IV106 Bioinformatics seminar
Faculty of InformaticsSpring 2025
- Extent and Intensity
- 0/1/0. 1 credit(s) (plus extra credits for completion). Type of Completion: k (colloquium).
- Teacher(s)
- doc. Ing. Matej Lexa, Ph.D. (lecturer)
- Guaranteed by
- doc. Ing. Matej Lexa, Ph.D.
Department of Machine Learning and Data Processing – Faculty of Informatics
Supplier department: Department of Machine Learning and Data Processing – Faculty of Informatics - Prerequisites
- Those who sign up for this interdisciplinary course should be able to listen to lectures and to read and comprehend a scientific paper or book chapter written in English. Deeper knowledge of algorithm design and programming will allow the particular student to focus more on the biological side of the studied problems or vice versa. Students of non-biological fields should be concurrently enrolled in, or have previously passed IV107 Bioinformatics I. Alternatively they may frequent the course with the consent of the teacher.
- Course Enrolment Limitations
- The course is also offered to the students of the fields other than those the course is directly associated with.
- fields of study / plans the course is directly associated with
- Image Processing and Analysis (programme FI, N-VIZ)
- Bioinformatics and systems biology (programme FI, N-UIZD)
- Computer Games Development (programme FI, N-VIZ_A)
- Computer Graphics and Visualisation (programme FI, N-VIZ_A)
- Computer Networks and Communications (programme FI, N-PSKB_A)
- Cybersecurity Management (programme FI, N-RSSS_A)
- Discrete algorithms and models (programme FI, N-TEI)
- Formal analysis of computer systems (programme FI, N-TEI)
- Graphic design (programme FI, N-VIZ)
- Graphic Design (programme FI, N-VIZ_A)
- Hardware Systems (programme FI, N-PSKB_A)
- Hardware systems (programme FI, N-PSKB)
- Image Processing and Analysis (programme FI, N-VIZ_A)
- Information security (programme FI, N-PSKB)
- Informatics (programme FI, B-INF) (2)
- Informatics in education (programme FI, B-IVV) (2)
- Information Security (programme FI, N-PSKB_A)
- Quantum and Other Nonclassical Computational Models (programme FI, N-TEI)
- Computer graphics and visualisation (programme FI, N-VIZ)
- Computer Networks and Communications (programme FI, N-PSKB)
- Principles of programming languages (programme FI, N-TEI)
- Programming and development (programme FI, B-PVA)
- Cybersecurity management (programme FI, N-RSSS)
- Services development management (programme FI, N-RSSS)
- Software Systems Development Management (programme FI, N-RSSS)
- Services Development Management (programme FI, N-RSSS_A)
- Software Systems Development Management (programme FI, N-RSSS_A)
- Software Systems (programme FI, N-PSKB_A)
- Software systems (programme FI, N-PSKB)
- Machine learning and artificial intelligence (programme FI, N-UIZD)
- Teacher of Informatics and IT administrator (programme FI, N-UCI)
- Informatics for secondary school teachers (programme FI, N-UCI) (2)
- Computer Games Development (programme FI, N-VIZ)
- Big data (programme FI, N-UIZD)
- Natural language processing (programme FI, N-UIZD)
- Course objectives
- Long-term the seminar covers "Biological (molecular) and biomedical data analysis". Individual runs may focus on a specific subtopic.
- Learning outcomes
- Students will gain insight into problems studied in bioinformatics; they will practice presentation and discussion techniques in front of an audience.
- Syllabus
- - Introduction to deep learning in bioinformatics - Lectures of invited lecturers covering the same topic - Students will chose a publication from this area to present in class in a 'journal club' format
- Literature
- ZVELEBIL, Marketa J. and Jeremy O. BAUM. Understanding bioinformatics. New York, N.Y.: Garland Science, 2008, xxiii, 772. ISBN 9780815340249. info
- Teaching methods
- invited lectures, student presentations and discussion
- Assessment methods
- Each student will be evaluated based on his presentation of the studied paper. Those absent from presentations will take an oral exam of topics covered during the semester.
- Language of instruction
- English
- Follow-Up Courses
- Further comments (probably available only in Czech)
- The course is taught annually.
