edu.cmu.cs.sb.core
Class GoAnnotations.ProfileGORankingRec

java.lang.Object
  extended by edu.cmu.cs.sb.core.GoAnnotations.ProfileGORankingRec
Enclosing class:
GoAnnotations

public static class GoAnnotations.ProfileGORankingRec
extends java.lang.Object

Stores info about a profile's ranking according to the current order by criteria


Field Summary
 double dclusterpval
          cluster enrichment p-value
 double dgenes
          Number of genes that are selected and belong to the profile
 double dgenescluster
          Number of genes that are selected and belong to the cluster
 double dgenestotal
          Number of genes that are selected
 double dmaxselect
          Number of genes that belong to the profile; max that could be selected in profile
 double dmaxselectcluster
          Number of genes that belong to the cluster; max that could be selected in cluster
 double dmaxselecttotal
          Total number of genes; max that could be selected
 double dpval
          profile enrichment p-value
 int ncluster
          Cluster profile belongs to, non-significant profiles have the greatest cluster value
 int nprofile
          profile id
 
Constructor Summary
GoAnnotations.ProfileGORankingRec(int nprofile, int ncluster, double dpval, double dclusterpval, double dgenes, double dmaxselect, double dgenescluster, double dmaxselectcluster, double dgenestotal, double dmaxselecttotal)
           
 
Method Summary
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Field Detail

nprofile

public int nprofile
profile id


ncluster

public int ncluster
Cluster profile belongs to, non-significant profiles have the greatest cluster value


dpval

public double dpval
profile enrichment p-value


dclusterpval

public double dclusterpval
cluster enrichment p-value


dgenes

public double dgenes
Number of genes that are selected and belong to the profile


dmaxselect

public double dmaxselect
Number of genes that belong to the profile; max that could be selected in profile


dgenescluster

public double dgenescluster
Number of genes that are selected and belong to the cluster


dmaxselectcluster

public double dmaxselectcluster
Number of genes that belong to the cluster; max that could be selected in cluster


dgenestotal

public double dgenestotal
Number of genes that are selected


dmaxselecttotal

public double dmaxselecttotal
Total number of genes; max that could be selected

Constructor Detail

GoAnnotations.ProfileGORankingRec

public GoAnnotations.ProfileGORankingRec(int nprofile,
                                         int ncluster,
                                         double dpval,
                                         double dclusterpval,
                                         double dgenes,
                                         double dmaxselect,
                                         double dgenescluster,
                                         double dmaxselectcluster,
                                         double dgenestotal,
                                         double dmaxselecttotal)