edu.cmu.cs.sb.stem
Class CompareInfo
java.lang.Object
edu.cmu.cs.sb.stem.CompareInfo
public class CompareInfo
- extends java.lang.Object
Class encapsulates information on the comparison of two STEM data sets
focusing on identifying pairs of profiles with significant intersections
between them.
Constructor Summary |
CompareInfo(STEM_DataSet origset,
java.lang.String szcompare,
java.lang.String szmaxpval,
java.lang.String szminnumgenes,
java.util.Vector repeatnames,
boolean balltime,
ChromFrame cf)
Launches a maingui for the comparison data and finds the significant pairs of intersections |
Method Summary |
void |
findsigcompare()
Finds significant pairs of profiles from the two data sets interms of an intersection
exceeding nminnumgenes and p-value less than dmaxpval |
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
CompareInfo
public CompareInfo(STEM_DataSet origset,
java.lang.String szcompare,
java.lang.String szmaxpval,
java.lang.String szminnumgenes,
java.util.Vector repeatnames,
boolean balltime,
ChromFrame cf)
throws java.lang.Exception
- Launches a maingui for the comparison data and finds the significant pairs of intersections
- Throws:
java.lang.Exception
findsigcompare
public void findsigcompare()
- Finds significant pairs of profiles from the two data sets interms of an intersection
exceeding nminnumgenes and p-value less than dmaxpval