edu.cmu.cs.sb.stem
Class CompareInfo

java.lang.Object
  extended by edu.cmu.cs.sb.stem.CompareInfo

public class CompareInfo
extends java.lang.Object

Class encapsulates information on the comparison of two STEM data sets focusing on identifying pairs of profiles with significant intersections between them.


Constructor Summary
CompareInfo(STEM_DataSet origset, java.lang.String szcompare, java.lang.String szmaxpval, java.lang.String szminnumgenes, java.util.Vector repeatnames, boolean balltime, ChromFrame cf)
          Launches a maingui for the comparison data and finds the significant pairs of intersections
 
Method Summary
 void findsigcompare()
          Finds significant pairs of profiles from the two data sets interms of an intersection exceeding nminnumgenes and p-value less than dmaxpval
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

CompareInfo

public CompareInfo(STEM_DataSet origset,
                   java.lang.String szcompare,
                   java.lang.String szmaxpval,
                   java.lang.String szminnumgenes,
                   java.util.Vector repeatnames,
                   boolean balltime,
                   ChromFrame cf)
            throws java.lang.Exception
Launches a maingui for the comparison data and finds the significant pairs of intersections

Throws:
java.lang.Exception
Method Detail

findsigcompare

public void findsigcompare()
Finds significant pairs of profiles from the two data sets interms of an intersection exceeding nminnumgenes and p-value less than dmaxpval