NATURAL POLYMERS MU SCI 8 2018 1 NATURAL POLYMERS PROTEINS I Dr. Ladislav Pospíšil January 8/2018 Time schedule January 8/2018 NATURAL POLYMERS MU SCI 8 2018 2 LECTURE SUBJECT 1 Introduction to the subject – Structure & Terminology of nature polymers, literature 2 Derivatives of acids – natural resins, drying oils, shellac 3 Waxes 4 Plant (vegetable) gums, Polyterpene – natural rubber (extracting, processing and modification), Taraxacum_kok-saghyz 5 Polyphenol – lignin, humic acids 6 Polysaccharides I – starch 7 Polysaccharides II – celullose 8 Protein fibres I 9 Protein fibres II 10 Casein, whey, protein of eggs 11 Identification of natural polymers Laboratory methods of natural polymers’ evaluation 1.Chemistry of Peptides and Proteins 2.Supermolecular Structure of Peptides and Proteins January 8/2018 NATURAL POLYMERS MU SCI 8 2018 3 Chemistry of Peptides and Proteins January 8/2018 NATURAL POLYMERS MU SCI 8 2018 4 AminoAcidball_svg.png In the structure shown BELLOW the SLIDE, R represents a side chain specific to each amino acid. The carbon atom next to the carboxyl group (which is therefore numbered 2 in the carbon chain starting from that functional group) is called the α–carbon. Amino acids containing an amino group bonded directly to the alpha carbon are referred to as alpha amino acids. These include amino acids such as PROLINE which contain secondary amines, which used to be often referred to as "imino acids". Chemistry of Peptides and Proteins January 8/2018 NATURAL POLYMERS MU SCI 8 2018 5 Amino_acid_zwitterions_svg.png D+L-Alanine.gif Beta_alanine_comparison_svg.png β-alanine and its α-alanine isomer An amino acid in its (1) un-ionized and (2) zwitterionic forms amfion Převzato z NĚMČINY Chemistry of Peptides and Proteins January 8/2018 NATURAL POLYMERS MU SCI 8 2018 6 Lysine_fisher_structure_and_3d_ball_svg.png LYSINE– it has „LENT“ one H+ Cation here ! January 8/2018 NATURAL POLYMERS MU SCI 8 2018 7 Amino acids are the structural units (monomers) that make up proteins. They join together to form short polymer chains called peptides or longer chains called either polypeptides or proteins. These polymers are linear and unbranched, with each amino acid within the chain attached to two neighboring amino acids. Twenty-two amino acids are naturally incorporated into polypeptides and are called proteinogenic or natural amino acids. Proteinogenic amino acids are amino acids that are incorporated biosynthetically into proteins during translation. The word "proteinogenic" means "protein creating". Throughout known life, there are 22 genetically encoded (proteinogenic) amino acids, 20 in the standard genetic code and an additional 2 that can be incorporated by special translation mechanisms A peptide bond, also known as an amide bond, is a covalent chemical bond linking two consecutive amino acid monomers along a peptide or protein chain. The peptide bond is synthesized when the carboxyl group of one amino acid molecule reacts with the amino group of the other amino acid molecule, causing the release of a molecule of water (H2O), hence the process is a dehydration synthesis reaction (also known as a condensation reaction). Chemistry of Peptides and Proteins January 8/2018 NATURAL POLYMERS MU SCI 8 2018 8 731px-Peptidformationball_svg.png January 8/2018 NATURAL POLYMERS MU SCI 8 2018 9 576px-AminoacidCondensation_svg WIKI ENG 22012018.png A peptide bond, also known as an amide bond, is a covalent chemical bond linking two consecutive amino acid monomers along a PEPTIDE or PROTEIN CHAIN PEPTIDES are short chains of amino acid monomers linked by peptide (amide) bonds. PROTEINS are large biomolecules, or macromolecules, consisting of one or more long chains of amino acid residues. A linear chain of amino acid residues is called a polypeptide. A protein contains at least one long polypeptide. Short polypeptides, containing less than 20–30 residues, and are commonly called peptides, or