The course is taught: every week. - Teacher's information
- http://www.fi.muni.cz/~lexa/
IV106 Bioinformatics seminar
Faculty of InformaticsSpring 2024
- Extent and Intensity
- 0/1/0. 1 credit(s) (plus extra credits for completion). Type of Completion: k (colloquium).
- Teacher(s)
- doc. Ing. Matej Lexa, Ph.D. (lecturer)
- Guaranteed by
- doc. Ing. Matej Lexa, Ph.D.
Department of Machine Learning and Data Processing – Faculty of Informatics
Supplier department: Department of Machine Learning and Data Processing – Faculty of Informatics - Timetable
- Wed 16:00–16:50 A319
- Prerequisites
- Those who sign up for this interdisciplinary course should be able to listen to lectures and to read and comprehend a scientific paper or book chapter written in English. Deeper knowledge of algorithm design and programming will allow the particular student to focus more on the biological side of the studied problems or vice versa. Students of non-biological fields should be concurrently enrolled in, or have previously passed IV107 Bioinformatics I. Alternatively they may frequent the course with the consent of the teacher.
- Course Enrolment Limitations
- The course is also offered to the students of the fields other than those the course is directly associated with.
- fields of study / plans the course is directly associated with
- Image Processing and Analysis (programme FI, N-VIZ)
- Applied Informatics (programme FI, B-AP)
- Applied Informatics (programme FI, N-AP)
- Information Technology Security (eng.) (programme FI, N-IN)
- Information Technology Security (programme FI, N-IN)
- Bioinformatics and systems biology (programme FI, N-UIZD)
- Bioinformatics (programme FI, B-AP)
- Bioinformatics (programme FI, N-AP)
- Computer Games Development (programme FI, N-VIZ_A)
- Computer Graphics and Visualisation (programme FI, N-VIZ_A)
- Computer Networks and Communications (programme FI, N-PSKB_A)
- Cybersecurity Management (programme FI, N-RSSS_A)
- Discrete algorithms and models (programme FI, N-TEI)
- Formal analysis of computer systems (programme FI, N-TEI)
- Graphic design (programme FI, N-VIZ)
- Graphic Design (programme FI, N-VIZ_A)
- Hardware Systems (programme FI, N-PSKB_A)
- Hardware systems (programme FI, N-PSKB)
- Image Processing and Analysis (programme FI, N-VIZ_A)
- Information security (programme FI, N-PSKB)
- Information Systems (programme FI, N-IN)
- Informatics with another discipline (programme FI, B-BI)
- Informatics with another discipline (programme FI, B-EB)
- Informatics with another discipline (programme FI, B-FY)
- Informatics with another discipline (programme FI, B-GE)
- Informatics with another discipline (programme FI, B-GK)
- Informatics with another discipline (programme FI, B-CH)
- Informatics with another discipline (programme FI, B-IO)
- Informatics with another discipline (programme FI, B-MA)
- Informatics with another discipline (programme FI, B-SO)
- Informatics with another discipline (programme FI, B-TV)
- Informatics (programme FI, B-IN)
- Informatics (programme FI, B-INF) (2)
- Informatics (programme FI, M-IN)
- Informatics (programme FI, N-IN)
- Informatics in education (programme FI, B-IVV) (2)
- Information Security (programme FI, N-PSKB_A)
- Quantum and Other Nonclassical Computational Models (programme FI, N-TEI)
- Mathematical Informatics (programme FI, B-IN)
- Parallel and Distributed Systems (programme FI, B-IN)
- Parallel and Distributed Systems (programme FI, N-IN)
- Computer graphics and visualisation (programme FI, N-VIZ)
- Computer Graphics and Image Processing (programme FI, B-IN)
- Computer Graphics (programme FI, N-IN)
- Computer Networks and Communication (programme FI, B-IN)
- Computer Networks and Communication (programme FI, N-IN)
- Computer Networks and Communications (programme FI, N-PSKB)
- Computer Systems and Data Processing (programme FI, B-IN)
- Computer Systems (programme FI, N-IN)
- Principles of programming languages (programme FI, N-TEI)
- Programming and development (programme FI, B-PVA)
