edu.cmu.cs.sb.core
Class GoAnnotations.GoRec

java.lang.Object
  extended by edu.cmu.cs.sb.core.GoAnnotations.GoRec
Enclosing class:
GoAnnotations

public static class GoAnnotations.GoRec
extends java.lang.Object

Stores GO enrichment results for one category


Field Summary
 double dcategoryall
          The number of genes in the category
 double dcategoryselect
          The number of genes in the category and in the set of interest
 double dcorrectedpvalue
          The corrected actual size based p-value
 double dcorrectedpvaluebinom
          The corrected expected size based p-value
 double dpvalue
          The uncorrected actual size based p-value
 double dpvaluebinom
          The uncorrected expected size based p-value
 java.lang.String szgocategory
          The name of the category
 java.lang.String szgoid
          The ID of the category
 
Constructor Summary
GoAnnotations.GoRec(double dcategoryselect, double dcategoryall, double dpvalue, java.lang.String szgocategory, java.lang.String szgoid)
          Constructor without expected size based p-value
 
Method Summary
 void print()
          Prints the contents of all the variables in the record
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Field Detail

dcategoryselect

public double dcategoryselect
The number of genes in the category and in the set of interest


dcategoryall

public double dcategoryall
The number of genes in the category


dpvalue

public double dpvalue
The uncorrected actual size based p-value


dpvaluebinom

public double dpvaluebinom
The uncorrected expected size based p-value


szgoid

public java.lang.String szgoid
The ID of the category


szgocategory

public java.lang.String szgocategory
The name of the category


dcorrectedpvalue

public double dcorrectedpvalue
The corrected actual size based p-value


dcorrectedpvaluebinom

public double dcorrectedpvaluebinom
The corrected expected size based p-value

Constructor Detail

GoAnnotations.GoRec

public GoAnnotations.GoRec(double dcategoryselect,
                           double dcategoryall,
                           double dpvalue,
                           java.lang.String szgocategory,
                           java.lang.String szgoid)
Constructor without expected size based p-value

Method Detail

print

public void print()
Prints the contents of all the variables in the record