sometimes oligopeptides. Chemistry of Peptides and Proteins HIERARCHI January 8/2018 NATURAL POLYMERS MU SCI 8 2018 10 AMINOACID = monomer PEPTID = oligomer PROTEIN = polymer January 8/2018 NATURAL POLYMERS MU SCI 8 2018 11 AminoACIDS with aliphatic Side chain Glycine Gly (G) Alanine Ala (A) Valine Val (V) Leucine Leu (L) Isoleucine Ile (I) AminoACIDS with Carboxyl or Amide Group in the Side chain (Acid Groups) Asparagic Acid Asp (D) Asparagine Asn (N) Glutamic Acid Glu (E) Glutamine Gln (Q) AminoACIDS with Amine Group in the Side chain (Basic Groups) Arginine Arg (R) Lysine Lys (K) AminoACIDS with Aromatic nucleus (ring) or Hydroxyl Group in the Side chain Histidine His (H) Phenylalanine Phe (F) Serine Ser (S) Threonin Thr (T) Tyrozine Tyr (Y) Tryptophane Trp (W) January 8/2018 NATURAL POLYMERS MU SCI 8 2018 12 AminoACIDS with Sulphur Atom in the Side chain Methionine Met (M) Cysteine Cys (C) AminoACIDS with the SECONDARY AMINE ProlinE Pro (P) 21. AminoACID (CONTAINING Se) SelenocysteinE SeCys 22. AminoACID Pyrolysine Pyl Chemistry of Peptides and Proteins January 8/2018 NATURAL POLYMERS MU SCI 8 2018 13 Class Name of the amino acids Aliphatic Glycine, Alanine, Valine, Leucine, Isoleucine Hydroxyl or Sulfur-containing Serine, Cysteine, Threonine, Methionine Cyclic Proline Aromatic Phenylalanine, Tyrosine, Tryptophan Basic Histidine, Lysine, Arginine Acidic and their Amide Aspartate, Glutamate, Asparagine, Glutamine January 8/2018 NATURAL POLYMERS MU SCI 8 2018 14 Biogenic aminoacids Glycine (Gly, G) Alanine (Ala, A) Valine (Val, V) Leucine (Leu, L) Isoleucine (Ile, I) Amminoacido_glicina_formula.png Amminoacido_alanina_formula.png Amminoacido_valina_formula.png Amminoacido_leucina_formula.png Amminoacido_isoleucina_formula.png January 8/2018 NATURAL POLYMERS MU SCI 8 2018 15 Biogenní aminokyseliny Threonine (Thr, T) Tyrosine (Tyr, Y) Methionine (Met, M) Cysteine (Cys Amminoacido_treonina_formula.png Amminoacido_tirosina_formula.png 115px-Amminoacido_metionina_formula.png 95px-Amminoacido_cisteina_formula.png January 8/2018 NATURAL POLYMERS MU SCI 8 2018 16 Biogenní aminokyseliny Lysine (Lys, K) Asparagová ACID (Asp, D) Asparagine (Asn, N) Glutamic ACID (Glu, E) Glutamine (Gln, Q) Amminoacido_lisina_formula.png Amminoacido_asparagina_formula.png Amminoacido_acido_aspartico_formula.png Amminoacido_glutammina_formula.png Amminoacido_glutammina_formula.png January 8/2018 NATURAL POLYMERS MU SCI 8 2018 17 Biogenní aminokyseliny Arginine (Arg, R) Histidine (His, H) Phenylalanine (Phe, F) Tryptofane (Trp, W) Proline (Pro, P) Amminoacido_arginina_formula.png Amminoacido_istidina_formula.png Amminoacido_fenilalanina_formula.png Amminoacido_triptofano_formula.png 800px-Amminoacido_prolina_formula_svg.png January 8/2018 NATURAL POLYMERS MU SCI 8 2018 18 Biogenní aminokyseliny Selenocysteine (SeCys,U) Pyrolysine (Pyl,O) Serine (Ser, S) N-formylmethionine (fMet) 711px-L-selenocysteine-2D-skeletal.png 560px-Pyrrolysine_svg.png 430px-(S)-N-Formylmethionine_V_1_svg.png Amminoacido_serina_formula.png Chemistry of Peptides and Proteins January 8/2018 NATURAL POLYMERS MU SCI 8 2018 19 img773.jpg img774.jpg img777.jpg The Rest of N- ending Amino acid The Rest of C- ending Amino acid Peptide Chains are written horizontally using the Abbreviations of the particular Amino acids. An Example showing the Structure of the Oxitocine Hormone is as follows: An Example showing the Structure of the Horse Insulin Hormone (M = 5 802, containing 51 Amino acids) is as follows: January 8/2018 NATURAL POLYMERS MU SCI 8 2018 20 SCLEROPROTEINS or fibrous proteins The roles of such proteins include protection and support, forming connective tissue, tendons, bone matrices, and muscle fiber. A SCLEROPROTEIN forms long protein filaments, which are shaped like rods or wires. SCLEROPROTEINS are structural proteins or storage proteins that are typically inert and water-insoluble. A SCLEROPROTEIN occurs as an aggregate due to hydrophobic