C5855 Methods in Biophysical Chemistry
Faculty of ScienceAutumn 2024
- Extent and Intensity
- 2/0/0. 2 credit(s) (plus extra credits for completion). Type of Completion: zk (examination).
Taught online. - Teacher(s)
- doc. Mgr. Zdeněk Farka, Ph.D. (lecturer)
doc. RNDr. Mgr. Jozef Hritz, Ph.D. (lecturer)
RNDr. Mgr. Iveta Třísková, Ph.D. (lecturer) - Guaranteed by
- doc. RNDr. Mgr. Jozef Hritz, Ph.D.
Department of Chemistry – Chemistry Section – Faculty of Science
Supplier department: Department of Chemistry – Chemistry Section – Faculty of Science - Prerequisites
- exam of C5850 Introduction to Biophysical Chemistry
simultaneous attendance of C5855 Methods in Biophysical Chemistry is recommended - Course Enrolment Limitations
- The course is also offered to the students of the fields other than those the course is directly associated with.
- fields of study / plans the course is directly associated with
- Biophysical Chemistry (programme PřF, B-CH)
- Physical Chemistry (programme PřF, N-CH)
- Course objectives
- Students of this course will gain physicochemical foundations of biophysical methods used in genomics, proteomics, biotechnology and bionanotechnology.
- Learning outcomes
- Students will learn in detail with modern approaches in biophysically-chemical research, very useful in biophysics, biochemistry, medicine, pharmacy and food industry. At the end of this course the student will be able:
a) to explain the principles of biophysical methods,
b) to use the fundamentals of physical chemistry in biological practice,
c) to use the knowledge gained for the preparation of the bachelor thesis,
d) to use the knowledge gained in theory (structure calculation) and experience (experiment to verify the theoretical calculations),
e) to interpret new trends, tactics and strategies of biophysical chemistry. - Syllabus
- 1. Experiment of biophysical chemistry (tactics and strategy of choice, general procedure for solving structures and interactions of biomolecules)
- 2. Transport in biological system (diffusion, osmosis, viscosity)
- 3. Techniques of study of biomolecular transport (centrifugation, chromatography, electrophoresis)
- 4. Electrical potential, energy, heat (electrophysiology, mass spectrometry, calorimetry)
- 5. Scattering, refraction and interpretation of their data
- 6. Electron and vibrational spectroscopy I (energy states, UV-Vis, infrared and Raman spectroscopy)
- 7. Electron and vibrational spectroscopy II (fluorescence, FRET, phosphorescence, chiroptic spectra, X-ray spectroscopy)
- 8. Magnetic resonance (nuclear magnetic resonance - NMR and electron paramagnetic resonance - EPR)
- 9. Microscopy (electron microscopy - SEM and TEM, atomic force microscopy - AFM)
- 10. Methods of study of own possibilities (manipulation, electrical and optical properties of biomolecules)
- 11. Electrochemical methods and their use in biosensors (bioelectrochemistry, nanoelectrochemistry)
- 12. Mathematical and statistical data processing (introduction to Fourier methods, multicomponent analysis, artificial neural networks).
- Literature
- required literature
- CAMPBELL, Iain D. Biophysical techniques. Oxford: Oxford University Press. ix, 353. ISBN 9780199642144. 2012. info
- KODÍČEK, Milan and Vladimír KARPENKO. Biofysikální chemie. Vyd. 3., opr. a rozš. Praha: Academia. 423 s. ISBN 9788020022417. 2013. info
- recommended literature
- ALLEN, James P. Biophysical chemistry. Oxford: Wiley-Blackwell Pub. xvi, 492. ISBN 9781405124362. 2008. info
- CANTOR, Charles R. and Paul R. SCHIMMEL. Biophysical chemistry. Part II, Techniques for the study of biological structure and function. 12th print. New York: W.H. Freeman and Company. xxix, s. 3. ISBN 0-7167-1189-3. 2001. info
- CANTOR, Charles R. and Paul R. SCHIMMEL. Biophysical chemistry. Part III, The behavior of biological macromolecules. New York: W.H. Freeman and Company. xxix, s. 8. ISBN 0-7167-1191-5. 1980. info
- CANTOR, Charles R. and Paul R. SCHIMMEL. Biophysical chemistry. Part I, The conformation of biological macromolecules. 11th print. New York: W.H. Freeman and Company. xxii, 341. ISBN 0-7167-1042-0. 1999. info
- Teaching methods
- lectures, ppt presentations, discussions
- Assessment methods
- written test and oral exam
- Language of instruction
- Czech
- Further Comments
- The course can also be completed outside the examination period.
The course is taught annually.
The course is taught: every week.
C5855 Methods in Biophysical Chemistry
Faculty of ScienceAutumn 2023
- Extent and Intensity
- 2/0/0. 2 credit(s) (plus extra credits for completion). Type of Completion: zk (examination).
Taught online. - Teacher(s)
- doc. Mgr. Zdeněk Farka, Ph.D. (lecturer)
doc. RNDr. Mgr. Jozef Hritz, Ph.D. (lecturer)
RNDr. Mgr. Iveta Třísková, Ph.D. (lecturer) - Guaranteed by
- doc. RNDr. Mgr. Jozef Hritz, Ph.D.
Department of Chemistry – Chemistry Section – Faculty of Science
Supplier department: Department of Chemistry – Chemistry Section – Faculty of Science - Timetable
- Mon 13:00–14:50 C12/311
- Prerequisites
- exam of C5850 Introduction to Biophysical Chemistry
simultaneous attendance of C5855 Methods in Biophysical Chemistry is recommended - Course Enrolment Limitations
- The course is also offered to the students of the fields other than those the course is directly associated with.
- fields of study / plans the course is directly associated with
- Biophysical Chemistry (programme PřF, B-CH)
- Physical Chemistry (programme PřF, N-CH)
- Course objectives
- Students of this course will gain physicochemical foundations of biophysical methods used in genomics, proteomics, biotechnology and bionanotechnology.
- Learning outcomes
- Students will learn in detail with modern approaches in biophysically-chemical research, very useful in biophysics, biochemistry, medicine, pharmacy and food industry. At the end of this course the student will be able:
a) to explain the principles of biophysical methods,
b) to use the fundamentals of physical chemistry in biological practice,
c) to use the knowledge gained for the preparation of the bachelor thesis,
d) to use the knowledge gained in theory (structure calculation) and experience (experiment to verify the theoretical calculations),
e) to interpret new trends, tactics and strategies of biophysical chemistry. - Syllabus
- 1. Experiment of biophysical chemistry (tactics and strategy of choice, general procedure for solving structures and interactions of biomolecules)
- 2. Transport in biological system (diffusion, osmosis, viscosity)
- 3. Techniques of study of biomolecular transport (centrifugation, chromatography, electrophoresis)
- 4. Electrical potential, energy, heat (electrophysiology, mass spectrometry, calorimetry)
- 5. Scattering, refraction and interpretation of their data
- 6. Electron and vibrational spectroscopy I (energy states, UV-Vis, infrared and Raman spectroscopy)
- 7. Electron and vibrational spectroscopy II (fluorescence, FRET, phosphorescence, chiroptic spectra, X-ray spectroscopy)
- 8. Magnetic resonance (nuclear magnetic resonance - NMR and electron paramagnetic resonance - EPR)
- 9. Microscopy (electron microscopy - SEM and TEM, atomic force microscopy - AFM)
- 10. Methods of study of own possibilities (manipulation, electrical and optical properties of biomolecules)
- 11. Electrochemical methods and their use in biosensors (bioelectrochemistry, nanoelectrochemistry)
- 12. Mathematical and statistical data processing (introduction to Fourier methods, multicomponent analysis, artificial neural networks).