- Embedded Systems (eng.) (programme FI, N-IN)
- Programmable Technical Structures (programme FI, B-IN)
- Embedded Systems (programme FI, N-IN)
- Cybersecurity management (programme FI, N-RSSS)
- Services development management (programme FI, N-RSSS)
- Software Systems Development Management (programme FI, N-RSSS)
- Services Development Management (programme FI, N-RSSS_A)
- Service Science, Management and Engineering (eng.) (programme FI, N-AP)
- Service Science, Management and Engineering (programme FI, N-AP)
- Social Informatics (programme FI, B-AP)
- Software Systems Development Management (programme FI, N-RSSS_A)
- Software Systems (programme FI, N-PSKB_A)
- Software systems (programme FI, N-PSKB)
- Machine learning and artificial intelligence (programme FI, N-UIZD)
- Theoretical Informatics (programme FI, N-IN)
- Teacher of Informatics and IT administrator (programme FI, N-UCI)
- Informatics for secondary school teachers (programme FI, N-UCI) (2)
- Upper Secondary School Teacher Training in Informatics (programme FI, M-SS)
- Upper Secondary School Teacher Training in Informatics (programme FI, M-TV)
- Upper Secondary School Teacher Training in Informatics (programme FI, N-SS) (2)
- Artificial Intelligence and Natural Language Processing (programme FI, B-IN)
- Artificial Intelligence and Natural Language Processing (programme FI, N-IN)
- Computer Games Development (programme FI, N-VIZ)
- Big data (programme FI, N-UIZD)
- Image Processing (programme FI, N-AP)
- Natural language processing (programme FI, N-UIZD)
- Course objectives
- Long-term the seminar covers "Biological (molecular) and biomedical data analysis". Individual runs may focus on a specific subtopic.
- Learning outcomes
- Students will gain insight into problems studied in bioinformatics; they will practice presentation and discussion techniques in front of an audience.
- Syllabus
- - Introduction to deep learning in bioinformatics - Lectures of invited lecturers covering the same topic - Students will chose a publication from this area to present in class in a 'journal club' format
- Literature
- ZVELEBIL, Marketa J. and Jeremy O. BAUM. Understanding bioinformatics. New York, N.Y.: Garland Science, 2008, xxiii, 772. ISBN 9780815340249. info
- Teaching methods
- invited lectures, student presentations and discussion
- Assessment methods
- Each student will be evaluated based on his presentation of the studied paper. Those absent from presentations will take an oral exam of topics covered during the semester.
- Language of instruction
- English
- Follow-Up Courses
- Further comments (probably available only in Czech)
- Study Materials
The course is taught annually. - Teacher's information
- http://www.fi.muni.cz/~lexa/
IV106 Bioinformatics seminar
Faculty of InformaticsSpring 2023
- Extent and Intensity
- 0/1/0. 1 credit(s) (plus extra credits for completion). Type of Completion: k (colloquium).
- Teacher(s)
- Mgr. Monika Čechová, Ph.D. (lecturer)
doc. Ing. Matej Lexa, Ph.D. (lecturer) - Guaranteed by
- doc. Ing. Matej Lexa, Ph.D.
Department of Machine Learning and Data Processing – Faculty of Informatics
Supplier department: Department of Machine Learning and Data Processing – Faculty of Informatics - Timetable
- Wed 15. 2. to Wed 10. 5. Wed 16:00–16:50 A319
- Prerequisites
- Those who sign up for this interdisciplinary course should be able to listen to lectures and to read and comprehend a scientific paper or book chapter written in English. Deeper knowledge of algorithm design and programming will allow the particular student to focus more on the biological side of the studied problems or vice versa. Students of non-biological fields should be concurrently enrolled in, or have previously passed IV107 Bioinformatics I. Alternatively they may frequent the course with the consent of the teacher.
- Course Enrolment Limitations
- The course is also offered to the students of the fields other than those the course is directly associated with.