side chains that protrude from the molecule. A SCLEROPROTEIN'S peptide sequence often has limited residues with repeats; these can form unusual secondary structures, such as a collagen helix. The structures often feature cross-links between chains (e.g., cys-cys disulfide bonds between keratin chains). January 8/2018 NATURAL POLYMERS MU SCI 8 2018 21 Composition of the Fibrous Proteins Aminoacid R Aminoacid Content (% Molar) H2N-CHR-COOH (Abbreviation) Merino Wool Silk Fibroin Beef Collagen Glycine (Gly) -H 59,4 44,8 38,0 Alanine (Ala) -CH3 15,7 29,4 11,9 Valine (Val) -CH(CH3)2 5,8 2,2 2,2 Leucine (Leu) -CH-CH(CH3)2 7,9 0,5 2,8 Isoleucine (Ile) -CH2-C6H5 3,3 0,7 1,3 Serine (Ser) -CH2-OH 11,8 12,1 1,5 Threonine (Thr) -CH(CH3)OH 7,6 0,9 4,3 Tyrosine (Tyr) -CH2C6H4OH 4,8 5,2 1,9 January 8/2018 NATURAL POLYMERS MU SCI 8 2018 22 Composition of the Fibrous Proteins Aminoacid R Aminoacid Content (% w/w) H2N-CHR-COOH (Abbreviation) Merino Wool Silk Fibroin Beef Collagen Tryptophan (Trp) 1,4 0,2 --- Lysine (Lys) -(CH2)4NH2 2,6 0,3 2,8 Arginine (Arg) -(CH2)2 –N=C(NH2)2 8,2 0,5 5,4 Histidine (His) 0,8 0,2 0,5 Hydroxylysine -(CH2)2CH(OH)CH2NH2 Traces --- 0,8 Asparagic Acid (Asp) -CH2COOH 6,9 1,3 0,1 Glutamic Acid (Glu) -(CH2)2COOH 13,8 1,0 0,1 Methionine (Met) -(CH2)2SCH3 0,5 0,1 0,8 Amminoacido_triptofano_formula.png Amminoacido_istidina_formula.png January 8/2018 NATURAL POLYMERS MU SCI 8 2018 23 Composition of the Fibrous Proteins Aminoacid R Aminoacid Content (% w/w) H2N-CHR-COOH (Abbreviation) Merino Wool Silk Fibroin Beef Collagen Cystine (Cys-S-S-Cys) -CH2-S-S-CH2CH(NH2)COOH 6,4 0,1 --- Cystein (Cys) -CH2SH 0,4 --- --- Proline (Pro) --- --- 4,81, Hydroxyproline --- --- 10,3 Lanthonine -CH2-S-CH2CH(NH2)COOH 0,01 --- --- 800px-Amminoacido_prolina_formula_svg.png 800px-Amminoacido_prolina_formula_svg.png Chemistry of Peptides and Proteins January 8/2018 NATURAL POLYMERS MU SCI 8 2018 24 img778.jpg The Characteristic Bonds which determine Protein Conformation are in the following Formulas: Hydrogen Bond Ionic Bond Cystein disulfide Bond January 8/2018 NATURAL POLYMERS MU SCI 8 2018 25 Sekundární struktura bílkovin 002.jpg Sekundární struktura bílkovin 003.jpg Chemistry of Peptides and Proteins January 8/2018 NATURAL POLYMERS MU SCI 8 2018 26 The isoelectric point (pI, pH(I), IEP), is the pH at which a particular molecule carries no net electrical charge in the statistical mean. The standard nomenclature to represent the isoelectric point is pH(I), although pI is also commonly seen, and is used in this article for brevity. The net charge on the molecule is affected by pH of its surrounding environment and can become more positively or negatively charged due to the gain or loss, respectively, of protons (H+). IZOELECTRIC POINT OF Glycine_pI WIKI ENG.png IZOELEKTRICKÝ BOD WIKI ENG 1 ADENOSIE MONO PHOSPHATE.png glycine pK = 2.72, 9.60 adenosine monophosphate pK = 2.15, 9.16, 10.67 Chemistry of Peptides and Proteins January 8/2018 NATURAL POLYMERS MU SCI 8 2018 27 For an amino acid with only one amine and one carboxyl group, the pI can be calculated from the mean of the pKas of this molecule. pI = (pKa + pKb)/2 Each Amino acid contains at least two Groups, which are able to dissociate giving: -COOH a -NH3+ and they form conjugated Bases -COO- a -NH2. The Acid and their conjugated Base are in the proton Equilibrium: R-COOH ↔ R-COO− + H+R-NH3+ ↔ R-NH2 + H+ It is depends on the Environments (Conditions) pH Value, so on the H+ Concentration, how is the Equivalence set. The Carboxylic Group is the stronger Acid and so the H+ is easily cleaved from this Group then taken by this Group. January 8/2018 NATURAL POLYMERS MU SCI 8 2018 28 Name pK pI at 25°C pK α-CO2H pK NH3 pK R-group Alanine 2.35 9.87 6.11 Arginine 2.18 9.09 13.2 10.76 Asparagine 2.18 9.09 13.2 10.76 Aspartic Acid 1.88 9.60 3.65 2.98 Cysteine 1.71 10.78 8.33 5.02 Glutamic Acid 2.19 9.67 4.25 3.08 Glutamine 2.17 9.13 5.65 Glycine 2.34 