- Literature
- required literature
- CAMPBELL, Iain D. Biophysical techniques. Oxford: Oxford University Press. ix, 353. ISBN 9780199642144. 2012. info
- KODÍČEK, Milan and Vladimír KARPENKO. Biofysikální chemie. Vyd. 3., opr. a rozš. Praha: Academia. 423 s. ISBN 9788020022417. 2013. info
- recommended literature
- ALLEN, James P. Biophysical chemistry. Oxford: Wiley-Blackwell Pub. xvi, 492. ISBN 9781405124362. 2008. info
- CANTOR, Charles R. and Paul R. SCHIMMEL. Biophysical chemistry. Part II, Techniques for the study of biological structure and function. 12th print. New York: W.H. Freeman and Company. xxix, s. 3. ISBN 0-7167-1189-3. 2001. info
- CANTOR, Charles R. and Paul R. SCHIMMEL. Biophysical chemistry. Part III, The behavior of biological macromolecules. New York: W.H. Freeman and Company. xxix, s. 8. ISBN 0-7167-1191-5. 1980. info
- CANTOR, Charles R. and Paul R. SCHIMMEL. Biophysical chemistry. Part I, The conformation of biological macromolecules. 11th print. New York: W.H. Freeman and Company. xxii, 341. ISBN 0-7167-1042-0. 1999. info
- Teaching methods
- lectures, ppt presentations, discussions
- Assessment methods
- written test and oral exam
- Language of instruction
- Czech
- Further Comments
- Study Materials
The course can also be completed outside the examination period.
The course is taught annually.
C5855 Methods in Biophysical Chemistry
Faculty of ScienceAutumn 2022
- Extent and Intensity
- 2/0/0. 2 credit(s) (plus extra credits for completion). Type of Completion: zk (examination).
Taught online. - Teacher(s)
- prof. RNDr. Libuše Trnková, CSc. (lecturer)
doc. RNDr. Mgr. Jozef Hritz, Ph.D. (lecturer)
RNDr. Mgr. Iveta Třísková, Ph.D. (lecturer)
doc. Mgr. Zdeněk Farka, Ph.D. (lecturer) - Guaranteed by
- prof. RNDr. Libuše Trnková, CSc.
- Prerequisites
- exam of C5850 Introduction to Biophysical Chemistry
simultaneous attendance of C5855 Methods in Biophysical Chemistry is recommended - Course Enrolment Limitations
- The course is also offered to the students of the fields other than those the course is directly associated with.
- fields of study / plans the course is directly associated with
- Biophysical Chemistry (programme PřF, B-CH)
- Physical Chemistry (programme PřF, N-CH)
- Course objectives
- Students of this course will gain physicochemical foundations of biophysical methods used in genomics, proteomics, biotechnology and bionanotechnology.
- Learning outcomes
- Students will learn in detail with modern approaches in biophysically-chemical research, very useful in biophysics, biochemistry, medicine, pharmacy and food industry. At the end of this course the student will be able:
a) to explain the principles of biophysical methods,
b) to use the fundamentals of physical chemistry in biological practice,
c) to use the knowledge gained for the preparation of the bachelor thesis,
d) to use the knowledge gained in theory (structure calculation) and experience (experiment to verify the theoretical calculations),
e) to interpret new trends, tactics and strategies of biophysical chemistry. - Syllabus
- 1. Experiment of biophysical chemistry (tactics and strategy of choice, general procedure for solving structures and interactions of biomolecules)
- 2. Transport in biological system (diffusion, osmosis, viscosity)
- 3. Techniques of study of biomolecular transport (centrifugation, chromatography, electrophoresis)
- 4. Electrical potential, energy, heat (electrophysiology, mass spectrometry, calorimetry)
- 5. Scattering, refraction and interpretation of their data
- 6. Electron and vibrational spectroscopy I (energy states, UV-Vis, infrared and Raman spectroscopy)
- 7. Electron and vibrational spectroscopy II (fluorescence, FRET, phosphorescence, chiroptic spectra, X-ray spectroscopy)
- 8. Magnetic resonance (nuclear magnetic resonance - NMR and electron paramagnetic resonance - EPR)
- 9. Microscopy (electron microscopy - SEM and TEM, atomic force microscopy - AFM)
- 10. Methods of study of own possibilities (manipulation, electrical and optical properties of biomolecules)
- 11. Electrochemical methods and their use in biosensors (bioelectrochemistry, nanoelectrochemistry)
- 12. Mathematical and statistical data processing (introduction to Fourier methods, multicomponent analysis, artificial neural networks).
- Literature
- required literature
- CAMPBELL, Iain D. Biophysical techniques. Oxford: Oxford University Press. ix, 353. ISBN 9780199642144. 2012. info
- KODÍČEK, Milan and Vladimír KARPENKO. Biofysikální chemie. Vyd. 3., opr. a rozš. Praha: Academia. 423 s. ISBN 9788020022417. 2013. info
- recommended literature
- ALLEN, James P. Biophysical chemistry. Oxford: Wiley-Blackwell Pub. xvi, 492. ISBN 9781405124362. 2008. info
- CANTOR, Charles R. and Paul R. SCHIMMEL. Biophysical chemistry. Part II, Techniques for the study of biological structure and function. 12th print. New York: W.H. Freeman and Company. xxix, s. 3. ISBN 0-7167-1189-3. 2001. info
- CANTOR, Charles R. and Paul R. SCHIMMEL. Biophysical chemistry. Part III, The behavior of biological macromolecules. New York: W.H. Freeman and Company. xxix, s. 8. ISBN 0-7167-1191-5. 1980. info
- CANTOR, Charles R. and Paul R. SCHIMMEL. Biophysical chemistry. Part I, The conformation of biological macromolecules. 11th print. New York: W.H. Freeman and Company. xxii, 341. ISBN 0-7167-1042-0. 1999. info
- Teaching methods
- lectures, ppt presentations, discussions
- Assessment methods
- written test and oral exam
- Language of instruction
- Czech
- Further Comments
- The course can also be completed outside the examination period.
The course is taught annually.
The course is taught: every week.
C5855 Methods in Biophysical Chemistry
Faculty of Scienceautumn 2021
- Extent and Intensity
- 2/0/0. 2 credit(s) (plus extra credits for completion). Type of Completion: zk (examination).
Taught online. - Teacher(s)
- prof. RNDr. Libuše Trnková, CSc. (lecturer)
doc. RNDr. Mgr. Jozef Hritz, Ph.D. (lecturer)
RNDr. Mgr. Iveta Třísková, Ph.D. (lecturer)
doc. Mgr. Zdeněk Farka, Ph.D. (lecturer) - Guaranteed by
- prof. RNDr. Libuše Trnková, CSc.
- Timetable
- Mon 10:00–11:50 C12/311
- Prerequisites
- exam of C5850 Introduction to Biophysical Chemistry
simultaneous attendance of C5855 Methods in Biophysical Chemistry is recommended - Course Enrolment Limitations
- The course is also offered to the students of the fields other than those the course is directly associated with.
- fields of study / plans the course is directly associated with
- Biophysical Chemistry (programme PřF, B-CH)
- Physical Chemistry (programme PřF, N-CH)
- Course objectives
- Students of this course will gain physicochemical foundations of biophysical methods used in genomics, proteomics, biotechnology and bionanotechnology.
- Learning outcomes
- Students will learn in detail with modern approaches in biophysically-chemical research, very useful in biophysics, biochemistry, medicine, pharmacy and food industry. At the end of this course the student will be able:
a) to explain the principles of biophysical methods,
b) to use the fundamentals of physical chemistry in biological practice,
c) to use the knowledge gained for the preparation of the bachelor thesis,
d) to use the knowledge gained in theory (structure calculation) and experience (experiment to verify the theoretical calculations),
e) to interpret new trends, tactics and strategies of biophysical chemistry. - Syllabus
- 1. Experiment of biophysical chemistry (tactics and strategy of choice, general procedure for solving structures and interactions of biomolecules)
- 2. Transport in biological system (diffusion, osmosis, viscosity)
- 3. Techniques of study of biomolecular transport (centrifugation, chromatography, electrophoresis)
- 4. Electrical potential, energy, heat (electrophysiology, mass spectrometry, calorimetry)
- 5. Scattering, refraction and interpretation of their data
- 6. Electron and vibrational spectroscopy I (energy states, UV-Vis, infrared and Raman spectroscopy)
- 7. Electron and vibrational spectroscopy II (fluorescence, FRET, phosphorescence, chiroptic spectra, X-ray spectroscopy)
- 8. Magnetic resonance (nuclear magnetic resonance - NMR and electron paramagnetic resonance - EPR)
- 9. Microscopy (electron microscopy - SEM and TEM, atomic force microscopy - AFM)
- 10. Methods of study of own possibilities (manipulation, electrical and optical properties of biomolecules)
- 11. Electrochemical methods and their use in biosensors (bioelectrochemistry, nanoelectrochemistry)
- 12. Mathematical and statistical data processing (introduction to Fourier methods, multicomponent analysis, artificial neural networks).
