| rector | prof. MUDr. Martin Bareš, Ph.D. |
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| vice-rector for research and doctoral studies | prof. RNDr. Šárka Pospíšilová, Ph.D. |
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| vice-rector for studies and quality | Mgr. Michal Bulant, Ph.D. |
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| vice-rector for internationalisation | doc. PhDr. Břetislav Dančák, Ph.D. |
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| Vice-rector for Student and Alumni Affairs | doc. PhDr. Mgr. Hana Svatoňová, Ph.D. |
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| vice-rector for personnel and academic affairs | prof. PhDr. Jiří Hanuš, Ph.D. |
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| vice-rector for development | doc. Ing. Vladimír Žítek, Ph.D. |
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| vice-rector for legal and policy affairs, information technologies and corporate relations | doc. JUDr. Radim Polčák, Ph.D. |
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| bursar | Mgr. Marta Valešová, MBA |
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| executive assistant to the rector | Marián Kišš, M.A., Ph.D. |
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| Chair of MUNI Academic Senate | Mgr. Josef Menšík, Ph.D. |
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