9.60 6.06 Histidine 1.78 8.97 5.97 7.64 Isoleucine 2.32 9.76 6.04 Leucine 2.36 9.60 6.04 Lysine 2.20 8.90 10.28 9.47 Methionine 2.28 9.21 5.74 Phenylalanine 2.58 9.24 5.91 Proline 1.99 10.60 6.30 Serine 2.21 9.15 5.68 Threonine 2.15 9.12 5.60 Tryptophan 2.38 9.39 5.88 Tyrosine 2.20 9.11 10.07 5.63 Valine 2.29 9.74 6.02 pK and pl Values of Amino Acids Chemistry of Peptides and Proteins January 8/2018 NATURAL POLYMERS MU SCI 8 2018 29 Essential Nonessential Histidine Alanine Isoleucine Arginine* Leucine Asparagine Lysine Aspartic acid Methionine Cysteine* Phenylalanine Glutamic acid Threonine Glutamine* Tryptophan Glycine Valine Ornithine* Proline* Selenocysteine* Serine* Tyrosine (*) Essential only in certain cases Of the 22 standard amino acids, 9 are called essential amino acids because the human body cannot synthesize them from other compounds at the level needed for normal growth, so they must be obtained from food.[52] In addition, cysteine, taurine, tyrosine, and arginine are considered semiessential amino-acids in children (though taurine is not technically an amino acid), because the metabolic pathways that synthesize these amino acids are not fully developed.[53][54] The amounts required also depend on the age and health of the individual, so it is hard to make general statements about the dietary requirement for some amino acids. Amino acid > Peptide > Protein •Amino acid – monomer, L- configuration only •Peptide – it has less then 50 Amino acids, it is MW up to approx. 5*105, it goes through Cellophane membrane at DIALYSIS •Protein – MW is over approx. 5*105 to X*106, X Î(1;10) •Determination of the Peptide and Protein Composition •Acid hydrolysis to Amino acids •Chromatography (Thin layer, GPC) • January 8/2018 NATURAL POLYMERS MU SCI 8 2018 30 PEPTIDES X PROTEINS •PEPTIDES •It contains b and g Amino acids also •Configuration both D and L •It belongs here: •GLUTATHIONE (biological redox system) •HORMONE •ANTIBIOTICS •TOXINE (death angel and the other TOXIC mushrooms, bee poison etc.) • •PROTEINS • a Amino acids only •Configuration D only January 8/2018 NATURAL POLYMERS MU SCI 8 2018 31 Structure Hierarchie of Peptides and Proteins •Primary structure – the Amino acids Sequence of the Protein •Secondary structure – No covalent Interactions in the Backbone of the one Polypeptide (Protein) Chain, usually the near Parte of the Backbone (a – Helix and/or b - Sheet) •Tertiary structure – various Interactions between the Backbones of more then the one Polypeptide (Protein) Chain of Chains or remote NO neighbouring) Segments of one Chain •Quaternary structure – Interactions between the Chain Bundles, between the Tertiary structures •Tertiary & Quaternary Structures – we give attention to this in the next Lesson! January 8/2018 NATURAL POLYMERS MU SCI 8 2018 32 January 8/2018 NATURAL POLYMERS MU SCI 8 2018 33 CAM00548.jpg Proteins dividing – the Occurrence of other Components in Macromolecule accordingly January 8/2018 NATURAL POLYMERS MU SCI 8 2018 34 •Simple protein – they are broken by Hydrolysis to Amino acids only •Compound protein – they are broken by Hydrolysis to Amino acids, Saccharides, Fats, … –LIPOPROTEINE (Fats) –GLYKOPROTEINE (Saccharides) –FOSFOPROTEINE (Phosphate groups > KASEIN) –CHROMOPEROTEINE (Colorants, e.g. Haemoglobin, Melamine) – • SOLUBILITY versus SWELING January 8/2018 NATURAL POLYMERS MU SCI 8 2018 35 rozpust verus botnání.jpg Biopolymer Molecule Biopolymer Backbone Water or the other Solvent (Solvating Agent) Molecule Proteins dividing – Macromolecules’ Solubility in Water of accordingly January 8/2018 NATURAL POLYMERS MU SCI 8 2018 36 •SOLUBLE (SFEROPROTEINE) –HEAT > COAGULATION –Albumin > Egg white –Glutelin > Glutelin from Wheat •UNSOLUBLE (SKLEROPROREINE) –Keratin a and b –Collagen – – • Proteins dividing – Macromolecules’ Shape and Supermolecular Structure accordingly January 8/2018 NATURAL POLYMERS MU SCI 8 2018 37 •FIBRILAR > natural/genuine