- Literature
- required literature
- CAMPBELL, Iain D. Biophysical techniques. Oxford: Oxford University Press. ix, 353. ISBN 9780199642144. 2012. info
- KODÍČEK, Milan and Vladimír KARPENKO. Biofysikální chemie. Vyd. 3., opr. a rozš. Praha: Academia. 423 s. ISBN 9788020022417. 2013. info
- recommended literature
- ALLEN, James P. Biophysical chemistry. Oxford: Wiley-Blackwell Pub. xvi, 492. ISBN 9781405124362. 2008. info
- CANTOR, Charles R. and Paul R. SCHIMMEL. Biophysical chemistry. Part II, Techniques for the study of biological structure and function. 12th print. New York: W.H. Freeman and Company. xxix, s. 3. ISBN 0-7167-1189-3. 2001. info
- CANTOR, Charles R. and Paul R. SCHIMMEL. Biophysical chemistry. Part III, The behavior of biological macromolecules. New York: W.H. Freeman and Company. xxix, s. 8. ISBN 0-7167-1191-5. 1980. info
- CANTOR, Charles R. and Paul R. SCHIMMEL. Biophysical chemistry. Part I, The conformation of biological macromolecules. 11th print. New York: W.H. Freeman and Company. xxii, 341. ISBN 0-7167-1042-0. 1999. info
- Teaching methods
- lectures, ppt presentations, discussions
- Assessment methods
- written test and oral exam
- Language of instruction
- Czech
- Further Comments
- Study Materials
The course can also be completed outside the examination period.
The course is taught annually.
C5855 Methods in Biophysical Chemistry
Faculty of ScienceAutumn 2020
- Extent and Intensity
- 2/0/0. 2 credit(s) (plus extra credits for completion). Type of Completion: zk (examination).
Taught online. - Teacher(s)
- prof. RNDr. Libuše Trnková, CSc. (lecturer)
doc. RNDr. Mgr. Jozef Hritz, Ph.D. (lecturer)
RNDr. Mgr. Iveta Třísková, Ph.D. (lecturer)
doc. Mgr. Zdeněk Farka, Ph.D. (lecturer) - Guaranteed by
- prof. RNDr. Libuše Trnková, CSc.
- Timetable
- Wed 8:00–9:50 Kontaktujte učitele
- Prerequisites
- exam of C5850 Introduction to Biophysical Chemistry
simultaneous attendance of C5855 Methods in Biophysical Chemistry is recommended - Course Enrolment Limitations
- The course is also offered to the students of the fields other than those the course is directly associated with.
- fields of study / plans the course is directly associated with
- Biophysical Chemistry (programme PřF, B-CH)
- Physical Chemistry (programme PřF, N-CH)
- Course objectives
- Students of this course will gain physicochemical foundations of biophysical methods used in genomics, proteomics, biotechnology and bionanotechnology.
- Learning outcomes
- Students will learn in detail with modern approaches in biophysically-chemical research, very useful in biophysics, biochemistry, medicine, pharmacy and food industry. At the end of this course the student will be able:
a) to explain the principles of biophysical methods,
b) to use the fundamentals of physical chemistry in biological practice,
c) to use the knowledge gained for the preparation of the bachelor thesis,
d) to use the knowledge gained in theory (structure calculation) and experience (experiment to verify the theoretical calculations),
e) to interpret new trends, tactics and strategies of biophysical chemistry. - Syllabus
- 1. Experiment of biophysical chemistry (tactics and strategy of choice, general procedure for solving structures and interactions of biomolecules)
- 2. Transport in biological system (diffusion, osmosis, viscosity)
- 3. Techniques of study of biomolecular transport (centrifugation, chromatography, electrophoresis)
- 4. Electrical potential, energy, heat (electrophysiology, mass spectrometry, calorimetry)
- 5. Scattering, refraction and interpretation of their data
- 6. Electron and vibrational spectroscopy I (energy states, UV-Vis, infrared and Raman spectroscopy)
- 7. Electron and vibrational spectroscopy II (fluorescence, FRET, phosphorescence, chiroptic spectra, X-ray spectroscopy)
- 8. Magnetic resonance (nuclear magnetic resonance - NMR and electron paramagnetic resonance - EPR)
- 9. Microscopy (electron microscopy - SEM and TEM, atomic force microscopy - AFM)
- 10. Methods of study of own possibilities (manipulation, electrical and optical properties of biomolecules)
- 11. Electrochemical methods and their use in biosensors (bioelectrochemistry, nanoelectrochemistry)
- 12. Mathematical and statistical data processing (introduction to Fourier methods, multicomponent analysis, artificial neural networks).
- Literature
- required literature
- CAMPBELL, Iain D. Biophysical techniques. Oxford: Oxford University Press. ix, 353. ISBN 9780199642144. 2012. info
- KODÍČEK, Milan and Vladimír KARPENKO. Biofysikální chemie. Vyd. 3., opr. a rozš. Praha: Academia. 423 s. ISBN 9788020022417. 2013. info
- recommended literature
- ALLEN, James P. Biophysical chemistry. Oxford: Wiley-Blackwell Pub. xvi, 492. ISBN 9781405124362. 2008. info
- CANTOR, Charles R. and Paul R. SCHIMMEL. Biophysical chemistry. Part II, Techniques for the study of biological structure and function. 12th print. New York: W.H. Freeman and Company. xxix, s. 3. ISBN 0-7167-1189-3. 2001. info
- CANTOR, Charles R. and Paul R. SCHIMMEL. Biophysical chemistry. Part III, The behavior of biological macromolecules. New York: W.H. Freeman and Company. xxix, s. 8. ISBN 0-7167-1191-5. 1980. info
- CANTOR, Charles R. and Paul R. SCHIMMEL. Biophysical chemistry. Part I, The conformation of biological macromolecules. 11th print. New York: W.H. Freeman and Company. xxii, 341. ISBN 0-7167-1042-0. 1999. info
- Teaching methods
- lectures, ppt presentations, discussions
- Assessment methods
- written test and oral exam
- Language of instruction
- Czech
- Further Comments
- Study Materials
The course can also be completed outside the examination period.
The course is taught annually.
C5855 Methods in Biophysical Chemistry
Faculty of ScienceAutumn 2019
- Extent and Intensity
- 2/0/0. 2 credit(s) (plus extra credits for completion). Type of Completion: zk (examination).
- Teacher(s)
- prof. RNDr. Libuše Trnková, CSc. (lecturer)
doc. RNDr. Mgr. Jozef Hritz, Ph.D. (lecturer)
RNDr. Mgr. Iveta Třísková, Ph.D. (lecturer)
doc. Mgr. Zdeněk Farka, Ph.D. (lecturer) - Guaranteed by
- prof. RNDr. Libuše Trnková, CSc.
- Timetable
- Tue 8:00–9:50 C12/311
- Prerequisites
- exam of C5850 Introduction to Biophysical Chemistry
simultaneous attendance of C5855 Methods in Biophysical Chemistry is recommended - Course Enrolment Limitations
- The course is also offered to the students of the fields other than those the course is directly associated with.
