringGridProject/src/layout/SpringUtilities.java
here is the copyright for that code
Copyright (c) 1995 - 2008 Sun Microsystems, Inc. |
| StatUtil |
The class implements static methods to compute values related to
the binomial, hypergeometric, and normal distribution |
| TableModelSetST |
Class implements a table model, which is used for the define gene set table |
| TableModelST |
Class implements a standard table model |
| TableSorter |
This class is a modifed version of the Java TableSorter class
http://java.sun.com/docs/books/tutorial/uiswing/examples/components/TableSorterDemoProject/src/components/TableSorter.java
Copyright for this sample code
==============================================================
Copyright (c) 1995 - 2008 Sun Microsystems, Inc. |
| Util |
Class of static utility functions and static variables |