Silk, Hair, animal Hair, Muscles, fibrous connective Tissue •GLOBULAR > ENZYM, Egg white, Milk white, INSULIN, … • PRIMARY STRUKTURE of Proteine I January 8/2018 NATURAL POLYMERS MU SCI 8 2018 38 Protein_primary_structure_svg.png Proteines Molecular Weight January 8/2018 NATURAL POLYMERS MU SCI 8 2018 39 C:\Users\ladapospa\Documents\Lada\PŘÍRODNÍ POLYMERY SCAN SKRIPT VŠCHT Praha 1990\str 345.jpg Protein MW (Relativ, Mean) I do not know, if it is the Mn or the Mw Tobacco mosaic virus PRIMARY PROTEINS STRUCTURE II DETERMINATION OF THE AMINO ACIDS’ SEQUENCE •PROTEINS are broken (cleaved) to Amino acids by ENZYMS - the given ENZYM break (cleave) only the Bond between the Definite AMINO ACIDS •Using the Different ENZYMS - Different Grafts (Broken Parts) > AMINO ACIDS SEQUENCE Determination • January 8/2018 NATURAL POLYMERS MU SCI 8 2018 40 PRIMARY PROTEINS STRUCTURE III DETERMINATION OF THE AMINO ACIDS’ SEQUENCE January 8/2018 NATURAL POLYMERS MU SCI 8 2018 41 •Breaking (Cleaving) on the well define points (only the Bond between the Definite AMINO ACIDS ) to shorter Parts by ENZYMS „RESTRICTIVE ENDONUCLEASES“ (their Number is approx. 200 Types) •Consecutive Breaking (Cleaving) of this shorter Parts taken by Primary Breaking (Cleaving) by „RESTRICTIVE ENDONUCLEASES“ again, but other Types then used primary •Electrophoretic Sorting (Separation) of the Grafts (Broken Parts) •Computer Processing of the Results • 800px-Sanger_sequencing_read_display.gif PROTEIN SECUNDARY STRUCTURE I January 8/2018 NATURAL POLYMERS MU SCI 8 2018 42 Hierarchie struktur bílkovin 001.jpg PROTEIN SECUNDARY STRUCTURE II A January 8/2018 NATURAL POLYMERS MU SCI 8 2018 43 Left-handed Helix Sekundární struktura bílkovin 001.jpg PROTEIN SECUNDARY STRUCTURE II B January 8/2018 NATURAL POLYMERS MU SCI 8 2018 44 img779.jpg Left-handed a Helix b Skládaný list PROTEIN SECUNDARY STRUCTURE III January 8/2018 NATURAL POLYMERS MU SCI 8 2018 45 ALFA versus BETA šroubovice aminokyselin scan 04082017.jpg 400px-Cartesian_coordinate_system_handedness_svg.png Right-handed RIGHT HAND > thumb UP > Fingers round oriented in the Row Direction Left-handed Helix Right-handed Helix Left-handed LEFT HAND > thumb UP > Fingers round oriented in the Row Direction PROTEIN SECUNDARY STRUCTURE IV January 8/2018 NATURAL POLYMERS MU SCI 8 2018 46 img779.jpg ALFA HELIX 04082017.jpg Left-handed a Helix Right-handed a Helix Casein – the main Amino acid Components •Glutamic acid (Glu, E) • • January 8/2018 NATURAL POLYMERS MU SCI 8 2018 47 Amminoacido_glutammina_formula.png Proline (Pro, P) 800px-Amminoacido_prolina_formula_svg.png img780.jpg Casein is the PHOSPHOPROTEID Amminoacido_serina_formula.png Serine (Ser, S) January 8/2018 NATURAL POLYMERS MU SCI 8 2018 48 Amino acids Content in various Proteins Amino acid PROTEIN Gelatine Casein Egg white Egg yellow (Molar %) Hydroxyproline 6 0 0 0 Asparagic acid 4 6 10 11 Theorine 2 3 4 6 Serine 4 5 7 11 Glutamic acid 7 18 12 13 Proline 12 15 5 5 Glycine 35 3 6 6 Alanine 12 4 9 8 Valine 2 8 9 7 ½ Cystine 0 0 2 2 Methionine 1 2 1 2 January 8/2018 NATURAL POLYMERS MU SCI 8 2018 49 Amino acids Content in various Proteins Amino acid PROTEIN Gelatine Casein Egg white Egg yellow (Molar %) Isoleucine 1 6 6 5 Leucine 3 9 10 9 Thyrosine 0 4 1 2 Phenylalanine 1 4 4 3 Lysine 3 6 7 5 Histidine 1 3 2 2 Arginine 5 3 5 4 Gelatine = Denaturated Collagen Casein – characteristics January 8/2018 NATURAL POLYMERS MU SCI 8 2018 50 CASEIN versus QUARK CASEIN is manufactered from the skimmed (fat-free) MILK, THE HIGH FAT CONTENT IS a DEFECT! QUARK is manufactered from the Whole (fat) MILK, but it can be also manufactered as the Fat-free or Low Fat Product! Cacein Type (Sort) Water Fat Ash Acidity Acid, grain 9,5 0,3 1,7 9,9 Acid, Cheese, Lumps 7,8 0,4 4,1 7,6 Acid, Salt, Lumps 7,1 0,2 5,7 6,7 Rennet coagulated 8,3 0,6 8,0 7,9 Casein – Charasteristics •Protein Part of Milk •Four Types of Casein recognised: aS1, aS2, b, k (kappa) •Casein is gained by precipitating of Milk using Acids or Enzymes •MW = approx. 