- fields of study / plans the course is directly associated with
- Biophysical Chemistry (programme PřF, B-CH)
- Physical Chemistry (programme PřF, N-CH)
- Course objectives
- Students of this course will gain physicochemical foundations of biophysical methods used in genomics, proteomics, biotechnology and bionanotechnology.
- Learning outcomes
- Students will learn in detail with modern approaches in biophysically-chemical research, very useful in biophysics, biochemistry, medicine, pharmacy and food industry. At the end of this course the student will be able:
a) to explain the principles of biophysical methods,
b) to use the fundamentals of physical chemistry in biological practice,
c) to use the knowledge gained for the preparation of the bachelor thesis,
d) to use the knowledge gained in theory (structure calculation) and experience (experiment to verify the theoretical calculations),
e) to interpret new trends, tactics and strategies of biophysical chemistry. - Syllabus
- 1. Experiment of biophysical chemistry (tactics and strategy of choice, general procedure for solving structures and interactions of biomolecules)
- 2. Transport in biological system (diffusion, osmosis, viscosity)
- 3. Techniques of study of biomolecular transport (centrifugation, chromatography, electrophoresis)
- 4. Electrical potential, energy, heat (electrophysiology, mass spectrometry, calorimetry)
- 5. Scattering, refraction and interpretation of their data
- 6. Electron and vibrational spectroscopy I (energy states, UV-Vis, infrared and Raman spectroscopy)
- 7. Electron and vibrational spectroscopy II (fluorescence, FRET, phosphorescence, chiroptic spectra, X-ray spectroscopy)
- 8. Magnetic resonance (nuclear magnetic resonance - NMR and electron paramagnetic resonance - EPR)
- 9. Microscopy (electron microscopy - SEM and TEM, atomic force microscopy - AFM)
- 10. Methods of study of own possibilities (manipulation, electrical and optical properties of biomolecules)
- 11. Electrochemical methods and their use in biosensors (bioelectrochemistry, nanoelectrochemistry)
- 12. Mathematical and statistical data processing (introduction to Fourier methods, multicomponent analysis, artificial neural networks).
- Literature
- required literature
- CAMPBELL, Iain D. Biophysical techniques. Oxford: Oxford University Press. ix, 353. ISBN 9780199642144. 2012. info
- KODÍČEK, Milan and Vladimír KARPENKO. Biofysikální chemie. Vyd. 3., opr. a rozš. Praha: Academia. 423 s. ISBN 9788020022417. 2013. info
- recommended literature
- ALLEN, James P. Biophysical chemistry. Oxford: Wiley-Blackwell Pub. xvi, 492. ISBN 9781405124362. 2008. info
- CANTOR, Charles R. and Paul R. SCHIMMEL. Biophysical chemistry. Part II, Techniques for the study of biological structure and function. 12th print. New York: W.H. Freeman and Company. xxix, s. 3. ISBN 0-7167-1189-3. 2001. info
- CANTOR, Charles R. and Paul R. SCHIMMEL. Biophysical chemistry. Part III, The behavior of biological macromolecules. New York: W.H. Freeman and Company. xxix, s. 8. ISBN 0-7167-1191-5. 1980. info
- CANTOR, Charles R. and Paul R. SCHIMMEL. Biophysical chemistry. Part I, The conformation of biological macromolecules. 11th print. New York: W.H. Freeman and Company. xxii, 341. ISBN 0-7167-1042-0. 1999. info
- Teaching methods
- lectures, ppt presentations, discussions
- Assessment methods
- written test and oral exam
- Language of instruction
- Czech
- Further Comments
- Study Materials
The course can also be completed outside the examination period.
The course is taught annually.
C5855 Methods in Biophysical Chemistry
Faculty of ScienceAutumn 2018
- Extent and Intensity
- 2/0/0. 2 credit(s) (plus extra credits for completion). Type of Completion: zk (examination).
- Teacher(s)
- prof. RNDr. Libuše Trnková, CSc. (lecturer)
doc. RNDr. Mgr. Jozef Hritz, Ph.D. (lecturer)
doc. Mgr. Zdeněk Farka, Ph.D. (lecturer)
doc. Mgr. Pavel Plevka, Ph.D. (lecturer)
Mgr. Tomáš Klumpler, Ph.D. (lecturer)
prof. RNDr. Zbyněk Prokop, Ph.D. (lecturer)
Mgr. Veronika Štěpánková, Ph.D. (lecturer)
doc. Mgr. David Bednář, Ph.D. (lecturer)
RNDr. Mgr. Iveta Třísková, Ph.D. (lecturer)
doc. Mgr. Radka Chaloupková, Ph.D. (lecturer)
prof. Dr. Jiří Kozelka, PhD. (lecturer) - Guaranteed by
- prof. RNDr. Libuše Trnková, CSc.
Department of Chemistry – Chemistry Section – Faculty of Science
Supplier department: Department of Chemistry – Chemistry Section – Faculty of Science - Timetable
- Mon 17. 9. to Fri 14. 12. Mon 14:00–15:50 C12/311
- Prerequisites
- exam of C5850 Introduction to Biophysical Chemistry
simultaneous attendance of C5855 Methods in Biophysical Chemistry is recommended - Course Enrolment Limitations
- The course is also offered to the students of the fields other than those the course is directly associated with.
- fields of study / plans the course is directly associated with
- Biophysical Chemistry (programme PřF, B-CH)
- Physical Chemistry (programme PřF, N-CH)
- Course objectives
- Students of this course will gain extensive physicochemical foundations in genomics, proteomics, biotechnology and bionanotechnology. Students will learn in detail with modern approaches in biophysically-chemical research, very useful in biophysics, biochemistry, medicine, pharmacy and food industry. At the end of this course the student will be able: a) to understand the principles of biophysical methods, b) to explain the principles of modern biophysical methods, c) to use the fundamentals of physical chemistry in biological practice d) to use the knowledge gained for the preparation of the thesis, e) to use the knowledge gained in theory (structure calculation) and experience (experiment to verify the theoretical calculations) f) to interpret new trends, tactics and strategies of biophysical chemistry.
- Learning outcomes
- At the end of this course the student will be able: a) to understand the principles of biophysical methods, b) to explain the principles of modern biophysical methods, c) to use the fundamentals of physical chemistry in biological practice d) to use the knowledge gained for the preparation of the thesis, e) to use the knowledge gained in theory (structure calculation) and experience (experiment to verify the theoretical calculations) f) to interpret new trends, tactics and strategies of biophysical chemistry. Na konci tohoto kurzu bude student schopen: a) porozumět principům biofyzikálních metod, b) vysvětlit moderní principy biofyzikálních metod, c) použít základy fyzikální chemie v biologické praxi, d) nabyté vědomosti použít v přípravě bakalářské práce, e) získané vědomosti využít v teorii (výpočty struktur) a v praxi (experiment, který teoretické výpočty ověří), f) interpretovat nové trendy, taktiky a stratégie biofyzikální chemie.
- Syllabus
- 1. The behavior of biological macromolecules (nucleic acids, proteins and polysaccharides)
- 2. Biophysical chemistry cells and membranes (physical chemistry in biology and biophysics of cells and membranes, membrane transport)
- 3. Techniques for studying the structure and function of biopolymers (method's distribution, advantages and disadvantages, applications, general procedure for solving the structure of biopolymers using different techniques)
- 4. Introduction to Fourier methods and statistics (the use of Fourier transforms in intensive experimental methods, the advantage of a mathematical signal processing)
- 5. Biological methods for the analysis of primary, secondary and tertiary structure of biomolecules (chemical sequencing method, PCR)
- 6. Physical methods for the analysis of primary, secondary and tertiary structures of biomolecules (X-ray analysis, electron microscopy, light scattering)
- 7. Spectral methods for analyzing the primary, secondary and tertiary structure of biomolecules (UV-Vis, CD, NMR, MS)
- 8. Electrochemical methods for the analysis of primary, secondary and tertiary structures of biomolecules (electrophoresis, dynamic methods, biosensors)
- 9. Bioinformatics, genomics and proteomics (databases, sequence analysis, genome and metagenome, microarray technology, protein-protein and protein-DNA interactions)
- 10. Experimental methods in molecular Biotechnology I. and II. (isolation, amplification, sequencing, and recombinant DNA, expression and isolation of proteins, methods of structural and functional characterization of proteins)
- 11. Molecular biotechnology in medicine, environmental protection, industry and agriculture (cell and gene therapy, tissue engineering and regenerative medicine, molecular diagnostics, vaccines, biosensors, bioremediation, biofuels, environmental protection and sustainable development, the use of biomass, fermentation technology, biocatalysis in the pharmaceutical and chemical industries, gray and white biotechnology in the food industry, genetic engineering of plants and animals, cloning, GMO foods, biopesticides)
- 12. Computer modeling of the structures of nucleic acids and proteins (structural and functional significance of DNA, RNA, proteins, methods of prediction of biopolymer secondary structures).