- fields of study / plans the course is directly associated with
- Image Processing and Analysis (programme FI, N-VIZ)
- Applied Informatics (programme FI, B-AP)
- Applied Informatics (programme FI, N-AP)
- Information Technology Security (eng.) (programme FI, N-IN)
- Information Technology Security (programme FI, N-IN)
- Bioinformatics and systems biology (programme FI, N-UIZD)
- Bioinformatics (programme FI, B-AP)
- Bioinformatics (programme FI, N-AP)
- Computer Games Development (programme FI, N-VIZ_A)
- Computer Graphics and Visualisation (programme FI, N-VIZ_A)
- Computer Networks and Communications (programme FI, N-PSKB_A)
- Cybersecurity Management (programme FI, N-RSSS_A)
- Discrete algorithms and models (programme FI, N-TEI)
- Formal analysis of computer systems (programme FI, N-TEI)
- Graphic design (programme FI, N-VIZ)
- Graphic Design (programme FI, N-VIZ_A)
- Hardware Systems (programme FI, N-PSKB_A)
- Hardware systems (programme FI, N-PSKB)
- Image Processing and Analysis (programme FI, N-VIZ_A)
- Information security (programme FI, N-PSKB)
- Information Systems (programme FI, N-IN)
- Informatics with another discipline (programme FI, B-BI)
- Informatics with another discipline (programme FI, B-EB)
- Informatics with another discipline (programme FI, B-FY)
- Informatics with another discipline (programme FI, B-GE)
- Informatics with another discipline (programme FI, B-GK)
- Informatics with another discipline (programme FI, B-CH)
- Informatics with another discipline (programme FI, B-IO)
- Informatics with another discipline (programme FI, B-MA)
- Informatics with another discipline (programme FI, B-SO)
- Informatics with another discipline (programme FI, B-TV)
- Informatics (programme FI, B-IN)
- Informatics (programme FI, B-INF) (2)
- Informatics (programme FI, M-IN)
- Informatics (programme FI, N-IN)
- Informatics in education (programme FI, B-IVV) (2)
- Information Security (programme FI, N-PSKB_A)
- Quantum and Other Nonclassical Computational Models (programme FI, N-TEI)
- Mathematical Informatics (programme FI, B-IN)
- Parallel and Distributed Systems (programme FI, B-IN)
- Parallel and Distributed Systems (programme FI, N-IN)
- Computer graphics and visualisation (programme FI, N-VIZ)
- Computer Graphics and Image Processing (programme FI, B-IN)
- Computer Graphics (programme FI, N-IN)
- Computer Networks and Communication (programme FI, B-IN)
- Computer Networks and Communication (programme FI, N-IN)
- Computer Networks and Communications (programme FI, N-PSKB)
- Computer Systems and Data Processing (programme FI, B-IN)
- Computer Systems (programme FI, N-IN)
- Principles of programming languages (programme FI, N-TEI)
- Programming and development (programme FI, B-PVA)
- Embedded Systems (eng.) (programme FI, N-IN)
- Programmable Technical Structures (programme FI, B-IN)
- Embedded Systems (programme FI, N-IN)
- Cybersecurity management (programme FI, N-RSSS)
- Services development management (programme FI, N-RSSS)
- Software Systems Development Management (programme FI, N-RSSS)
- Services Development Management (programme FI, N-RSSS_A)
- Service Science, Management and Engineering (eng.) (programme FI, N-AP)
- Service Science, Management and Engineering (programme FI, N-AP)
- Social Informatics (programme FI, B-AP)
- Software Systems Development Management (programme FI, N-RSSS_A)
- Software Systems (programme FI, N-PSKB_A)
- Software systems (programme FI, N-PSKB)
- Machine learning and artificial intelligence (programme FI, N-UIZD)
- Theoretical Informatics (programme FI, N-IN)
- Teacher of Informatics and IT administrator (programme FI, N-UCI)
- Informatics for secondary school teachers (programme FI, N-UCI) (2)
- Upper Secondary School Teacher Training in Informatics (programme FI, M-SS)
- Upper Secondary School Teacher Training in Informatics (programme FI, M-TV)
- Upper Secondary School Teacher Training in Informatics (programme FI, N-SS) (2)
- Artificial Intelligence and Natural Language Processing (programme FI, B-IN)
- Artificial Intelligence and Natural Language Processing (programme FI, N-IN)
- Computer Games Development (programme FI, N-VIZ)
- Big data (programme FI, N-UIZD)
- Image Processing (programme FI, N-AP)
- Natural language processing (programme FI, N-UIZD)
- Course objectives
- Long-term the seminar covers "Biological (molecular) and biomedical data analysis". Individual runs may focus on a specific subtopic.
- Learning outcomes
- Students will gain insight into problems studied in bioinformatics; they will practice presentation and discussion techniques in front of an audience.