75 000 – 350 000 •Insoluble in Water •Soluble in Acids or Bases •Alkali Solutions have the dispergation (dispersion) Ability January 8/2018 NATURAL POLYMERS MU SCI 8 2018 51 From Casein to Cheese January 8/2018 NATURAL POLYMERS MU SCI 8 2018 52 •Casein –ENZYMEs •PROTEASE - it cleavages peptide Bond in the Middle of the Casein Backbone > ALBUMOSE & PEPTONS are the Results •PEPTIDASE - it cleavages peptide Bond on the End the Casein Backbone •AMINASE – it cleavages Amino acids (UNDSIBABLE) •Cheese = cleavaged CASEIN •„Holes “ in Cheese = it is done by Bacterias & Enzymes, which release CO2 January 8/2018 NATURAL POLYMERS MU SCI 8 2018 53 CASEIN Protease Aminopolypeptidase Albumose Peptones Polypeptidase Polypeptides (PROTEINS) Dipeptidase Dipeptides Aminoacids Amidase Desamidase NH3, volatile acids, H2S ENZYMS ALBUMOSE: Any of a class of substances derived from albumins and formed by the enzymatic breakdown of proteins during digestion PEPTONES: Any of various water-soluble protein derivatives formed by partial hydrolysis or digestion of proteins by an acid or enzyme, used in culture media in bacteriology. January 8/2018 NATURAL POLYMERS MU SCI 8 2018 54 PEPTONES - they are Proteins in general or the Mixture of Proteins which results from Proteins by partial Hydrolysis done by Enzyme Pepsin and HCl in Stomach It is stated, that PEPTONES have 3 – 4 Amino acids. PEPTONES are further cleaved in the Small intestine by Trypsin and Chymotripsin, which are further cleaved in to the individual Amino acids. ALBUMOSE – they are only the shorter Proteins from CASEIN Casein – Use •Glus •Paints •Galalit (Thermoset crosslinked by FORMALDEHYDE) •………….. January 8/2018 NATURAL POLYMERS MU SCI 8 2018 55 Galalit is coming back (returning)! January 8/2018 NATURAL POLYMERS MU SCI 8 2018 56 GALALIT z KASEINU002.jpg January 8/2018 NATURAL POLYMERS MU SCI 8 2018 57 VÝROBA KASEINU PRŮMYSLOVÁ 05122016.jpg Acid Dosing (HCl or H2SO4) First Washing Trough Second Washing Trough + Chopper Trough Continual Manufacture of CASEIN The BYPRODUCT is WHEY (Proteins, Saccharides, Inorganic Substances etc. …) MILK Packing Tunnel Dryer Precipitation & Washing January 8/2018 NATURAL POLYMERS MU SCI 8 2018 58 C:\Users\ladapospa\Documents\Lada\GRANT LABORKY PŘÍRODNÍ POLYMERY 2016\Galalith_Synthesis_SCHEMATIC_V1.png CASEIN Crosslinking by Formaldehyde Procedure : • Prepare formulation from the CASEIN Paste, pour it into 4 % w/w Formaldehyde and leave it mature several Days • Form the Product from the CASEIN Paste + Formaldehyde (approx. 5 – 10 parts of CASEIN + 1 part of Formaldehyde , leave it several Hours or several Days mature at Temperature of 30 – 40 °C Casein Glues •CASEIN Glue with Ammonia : •50 g of pure (industrial Grade) CASEIN is mixed with 250 ml Water and is slightly heated. •15 g of Ammonia is mixed with a bit of Water and is poured into heated CASEIN. The Solution boils over and CO2 is released. CASEIN Glue is mixed up to point, when the releasing of CO2 is finished. •CASEIN Glue with Lime: •4 Parts of Fat free QUARK is mixed with 1 Part of well matured (two Years old) Ca(OH)2. The Glue is finished after 10 Minutes. CASEIN Glue with Lime must be freshly prepared every Day. It is diluted by 2 – 3 Parts of Water if used for binding Agent for Paints. •CASEIN Glue with NaHCO3: •50 g of NaHCO3 is dissolved in hot Water is chilled at continuous mixing. Add 500 g of Fat free QUARK and mix it in the Kitchen mixer. Leave it stay for 30 Minutes. Dilute it by cold Water to desired Consistency. CASEIN Glue with NaHCO3 is suitable as the Glue and/or binding Agent for Paints. • • January 8/2018 NATURAL POLYMERS MU SCI 8 2018 59 Casein Paints January 8/2018 NATURAL POLYMERS MU SCI 8 2018 60 •CASEIN Glue – a simple Recipe: •One Soup Spun (approx. 10 g) of Borax (Na2[B4O5(OH)4]·8H2O) is dissolved in approx. 