- Literature
- required literature
- ALLEN, James P. Biophysical chemistry. Oxford: Wiley-Blackwell Pub. xvi, 492. ISBN 9781405124362. 2008. info
- CANTOR, Charles R. and Paul R. SCHIMMEL. Biophysical chemistry. Part II, Techniques for the study of biological structure and function. 12th print. New York: W.H. Freeman and Company. xxix, s. 3. ISBN 0-7167-1189-3. 2001. info
- CANTOR, Charles R. and Paul R. SCHIMMEL. Biophysical chemistry. Part I, The conformation of biological macromolecules. 11th print. New York: W.H. Freeman and Company. xxii, 341. ISBN 0-7167-1042-0. 1999. info
- CANTOR, Charles R. and Paul R. SCHIMMEL. Biophysical chemistry. Part III, The behavior of biological macromolecules. New York: W.H. Freeman and Company. xxix, s. 8. ISBN 0-7167-1191-5. 1980. info
- recommended literature
- Biophysical chemistry of biointerfaces. Edited by Hiroyuki Ohshima. Hoboken: Wiley. xvi, 547 p. ISBN 9780470169353. 2010. info
- Teaching methods
- lectures, tests, discussions, ppt presentations
- Assessment methods
- written test and oral exam
- Language of instruction
- Czech
- Further Comments
- Study Materials
The course can also be completed outside the examination period.
The course is taught annually.
C5855 Methods in Biophysical Chemistry
Faculty of Scienceautumn 2017
- Extent and Intensity
- 2/0/0. 2 credit(s) (plus extra credits for completion). Type of Completion: zk (examination).
- Teacher(s)
- prof. RNDr. Libuše Trnková, CSc. (lecturer)
doc. RNDr. Mgr. Jozef Hritz, Ph.D. (lecturer)
doc. Mgr. Zdeněk Farka, Ph.D. (lecturer)
doc. Mgr. Pavel Plevka, Ph.D. (lecturer)
Mgr. Tomáš Klumpler, Ph.D. (lecturer)
prof. RNDr. Zbyněk Prokop, Ph.D. (lecturer)
Mgr. Veronika Štěpánková, Ph.D. (lecturer)
doc. Mgr. David Bednář, Ph.D. (lecturer)
RNDr. Mgr. Iveta Třísková, Ph.D. (lecturer)
doc. Mgr. Radka Chaloupková, Ph.D. (lecturer)
prof. Dr. Jiří Kozelka, PhD. (lecturer) - Guaranteed by
- prof. RNDr. Libuše Trnková, CSc.
Department of Chemistry – Chemistry Section – Faculty of Science
Supplier department: Department of Chemistry – Chemistry Section – Faculty of Science - Prerequisites
- exam of C5850 Introduction to Biophysical Chemistry
simultaneous attendance of C5855 Methods in Biophysical Chemistry is recommended - Course Enrolment Limitations
- The course is also offered to the students of the fields other than those the course is directly associated with.
- fields of study / plans the course is directly associated with
- Biophysical Chemistry (programme PřF, B-CH)
- Physical Chemistry (programme PřF, N-CH)
- Course objectives
- Students of this course will gain extensive physicochemical foundations in genomics, proteomics, biotechnology and bionanotechnology. Students will learn in detail with modern approaches in biophysically-chemical research, very useful in biophysics, biochemistry, medicine, pharmacy and food industry. At the end of this course the student will be able: a) to understand the principles of biophysical methods, b) to explain the principles of modern biophysical methods, c) to use the fundamentals of physical chemistry in biological practice d) to use the knowledge gained for the preparation of the thesis, e) to use the knowledge gained in theory (structure calculation) and experience (experiment to verify the theoretical calculations) f) to interpret new trends, tactics and strategies of biophysical chemistry.
- Learning outcomes
- At the end of this course the student will be able: a) to understand the principles of biophysical methods, b) to explain the principles of modern biophysical methods, c) to use the fundamentals of physical chemistry in biological practice d) to use the knowledge gained for the preparation of the thesis, e) to use the knowledge gained in theory (structure calculation) and experience (experiment to verify the theoretical calculations) f) to interpret new trends, tactics and strategies of biophysical chemistry. Na konci tohoto kurzu bude student schopen: a) porozumět principům biofyzikálních metod, b) vysvětlit moderní principy biofyzikálních metod, c) použít základy fyzikální chemie v biologické praxi, d) nabyté vědomosti použít v přípravě bakalářské práce, e) získané vědomosti využít v teorii (výpočty struktur) a v praxi (experiment, který teoretické výpočty ověří), f) interpretovat nové trendy, taktiky a stratégie biofyzikální chemie.
- Syllabus
- 1. The behavior of biological macromolecules (nucleic acids, proteins and polysaccharides)
- 2. Biophysical chemistry cells and membranes (physical chemistry in biology and biophysics of cells and membranes, membrane transport)
- 3. Techniques for studying the structure and function of biopolymers (method's distribution, advantages and disadvantages, applications, general procedure for solving the structure of biopolymers using different techniques)
- 4. Introduction to Fourier methods and statistics (the use of Fourier transforms in intensive experimental methods, the advantage of a mathematical signal processing)
- 5. Biological methods for the analysis of primary, secondary and tertiary structure of biomolecules (chemical sequencing method, PCR)
- 6. Physical methods for the analysis of primary, secondary and tertiary structures of biomolecules (X-ray analysis, electron microscopy, light scattering)
- 7. Spectral methods for analyzing the primary, secondary and tertiary structure of biomolecules (UV-Vis, CD, NMR, MS)
- 8. Electrochemical methods for the analysis of primary, secondary and tertiary structures of biomolecules (electrophoresis, dynamic methods, biosensors)
- 9. Bioinformatics, genomics and proteomics (databases, sequence analysis, genome and metagenome, microarray technology, protein-protein and protein-DNA interactions)
- 10. Experimental methods in molecular Biotechnology I. and II. (isolation, amplification, sequencing, and recombinant DNA, expression and isolation of proteins, methods of structural and functional characterization of proteins)
- 11. Molecular biotechnology in medicine, environmental protection, industry and agriculture (cell and gene therapy, tissue engineering and regenerative medicine, molecular diagnostics, vaccines, biosensors, bioremediation, biofuels, environmental protection and sustainable development, the use of biomass, fermentation technology, biocatalysis in the pharmaceutical and chemical industries, gray and white biotechnology in the food industry, genetic engineering of plants and animals, cloning, GMO foods, biopesticides)
- 12. Computer modeling of the structures of nucleic acids and proteins (structural and functional significance of DNA, RNA, proteins, methods of prediction of biopolymer secondary structures).
