PřF:Bi5000c Bioinformatics - practice

Bi5000c Bioinformatics - practice

Faculty of Science
Autumn 2024

Extent and Intensity

0/2/0. 2 credit(s) (plus extra credits for completion). Type of Completion: z (credit).
In-person direct teaching

Teacher(s)

Guaranteed by

prof. Mgr. Jiří Damborský, Dr.
Department of Experimental Biology – Biology Section – Faculty of Science
Contact Person: prof. Mgr. Jiří Damborský, Dr.
Supplier department: Department of Experimental Biology – Biology Section – Faculty of Science

Timetable of Seminar Groups

Bi5000c/01: Wed 13:00–14:50 B09/316, J. Damborský, I. Mašlaňová, R. Pantůček
Bi5000c/02: Wed 10:00–11:50 B09/316, J. Damborský, I. Mašlaňová, R. Pantůček
Bi5000c/03: Wed 15:00–16:50 B09/316, J. Damborský, I. Mašlaňová, R. Pantůček

Prerequisites (in Czech)

Bi5000 Bioinformatics || NOW( Bi5000 Bioinformatics ) && ! Bi9061 Bioinformatics - practice

Course Enrolment Limitations

The course is also offered to the students of the fields other than those the course is directly associated with.
The capacity limit for the course is 75 student(s).
Current registration and enrolment status: enrolled: 61/75, only registered: 0/75, only registered with preference (fields directly associated with the programme): 0/75

fields of study / plans the course is directly associated with

there are 12 fields of study the course is directly associated with, display

Course objectives

Students will gain practical understanding of several bioinformatic databases and tools commonly used in biological and biochemical research. The main objective of this course is to providee students with hands-on experience with various bioinformatic databases and software tools. The practicals follow the theory presented during the lectures of Bioinformatics I - nucleic acids and Bioinformatics II- proteins. We will cover various topics from sequence to structural bioinformatics. The students are expected to learn, how to set up bioinformatic analysis and how to properly interpret the results of their analysis.

Learning outcomes

The outcomes of the Bioinformatics practise is new knowledge and experience of the students with bioinformatic databases and tools. The students with have necessary know how and skill to carry out sequence and structural bioinformatic analyses independently. They will be able to select proper data sources and the tools for various tasks related to biological and biochemical experiments.

Syllabus

1. Bioinformatic databases
2. Manipulation with sequence data
3. Primer design and restriction analysis
4. Pairwise sequence alignment
5. Multiple sequence alignment
6. Gene prediction
7. Protein sequence analysis
8. Preparation of nucleotide sequence for database submission
9. Structure databases
10. Prediction of protein structure

Literature

recommended literature

CLAVERIE, Jean-Michel and Cedric NOTREDAME. Bioinformatics for dummies. 2nd ed. Hoboken, N.J.: Wiley, 2007, xviii, 436. ISBN 9780470089859. info

not specified

XIONG, Jin. Essential bioinformatics. 1st pub. Cambridge: Cambridge University Press, 2006, xi, 339. ISBN 0521600820. info
ATTWOOD, Teresa K. and David J. PARRY-SMITH. Introduction to bioinformatics. 1st pub. Essex: Longman, 1999, xx, 218. ISBN 0582327881. info

Teaching methods

practice in computer lab

Assessment methods

Written test - practical tasks

Language of instruction

Czech

Further Comments

Study Materials
The course can also be completed outside the examination period.
The course is taught annually.

Teacher's information

http://loschmidt.chemi.muni.cz/bioinf

The course is also listed under the following terms Autumn 2019, Autumn 2020, autumn 2021, Autumn 2022, Autumn 2023.

Enrolment Statistics (recent)
Permalink: https://is.muni.cz/course/sci/autumn2024/Bi5000c

PřF:Bi5000c Bioinformatics - practice - Course Information

Bi5000c Bioinformatics - practice

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