250 ml of Water. Fat free QUARK is mixed with the Borax Solution. Leave it stay for 20 Minutes and mix one more. •CASEIN based Paints working: •The Pigments are mixed with a bit of Water to a Paste. Mix 1 Part of the Coloured Paste with 1 Part CASEIN Glue and 3 Parts of Water. •CASEIN based Wall Paint: 1.2 kg fat free QUARK 2.90 g of Borax (Na2[B4O5(OH)4]·8H2O) is dissolved in 500 ml of Water and this Solution is mixed together 3.Mix it in the Kitchen mixer for 20 Minutes and leave it for 20 Minutes stay 4.It is diluted by 8 Litres of Water for basic Painting 5.Mix 1 – 2 Parts of the Pigments Water Paste with 1 Part of the CASEIN Glue and 2 – 3 Parts of Water . Egg Proteins – the main Amino acids Components •Glutamic acid (Glu, E) • • January 8/2018 NATURAL POLYMERS MU SCI 8 2018 61 Amminoacido_glutammina_formula.png Amminoacido_serina_formula.png Serine (Ser, S) Amminoacido_leucina_formula.png Leucine (Leu, L) Amminoacido_glicina_formula.png Glycine (Gly, G) January 8/2018 NATURAL POLYMERS MU SCI 8 2018 62 Amino acids Content in various Proteins Amino acid PROTEIN Gelatine Casein Egg white Egg yellow (Molar %) Hydroxyproline 6 0 0 0 Asparagic acid 4 6 10 11 Theorine 2 3 4 6 Serine 4 5 7 11 Glutamic acid 7 18 12 13 Proline 12 15 5 5 Glycine 35 3 6 6 Alanine 12 4 9 8 Valine 2 8 9 7 ½ Cystine 0 0 2 2 Methionine 1 2 1 2 January 8/2018 NATURAL POLYMERS MU SCI 8 2018 63 Amino acids Content in various Proteins Amino acid PROTEIN Gelatine Casein Egg white Egg yellow (Molar %) Isoleucine 1 6 6 5 Leucine 3 9 10 9 Thyrosine 0 4 1 2 Phenylalanine 1 4 4 3 Lysine 3 6 7 5 Histidine 1 3 2 2 Arginine 5 3 5 4 Gelatine = Denaturated Collagen January 8/2018 NATURAL POLYMERS MU SCI 8 2018 64 Denaturation is a process in which proteins or nucleic acids lose the quaternary structure, tertiary structure and secondary structure which is present in their native state, by application of some external stress or compound such as a strong acid or base, a concentrated inorganic salt, an organic solvent (e.g., alcohol or chloroform), radiation or heat.[3] If proteins in a living cell are denatured, this results in disruption of cell activity and possibly cell death. Denatured proteins can exhibit a wide range of characteristics, from loss of solubility to communal aggregation Protein_Denaturation.png 290px-Chemical_precipitation_diagram_svg.png COAGULATION BY HEAT ANALOGY with paper Clips Egg Proteins – Use1 •Paints January 8/2018 NATURAL POLYMERS MU SCI 8 2018 65 LECITHIN 800px-1-Oleoyl-2-almitoyl-phosphatidylcholine_Structural_Formulae_V_1.png PHOSPHOLIPID LECITINE – emulsifying Agent It is Part of the Egg yellow, but is NOT its Protein Part Egg Proteins – USE 2 •Paints January 8/2018 NATURAL POLYMERS MU SCI 8 2018 66 CHOLESTEROL – STEROID & emulsifying AgentIt is Part of the Egg yellow, but is NOT its Protein Part 440px-Cholesterol_svg.png January 8/2018 NATURAL POLYMERS MU SCI 8 2018 67 600px-Luteine_-_Lutein_svg.png Luteine - Colorant in the Egg yellow Chemical Name β,ε-karoten-3,3'-diol Summary Formula C40H56O2 CAS registration Number 127-40-2 Appearance Solid, red – orange Crystalic Matter Molar Mass 568,871 g/mol Melting Temperature 190 °C Solubility in Water no Solubility in Fats yes It is Part of the Egg yellow, but is NOT its Protein Part Egg White &Drinks January 8/2018 NATURAL POLYMERS MU SCI 8 2018 68 • Clarifying of Fruit Juices • Probably the oldest Clarifying Agent for Fruit Juices and Wine Whey January 8/2018 NATURAL POLYMERS MU SCI 8 2018 69 •Whey is a yellow-green Liquid, which is the Rest gained after precipitation of Milk using Acids or Enzymes. Whey is in fact Milk Serum. It looks like in Practise, that the Milk is precipitated and the Solid Part is CASEIN and the Liquid Part is Whey. •Dried Whey arises also as the By-product at Manufacture of Cheese and/or QUARK. •Whey contains Vitamins B1, B2, B6, B12 and further Vitamins C and E. As to Inorganic Elements it contains Mg, P, Ca, K, Na, Zn. It contains also the Saccharide LACTOSE. •Whey has antiflammable