- Literature
- required literature
- ALLEN, James P. Biophysical chemistry. Oxford: Wiley-Blackwell Pub. xvi, 492. ISBN 9781405124362. 2008. info
- CANTOR, Charles R. and Paul R. SCHIMMEL. Biophysical chemistry. Part II, Techniques for the study of biological structure and function. 12th print. New York: W.H. Freeman and Company. xxix, s. 3. ISBN 0-7167-1189-3. 2001. info
- CANTOR, Charles R. and Paul R. SCHIMMEL. Biophysical chemistry. Part I, The conformation of biological macromolecules. 11th print. New York: W.H. Freeman and Company. xxii, 341. ISBN 0-7167-1042-0. 1999. info
- CANTOR, Charles R. and Paul R. SCHIMMEL. Biophysical chemistry. Part III, The behavior of biological macromolecules. New York: W.H. Freeman and Company. xxix, s. 8. ISBN 0-7167-1191-5. 1980. info
- recommended literature
- Biophysical chemistry of biointerfaces. Edited by Hiroyuki Ohshima. Hoboken: Wiley. xvi, 547 p. ISBN 9780470169353. 2010. info
- Teaching methods
- lectures, tests, discussions, ppt presentations
- Assessment methods
- written test and oral exam
- Language of instruction
- Czech
- Further Comments
- Study Materials
The course can also be completed outside the examination period.
The course is taught annually.
The course is taught: every week.
C5855 Methods in Biophysical Chemistry
Faculty of ScienceAutumn 2016
- Extent and Intensity
- 2/0/0. 2 credit(s) (plus extra credits for completion). Type of Completion: zk (examination).
- Teacher(s)
- prof. RNDr. Libuše Trnková, CSc. (lecturer)
doc. RNDr. Mgr. Jozef Hritz, Ph.D. (lecturer)
doc. Mgr. Zdeněk Farka, Ph.D. (lecturer)
doc. Mgr. Pavel Plevka, Ph.D. (lecturer)
Mgr. Tomáš Klumpler, Ph.D. (lecturer)
prof. RNDr. Zbyněk Prokop, Ph.D. (lecturer)
Mgr. Veronika Štěpánková, Ph.D. (lecturer)
doc. Mgr. David Bednář, Ph.D. (lecturer)
RNDr. Mgr. Iveta Třísková, Ph.D. (lecturer)
doc. Mgr. Radka Chaloupková, Ph.D. (lecturer)
prof. Dr. Jiří Kozelka, PhD. (lecturer) - Guaranteed by
- prof. RNDr. Libuše Trnková, CSc.
Department of Chemistry – Chemistry Section – Faculty of Science
Supplier department: Department of Chemistry – Chemistry Section – Faculty of Science - Timetable
- Mon 19. 9. to Sun 18. 12. Mon 9:00–10:50 C12/311
- Prerequisites
- exam of C5850 Introduction to Biophysical Chemistry
simultaneous attendance of C5855 Methods in Biophysical Chemistry is recommended - Course Enrolment Limitations
- The course is also offered to the students of the fields other than those the course is directly associated with.
- fields of study / plans the course is directly associated with
- Biophysical Chemistry (programme PřF, B-CH)
- Physical Chemistry (programme PřF, N-CH)
- Course objectives
- Students of this course will gain extensive physicochemical foundations in genomics, proteomics, biotechnology and bionanotechnology. Students will learn in detail with modern approaches in biophysically-chemical research, very useful in biophysics, biochemistry, medicine, pharmacy and food industry. At the end of this course the student will be able: a) to understand the principles of biophysical methods, b) to explain the principles of modern biophysical methods, c) to use the fundamentals of physical chemistry in biological practice d) to use the knowledge gained for the preparation of the thesis, e) to use the knowledge gained in theory (structure calculation) and experience (experiment to verify the theoretical calculations) f) to interpret new trends, tactics and strategies of biophysical chemistry.
- Syllabus
- 1. The behavior of biological macromolecules (nucleic acids, proteins and polysaccharides)
- 2. Biophysical chemistry cells and membranes (physical chemistry in biology and biophysics of cells and membranes, membrane transport)
- 3. Techniques for studying the structure and function of biopolymers (method's distribution, advantages and disadvantages, applications, general procedure for solving the structure of biopolymers using different techniques)
- 4. Introduction to Fourier methods and statistics (the use of Fourier transforms in intensive experimental methods, the advantage of a mathematical signal processing)
- 5. Biological methods for the analysis of primary, secondary and tertiary structure of biomolecules (chemical sequencing method, PCR)
- 6. Physical methods for the analysis of primary, secondary and tertiary structures of biomolecules (X-ray analysis, electron microscopy, light scattering)
- 7. Spectral methods for analyzing the primary, secondary and tertiary structure of biomolecules (UV-Vis, CD, NMR, MS)
- 8. Electrochemical methods for the analysis of primary, secondary and tertiary structures of biomolecules (electrophoresis, dynamic methods, biosensors)
- 9. Bioinformatics, genomics and proteomics (databases, sequence analysis, genome and metagenome, microarray technology, protein-protein and protein-DNA interactions)
- 10. Experimental Methods in Molecular Biotechnology I. and II. (isolation, amplification, sequencing, and recombinant DNA, expression and isolation of proteins, methods of structural and functional characterization of proteins)
- 11. Molecular biotechnology in medicine, environmental protection, industry and agriculture (cell and gene therapy, tissue engineering and regenerative medicine, molecular diagnostics, vaccines, biosensors, bioremediation, biofuels, environmental protection and sustainable development, the use of biomass, fermentation technology, biocatalysis in the pharmaceutical and chemical industries, gray and white biotechnology in the food industry, genetic engineering of plants and animals, cloning, GMO foods, biopesticides)
- 12. Computer modeling of the structures of nucleic acids and proteins (structural and functional significance of DNA, RNA, proteins, methods of prediction of biopolymer secondary structures).
- Literature
- required literature
- ALLEN, James P. Biophysical chemistry. Oxford: Wiley-Blackwell Pub. xvi, 492. ISBN 9781405124362. 2008. info
- CANTOR, Charles R. and Paul R. SCHIMMEL. Biophysical chemistry. Part II, Techniques for the study of biological structure and function. 12th print. New York: W.H. Freeman and Company. xxix, s. 3. ISBN 0-7167-1189-3. 2001. info
- CANTOR, Charles R. and Paul R. SCHIMMEL. Biophysical chemistry. Part I, The conformation of biological macromolecules. 11th print. New York: W.H. Freeman and Company. xxii, 341. ISBN 0-7167-1042-0. 1999. info
- CANTOR, Charles R. and Paul R. SCHIMMEL. Biophysical chemistry. Part III, The behavior of biological macromolecules. New York: W.H. Freeman and Company. xxix, s. 8. ISBN 0-7167-1191-5. 1980. info
- recommended literature
- Biophysical chemistry of biointerfaces. Edited by Hiroyuki Ohshima. Hoboken: Wiley. xvi, 547 p. ISBN 9780470169353. 2010. info
- Teaching methods
- lectures, tests, discussions, ppt presentations
- Assessment methods
- written test and oral exam
- Language of instruction
- Czech
- Further Comments
- Study Materials
The course can also be completed outside the examination period.
The course is taught annually.
C5855 Methods in Biophysical Chemistry
Faculty of ScienceAutumn 2015
- Extent and Intensity
- 2/0/0. 2 credit(s) (plus extra credits for completion). Type of Completion: zk (examination).
- Teacher(s)
- prof. RNDr. Libuše Trnková, CSc. (lecturer)
doc. RNDr. Mgr. Jozef Hritz, Ph.D. (lecturer)
prof. Dr. Jiří Kozelka, PhD. (lecturer)
Mgr. Jan Brezovský, Ph.D. (lecturer)
Mgr. Antonín Hlaváček, Ph.D. (lecturer)
doc. Mgr. Pavel Plevka, Ph.D. (lecturer)
prof. RNDr. Zbyněk Prokop, Ph.D. (lecturer)
Mgr. Šárka Nevolová, Ph.D. (lecturer)
Mgr. Veronika Štěpánková, Ph.D. (lecturer)
doc. Mgr. Zdeněk Farka, Ph.D. (lecturer) - Guaranteed by
- prof. RNDr. Libuše Trnková, CSc.