- Syllabus
- - Introduction to deep learning in bioinformatics - Lectures of invited lecturers covering the same topic - Students will chose a publication from this area to present in class in a 'journal club' format
- Literature
- ZVELEBIL, Marketa J. and Jeremy O. BAUM. Understanding bioinformatics. New York, N.Y.: Garland Science, 2008, xxiii, 772. ISBN 9780815340249. info
- Teaching methods
- invited lectures, student presentations and discussion
- Assessment methods
- Each student will be evaluated based on his presentation of the studied paper. Those absent from presentations will take an oral exam of topics covered during the semester.
- Language of instruction
- English
- Follow-Up Courses
- Further comments (probably available only in Czech)
- Study Materials
The course is taught annually. - Teacher's information
- http://www.fi.muni.cz/~lexa/
IV106 Bioinformatics seminar
Faculty of InformaticsSpring 2022
- Extent and Intensity
- 0/1/0. 1 credit(s) (plus extra credits for completion). Type of Completion: k (colloquium).
- Teacher(s)
- Mgr. Monika Čechová, Ph.D. (lecturer)
doc. Ing. Matej Lexa, Ph.D. (lecturer) - Guaranteed by
- doc. Ing. Matej Lexa, Ph.D.
Department of Machine Learning and Data Processing – Faculty of Informatics
Supplier department: Department of Machine Learning and Data Processing – Faculty of Informatics - Timetable
- Wed 16. 2. to Wed 11. 5. Wed 16:00–16:50 A319
- Prerequisites
- Those who sign up for this interdisciplinary course should be able to listen to lectures and to read and comprehend a scientific paper or book chapter written in English. Deeper knowledge of algorithm design and programming will allow the particular student to focus more on the biological side of the studied problems or vice versa. Students of non-biological fields should be concurrently enrolled in, or have previously passed IV107 Bioinformatics I. Alternatively they may frequent the course with the consent of the teacher.
- Course Enrolment Limitations
- The course is also offered to the students of the fields other than those the course is directly associated with.
- fields of study / plans the course is directly associated with
- Image Processing and Analysis (programme FI, N-VIZ)
- Applied Informatics (programme FI, B-AP)
- Applied Informatics (programme FI, N-AP)
- Information Technology Security (eng.) (programme FI, N-IN)
- Information Technology Security (programme FI, N-IN)
- Bioinformatics and systems biology (programme FI, N-UIZD)
- Bioinformatics (programme FI, B-AP)
- Bioinformatics (programme FI, N-AP)
- Computer Games Development (programme FI, N-VIZ_A)
- Computer Graphics and Visualisation (programme FI, N-VIZ_A)
- Computer Networks and Communications (programme FI, N-PSKB_A)
- Cybersecurity Management (programme FI, N-RSSS_A)
- Formal analysis of computer systems (programme FI, N-TEI)
- Graphic design (programme FI, N-VIZ)
- Graphic Design (programme FI, N-VIZ_A)
- Hardware Systems (programme FI, N-PSKB_A)
- Hardware systems (programme FI, N-PSKB)
- Image Processing and Analysis (programme FI, N-VIZ_A)
- Information security (programme FI, N-PSKB)
- Information Systems (programme FI, N-IN)
- Informatics with another discipline (programme FI, B-BI)
- Informatics with another discipline (programme FI, B-EB)
- Informatics with another discipline (programme FI, B-FY)
- Informatics with another discipline (programme FI, B-GE)
- Informatics with another discipline (programme FI, B-GK)
- Informatics with another discipline (programme FI, B-CH)
- Informatics with another discipline (programme FI, B-IO)
- Informatics with another discipline (programme FI, B-MA)
- Informatics with another discipline (programme FI, B-SO)
- Informatics with another discipline (programme FI, B-TV)
- Informatics (programme FI, B-IN)
- Informatics (programme FI, B-INF) (2)
- Informatics (programme FI, M-IN)
- Informatics (programme FI, N-IN)
- Informatics in education (programme FI, B-IVV) (2)
- Information Security (programme FI, N-PSKB_A)
- Quantum and Other Nonclassical Computational Models (programme FI, N-TEI)
- Mathematical Informatics (programme FI, B-IN)
- Parallel and Distributed Systems (programme FI, B-IN)
- Parallel and Distributed Systems (programme FI, N-IN)
- Computer graphics and visualisation (programme FI, N-VIZ)
- Computer Graphics and Image Processing (programme FI, B-IN)
- Computer Graphics (programme FI, N-IN)
- Computer Networks and Communication (programme FI, B-IN)