Effect when used externally, so it is suitable for the sensitive Skin also. The other Uses as Dermatologic Agents are also widely used. Whey –contained PROTEINS January 8/2018 NATURAL POLYMERS MU SCI 8 2018 70 •Whey protein is a mixture of globular proteins isolated from whey •Whey protein is the collection of globular proteins isolated from whey, a by-product of cheese manufactured from cow's milk. The protein in cow's milk is 20% whey protein and 80% casein protein, whereas the protein in human milk is 60% whey and 40% casein. The protein fraction in whey constitutes approximately 10% of the total dry solids in whey. This protein is typically a mixture of beta-lactoglobulin (~65%), alpha-lactalbumin (~25%), bovine serum albumin (~8%)(see also serum albumin), and immunoglobulins. These are soluble in their native forms, independent of pH. •β-Lactoglobulin is the major whey protein of cow and sheep's milk (~3 g/l), •α-Lactalbumin is an important whey protein in cow's milk (~1 g/l) that enhances efficiency of brain function, •Serum albumin, often referred to simply as albumin is a globular protein. Serum albumin is the most abundant plasma protein in mammals. •An antibody (Ab), also known as an immunoglobulin (Ig), is a large Y-shaped protein produced by B cells that is used by the immune system to identify and neutralize foreign objects such as bacteria and viruses. • Plant Proteins January 8/2018 NATURAL POLYMERS MU SCI 8 2018 71 •Proteins are usually related with Animal Products, but Proteins can be also of the Plant Origin: •Glutens (glutelins) •Prolamins (gliadins) •They are MOSTLY Water insoluble (approx . 80 % of them) • Plant Group Protein Remark, more Specific Wheat, Barley, Rye Gluten glutenin 8 – 13, sometimes also 15 % w/w Proteins Rice oryzenin Wheat, Rye Prolamin gliadin coeliac disease, allergy to Gluten Corn zein Barley hordein GLYCOPROTEIN, coeliac disease, allergy to Gluten Legumes Pea, Bean, Lentil, Soya, Ground-nut etc., up to 45 % w/w Proteins January 8/2018 NATURAL POLYMERS MU SCI 8 2018 72 Prolamins are a group of plant storage proteins having a high proline content and found in the seeds of cereal grains: wheat (gliadin), barley (hordein), rye (secalin), corn (zein), sorghum (kafirin) and as a minor protein, avenin in oats. They are characterised by a high glutamine and proline content and are generally soluble only in strong alcohol solutions. Some prolamins, notably gliadin, and similar proteins found in the tribe Triticeae (see Triticeae glutens) may induce coeliac disease in genetically predisposed individuals. Gluten is a composite of storage proteins termed prolamins and glutelins and stored together with starch in the endosperm (which nourishes the embryonic plant during germination) of various cereal (grass) grains. It is found in wheat, barley, rye, oat, related species and hybrids (such as spelt, khorasan, emmer, einkorn, triticale, kamut, etc.) and products of these (such as malt). Glutens, and most especially the Triticeae glutens, are appreciated for their viscoelastic properties. It gives elasticity to dough, helping it rise and keep its shape and often gives the final product a chewy texture. Gliadin (a type of prolamin) is a class of proteins present in wheat and several other cereals within the grass genus Triticum. Gliadins, which are a component of gluten, are essential for giving bread the ability to rise properly during baking. Gliadins and glutenins are the two main components of the gluten fraction of the wheat seed. This gluten is found in products such as wheat flour. Gluten is split about evenly between the gliadins and glutenins, although there are variations found in different sources. Gliadin is the water-soluble component of gluten, while glutenin is insoluble. There are three main types of gliadin (α, γ, and ω), to which the body is intolerant in coeliac (or celiac) disease. Diagnosis of this disease has recently been improving