Department of Chemistry – Chemistry Section – Faculty of Science
Supplier department: Department of Chemistry – Chemistry Section – Faculty of Science - Timetable
- Wed 14:00–15:50 C12/311
- Prerequisites
- exam of C5850 Introduction to Biophysical Chemistry
simultaneous attendance of C5855 Methods in Biophysical Chemistry is recommended - Course Enrolment Limitations
- The course is also offered to the students of the fields other than those the course is directly associated with.
- fields of study / plans the course is directly associated with
- Biophysical Chemistry (programme PřF, B-CH)
- Physical Chemistry (programme PřF, N-CH)
- Course objectives
- Students of this course will gain extensive physicochemical foundations in genomics, proteomics, biotechnology and bionanotechnology. Students will learn in detail with modern approaches in biophysically-chemical research, very useful in biophysics, biochemistry, medicine, pharmacy and food industry. At the end of this course the student will be able: a) to understand the principles of biophysical methods, b) to explain the principles of modern biophysical methods, c) to use the fundamentals of physical chemistry in biological practice d) to use the knowledge gained for the preparation of the thesis, e) to use the knowledge gained in theory (structure calculation) and experience (experiment to verify the theoretical calculations) f) to interpret new trends, tactics and strategies of biophysical chemistry.
- Syllabus
- 1. The behavior of biological macromolecules (nucleic acids, proteins and polysaccharides)
- 2. Biophysical chemistry cells and membranes (physical chemistry in biology and biophysics of cells and membranes, membrane transport)
- 3. Techniques for studying the structure and function of biopolymers (method's distribution, advantages and disadvantages, applications, general procedure for solving the structure of biopolymers using different techniques)
- 4. Introduction to Fourier methods and statistics (the use of Fourier transforms in intensive experimental methods, the advantage of a mathematical signal processing)
- 5. Biological methods for the analysis of primary, secondary and tertiary structure of biomolecules (chemical sequencing method, PCR)
- 6. Physical methods for the analysis of primary, secondary and tertiary structures of biomolecules (X-ray analysis, electron microscopy, light scattering)
- 7. Spectral methods for analyzing the primary, secondary and tertiary structure of biomolecules (UV-Vis, CD, NMR, MS)
- 8. Electrochemical methods for the analysis of primary, secondary and tertiary structures of biomolecules (electrophoresis, dynamic methods, biosensors)
- 9. Bioinformatics, genomics and proteomics (databases, sequence analysis, genome and metagenome, microarray technology, protein-protein and protein-DNA interactions)
- 10. Experimental Methods in Molecular Biotechnology I. and II. (isolation, amplification, sequencing, and recombinant DNA, expression and isolation of proteins, methods of structural and functional characterization of proteins)
- 11. Molecular biotechnology in medicine, environmental protection, industry and agriculture (cell and gene therapy, tissue engineering and regenerative medicine, molecular diagnostics, vaccines, biosensors, bioremediation, biofuels, environmental protection and sustainable development, the use of biomass, fermentation technology, biocatalysis in the pharmaceutical and chemical industries, gray and white biotechnology in the food industry, genetic engineering of plants and animals, cloning, GMO foods, biopesticides)
- 12. Computer modeling of the structures of nucleic acids and proteins (structural and functional significance of DNA, RNA, proteins, methods of prediction of biopolymer secondary structures).
- Literature
- required literature
- ALLEN, James P. Biophysical chemistry. Oxford: Wiley-Blackwell Pub. xvi, 492. ISBN 9781405124362. 2008. info
- CANTOR, Charles R. and Paul R. SCHIMMEL. Biophysical chemistry. Part II, Techniques for the study of biological structure and function. 12th print. New York: W.H. Freeman and Company. xxix, s. 3. ISBN 0-7167-1189-3. 2001. info
- CANTOR, Charles R. and Paul R. SCHIMMEL. Biophysical chemistry. Part I, The conformation of biological macromolecules. 11th print. New York: W.H. Freeman and Company. xxii, 341. ISBN 0-7167-1042-0. 1999. info
- CANTOR, Charles R. and Paul R. SCHIMMEL. Biophysical chemistry. Part III, The behavior of biological macromolecules. New York: W.H. Freeman and Company. xxix, s. 8. ISBN 0-7167-1191-5. 1980. info
- recommended literature
- Biophysical chemistry of biointerfaces. Edited by Hiroyuki Ohshima. Hoboken: Wiley. xvi, 547 p. ISBN 9780470169353. 2010. info
- Teaching methods
- lectures, tests, discussions, ppt presentations
- Assessment methods
- written test and oral exam
- Language of instruction
- Czech
- Further Comments
- Study Materials
The course can also be completed outside the examination period.
The course is taught annually.
C5855 Biophysical Chemistry II
Faculty of ScienceAutumn 2014
- Extent and Intensity
- 2/0/0. 2 credit(s) (plus extra credits for completion). Type of Completion: zk (examination).
- Teacher(s)
- prof. RNDr. Libuše Trnková, CSc. (lecturer)
doc. RNDr. Mgr. Jozef Hritz, Ph.D. (lecturer)
prof. Dr. Jiří Kozelka, PhD. (lecturer)
Mgr. Jan Brezovský, Ph.D. (lecturer)
Mgr. Antonín Hlaváček, Ph.D. (lecturer)
doc. Mgr. Pavel Plevka, Ph.D. (lecturer)
prof. RNDr. Zbyněk Prokop, Ph.D. (lecturer)
Mgr. Šárka Nevolová, Ph.D. (lecturer)
Mgr. Veronika Štěpánková, Ph.D. (lecturer)
doc. Mgr. Zdeněk Farka, Ph.D. (lecturer) - Guaranteed by
- prof. RNDr. Libuše Trnková, CSc.
Department of Chemistry – Chemistry Section – Faculty of Science
Supplier department: Department of Chemistry – Chemistry Section – Faculty of Science - Timetable
- Fri 10:00–11:50 C12/311
- Prerequisites
- fundamentals of physical chemistry
- Course Enrolment Limitations
- The course is also offered to the students of the fields other than those the course is directly associated with.
- fields of study / plans the course is directly associated with
- Biophysical Chemistry (programme PřF, B-CH)
- Physical Chemistry (programme PřF, N-CH)
- Course objectives
- Students of this course will gain extensive physicochemical foundations in genomics, proteomics, biotechnology and bionanotechnology. Students will learn in detail with modern approaches in biophysically-chemical research, very useful in biophysics, biochemistry, medicine, pharmacy and food industry. At the end of this course the student will be able: a) to understand the principles of biophysical methods, b) to explain the principles of modern biophysical methods, c) to use the fundamentals of physical chemistry in biological practice d) to use the knowledge gained for the preparation of the thesis, e) to use the knowledge gained in theory (structure calculation) and experience (experiment to verify the theoretical calculations) f) to interpret new trends, tactics and strategies of biophysical chemistry.
- Syllabus
- 1. The behavior of biological macromolecules (nucleic acids, proteins and polysaccharides) 2. Biophysical chemistry cells and membranes (physical chemistry in biology and biophysics of cells and membranes, membrane transport) 3. Techniques for studying the structure and function of biopolymers (method's distribution, advantages and disadvantages, applications, general procedure for solving the structure of biopolymers using different techniques) 4. Introduction to Fourier methods and statistics (the use of Fourier transforms in intensive experimental methods, the advantage of a mathematical signal processing) 5. Biological methods for the analysis of primary, secondary and tertiary structure of biomolecules (chemical sequencing method, PCR) 6. Physical methods for the analysis of primary, secondary and tertiary structures of biomolecules (X-ray analysis, electron microscopy, light scattering) 7. Spectral methods for analyzing the primary, secondary and tertiary structure of biomolecules (UV-Vis, CD, NMR, MS) 8. Electrochemical methods for the analysis of primary, secondary and tertiary structures of biomolecules (electrophoresis, dynamic methods, biosensors) 9. Bioinformatics, genomics and proteomics (databases, sequence analysis, genome and metagenome, microarray technology, protein-protein and protein-DNA interactions) 10. Experimental Methods in Molecular Biotechnology I. and II. (isolation, amplification, sequencing, and recombinant DNA, expression and isolation of proteins, methods of structural and functional characterization of proteins) 11. Molecular biotechnology in medicine, environmental protection, industry and agriculture (cell and gene therapy, tissue engineering and regenerative medicine, molecular diagnostics, vaccines, biosensors, bioremediation, biofuels, environmental protection and sustainable development, the use of biomass, fermentation technology, biocatalysis in the pharmaceutical and chemical industries, gray and white biotechnology in the food industry, genetic engineering of plants and animals, cloning, GMO foods, biopesticides) 12. Computer modeling of the structures of nucleic acids and proteins (structural and functional significance of DNA, RNA, proteins, methods of prediction of biopolymer secondary structures).
