PřF:C3211 Aplikovaná bioinformatika - Course Information
C3211 Aplikovaná bioinformatikaFaculty of Science
- Extent and Intensity
- 0/4. 3 credit(s). Type of Completion: k (colloquium).
- prof. RNDr. Michaela Wimmerová, Ph.D. (lecturer)
Mgr. Josef Houser, Ph.D. (seminar tutor)
Mgr. Lenka Malinovská, Ph.D. (seminar tutor)
- Guaranteed by
- prof. RNDr. Michaela Wimmerová, Ph.D.
National Centre for Biomolecular Research - Faculty of Science
Supplier department: National Centre for Biomolecular Research - Faculty of Science
- Wed 12:00–15:50 A4-118
- Basic knowledge of biomacromolecules
- Course Enrolment Limitations
- The course is offered to students of any study field.
The capacity limit for the course is 15 student(s).
Current registration and enrolment status: enrolled: 0/15, only registered: 0/15, only registered with preference (fields directly associated with the programme): 0/15
- Course objectives
- At the end of the course students should be able to utilize bioinformatic tools for solving biological problems and for optimization of experimental laboratory research.
- Basic protein properties: theoretical background (proteinogenic amino acids, non-standard proteinogenic amino acids, isoelectric point, extinction coefficient, stability and storage of proteins, localization in cell), prediction of basic protein properties, initial methionine and its cleavage, signal sequence, information in databases, sequence alignment.
- Recombinant proteins production: theoretical background (vectors, host organisms, ligation, transformation, expression, problems, disulfide bonds, posttranslational modifications, rare codons, production of toxic proteins), prediction of posttranslational modifications and disulfide bonds, prediction of glycosylation, design of synthetic genes.
- Secondary structure and function of proteins: theoretical background (secondary structure and protein folding, CD spectroscopy, prediction of protein function, secondary protein databases), secondary structure prediction, CD spectrum prediction, prediction of function by sequence alignment, identification and analysis of active site, mutations in active sites, identification of structural and functional motifs in sequences.
- Protein tertiary structure and oligomerization: theoretical background (3D structure, structural databases, structure determination, RTG, NMR, theory of structure prediction, importance of oligomerization, determination of oligomerization), 3D structure visualization, types of depiction, homology proteins alignment, active site analysis, prediction tools, model validation, prediction of oligomerization, repetition analysis.
- Teaching methods
- Lectures, practical exercises in silico, educational laboratory excursions.
- Assessment methods
- Final test, oral exam.
- Language of instruction