- Literature
- required literature
- ALLEN, James P. Biophysical chemistry. Oxford: Wiley-Blackwell Pub. xvi, 492. ISBN 9781405124362. 2008. info
- CANTOR, Charles R. and Paul R. SCHIMMEL. Biophysical chemistry. Part II, Techniques for the study of biological structure and function. 12th print. New York: W.H. Freeman and Company. xxix, s. 3. ISBN 0-7167-1189-3. 2001. info
- CANTOR, Charles R. and Paul R. SCHIMMEL. Biophysical chemistry. Part I, The conformation of biological macromolecules. 11th print. New York: W.H. Freeman and Company. xxii, 341. ISBN 0-7167-1042-0. 1999. info
- CANTOR, Charles R. and Paul R. SCHIMMEL. Biophysical chemistry. Part III, The behavior of biological macromolecules. New York: W.H. Freeman and Company. xxix, s. 8. ISBN 0-7167-1191-5. 1980. info
- recommended literature
- Biophysical chemistry of biointerfaces. Edited by Hiroyuki Ohshima. Hoboken: Wiley. xvi, 547 p. ISBN 9780470169353. 2010. info
- Teaching methods
- lectures, tests, discussions, ppt presentations
- Assessment methods
- written test and oral exam
- Language of instruction
- Czech
- Further Comments
- Study Materials
The course can also be completed outside the examination period.
The course is taught annually.
C5855 Biophysical Chemistry II
Faculty of ScienceAutumn 2013
- Extent and Intensity
- 2/0/0. 2 credit(s) (plus extra credits for completion). Type of Completion: zk (examination).
- Teacher(s)
- prof. RNDr. Libuše Trnková, CSc. (lecturer)
Mgr. Tomáš Klumpler, Ph.D. (lecturer)
Mgr. Jan Brezovský, Ph.D. (lecturer) - Guaranteed by
- prof. RNDr. Libuše Trnková, CSc.
Department of Chemistry – Chemistry Section – Faculty of Science
Supplier department: Department of Chemistry – Chemistry Section – Faculty of Science - Timetable
- Fri 11:00–12:50 C12/311
- Prerequisites
- exam of C5850
- Course Enrolment Limitations
- The course is also offered to the students of the fields other than those the course is directly associated with.
- fields of study / plans the course is directly associated with
- Biophysical Chemistry (programme PřF, B-CH)
- Physical Chemistry (programme PřF, N-CH)
- Course objectives
- Students of this course will gain extensive physicochemical foundations in genomics, proteomics, biotechnology and bionanotechnology. Students will learn in detail with modern approaches in biophysically-chemical research, very useful in biophysics, biochemistry, medicine, pharmacy and food industry. At the end of this course the student will be able: a) to understand the principles of biophysical methods, b) to explain the principles of modern biophysical methods, c) to use the fundamentals of physical chemistry in biological practice d) to use the knowledge gained for the preparation of the thesis, e) to use the knowledge gained in theory (structure calculation) and experience (experiment to verify the theoretical calculations) f) to interpret new trends, tactics and strategies of biophysical chemistry.
- Syllabus
- 1. The behavior of biological macromolecules (nucleic acids, proteins and polysaccharides) 2. Biophysical chemistry cells and membranes (physical chemistry in biology and biophysics of cells and membranes, membrane transport) 3. Techniques for studying the structure and function of biopolymers (method's distribution, advantages and disadvantages, applications, general procedure for solving the structure of biopolymers using different techniques) 4. Introduction to Fourier methods and statistics (the use of Fourier transforms in intensive experimental methods, the advantage of a mathematical signal processing) 5. Biological methods for the analysis of primary, secondary and tertiary structure of biomolecules (chemical sequencing method, PCR) 6. Physical methods for the analysis of primary, secondary and tertiary structures of biomolecules (X-ray analysis, electron microscopy, light scattering) 7. Spectral methods for analyzing the primary, secondary and tertiary structure of biomolecules (UV-Vis, CD, NMR, MS) 8. Electrochemical methods for the analysis of primary, secondary and tertiary structures of biomolecules (electrophoresis, dynamic methods, biosensors) 9. Bioinformatics, genomics and proteomics (databases, sequence analysis, genome and metagenome, microarray technology, protein-protein and protein-DNA interactions) 10. Experimental Methods in Molecular Biotechnology I. and II. (isolation, amplification, sequencing, and recombinant DNA, expression and isolation of proteins, methods of structural and functional characterization of proteins) 11. Molecular biotechnology in medicine, environmental protection, industry and agriculture (cell and gene therapy, tissue engineering and regenerative medicine, molecular diagnostics, vaccines, biosensors, bioremediation, biofuels, environmental protection and sustainable development, the use of biomass, fermentation technology, biocatalysis in the pharmaceutical and chemical industries, gray and white biotechnology in the food industry, genetic engineering of plants and animals, cloning, GMO foods, biopesticides) 12. Computer modeling of the structures of nucleic acids and proteins (structural and functional significance of DNA, RNA, proteins, methods of prediction of biopolymer secondary structures).
- Literature
- required literature
- ALLEN, James P. Biophysical chemistry. Oxford: Wiley-Blackwell Pub. xvi, 492. ISBN 9781405124362. 2008. info
- CANTOR, Charles R. and Paul R. SCHIMMEL. Biophysical chemistry. Part II, Techniques for the study of biological structure and function. 12th print. New York: W.H. Freeman and Company. xxix, s. 3. ISBN 0-7167-1189-3. 2001. info
- CANTOR, Charles R. and Paul R. SCHIMMEL. Biophysical chemistry. Part I, The conformation of biological macromolecules. 11th print. New York: W.H. Freeman and Company. xxii, 341. ISBN 0-7167-1042-0. 1999. info
- CANTOR, Charles R. and Paul R. SCHIMMEL. Biophysical chemistry. Part III, The behavior of biological macromolecules. New York: W.H. Freeman and Company. xxix, s. 8. ISBN 0-7167-1191-5. 1980. info
- recommended literature
- Biophysical chemistry of biointerfaces. Edited by Hiroyuki Ohshima. Hoboken: Wiley. xvi, 547 p. ISBN 9780470169353. 2010. info
- Teaching methods
- lectures, tests, discussions, ppt presentations
- Assessment methods
- written test and oral exam
- Language of instruction
- Czech
- Further Comments
- Study Materials
The course can also be completed outside the examination period.
The course is taught annually.
C5855 Biophysical Chemistry II
Faculty of ScienceAutumn 2008
- Extent and Intensity
- 2/0/0. 2 credit(s) (fasci plus compl plus > 4). Type of Completion: zk (examination).
- Teacher(s)
- prof. RNDr. Libuše Trnková, CSc. (lecturer)
RNDr. Kamila Neplechová, Ph.D. (assistant) - Guaranteed by
- prof. RNDr. Libuše Trnková, CSc.
Department of Chemistry – Chemistry Section – Faculty of Science - Course Enrolment Limitations
- The course is also offered to the students of the fields other than those the course is directly associated with.
- fields of study / plans the course is directly associated with
- there are 12 fields of study the course is directly associated with, display
- Language of instruction
- Czech
- Further Comments
- The course can also be completed outside the examination period.
The course is taught annually.
The course is taught: every week.
- Enrolment Statistics (Autumn 2024, recent)