- Computer Networks and Communication (programme FI, N-IN)
- Computer Networks and Communications (programme FI, N-PSKB)
- Computer Systems and Data Processing (programme FI, B-IN)
- Computer Systems (programme FI, N-IN)
- Principles of programming languages (programme FI, N-TEI)
- Programming and development (programme FI, B-PVA)
- Embedded Systems (eng.) (programme FI, N-IN)
- Programmable Technical Structures (programme FI, B-IN)
- Embedded Systems (programme FI, N-IN)
- Cybersecurity management (programme FI, N-RSSS)
- Services development management (programme FI, N-RSSS)
- Software Systems Development Management (programme FI, N-RSSS)
- Services Development Management (programme FI, N-RSSS_A)
- Service Science, Management and Engineering (eng.) (programme FI, N-AP)
- Service Science, Management and Engineering (programme FI, N-AP)
- Social Informatics (programme FI, B-AP)
- Software Systems Development Management (programme FI, N-RSSS_A)
- Software Systems (programme FI, N-PSKB_A)
- Software systems (programme FI, N-PSKB)
- Machine learning and artificial intelligence (programme FI, N-UIZD)
- Theoretical Informatics (programme FI, N-IN)
- Teacher of Informatics and IT administrator (programme FI, N-UCI)
- Informatics for secondary school teachers (programme FI, N-UCI) (2)
- Upper Secondary School Teacher Training in Informatics (programme FI, M-SS)
- Upper Secondary School Teacher Training in Informatics (programme FI, M-TV)
- Upper Secondary School Teacher Training in Informatics (programme FI, N-SS) (2)
- Artificial Intelligence and Natural Language Processing (programme FI, B-IN)
- Artificial Intelligence and Natural Language Processing (programme FI, N-IN)
- Computer Games Development (programme FI, N-VIZ)
- Big data (programme FI, N-UIZD)
- Image Processing (programme FI, N-AP)
- Natural language processing (programme FI, N-UIZD)
- Course objectives
- Long-term the seminar covers "Biological (molecular) and biomedical data analysis". Individual runs may focus on a specific subtopic.
- Learning outcomes
- Students will gain insight into problems studied in bioinformatics; they will practice presentation and discussion techniques in front of an audience.
- Syllabus
- - Introduction to deep learning in bioinformatics - Lectures of invited lecturers covering the same topic - Students will chose a publication from this area to present in class in a 'journal club' format
- Literature
- ZVELEBIL, Marketa J. and Jeremy O. BAUM. Understanding bioinformatics. New York, N.Y.: Garland Science, 2008, xxiii, 772. ISBN 9780815340249. info
- Teaching methods
- invited lectures, student presentations and discussion
- Assessment methods
- Each student will be evaluated based on his presentation of the studied paper. Those absent from presentations will take an oral exam of topics covered during the semester.
- Language of instruction
- English
- Follow-Up Courses
- Further comments (probably available only in Czech)
- Study Materials
The course is taught annually. - Teacher's information
- http://www.fi.muni.cz/~lexa/
IV106 Bioinformatics seminar
Faculty of InformaticsSpring 2021
- Extent and Intensity
- 0/1/0. 1 credit(s) (plus extra credits for completion). Type of Completion: k (colloquium).
- Teacher(s)
- doc. Ing. Matej Lexa, Ph.D. (lecturer)
- Guaranteed by
- doc. Ing. Matej Lexa, Ph.D.
Department of Machine Learning and Data Processing – Faculty of Informatics
Supplier department: Department of Machine Learning and Data Processing – Faculty of Informatics - Timetable
- Thu 11:00–11:50 Virtuální místnost
- Prerequisites
- Those who sign up for this interdisciplinary course should be able to read and comprehend a scientific paper or book chapter written in English. Deeper knowledge of algorithm design and programming will allow the particular student to focus more on the biological side of the studied problems or vice versa. Students of non-biological fields should be concurrently enrolled in, or have previously passed IV107 Bioinformatics I. Alternatively they may frequent the course with the consent of the teacher.
- Course Enrolment Limitations
- The course is also offered to the students of the fields other than those the course is directly associated with.
- fields of study / plans the course is directly associated with
- Image Processing and Analysis (programme FI, N-VIZ)
- Applied Informatics (programme FI, B-AP)
- Applied Informatics (programme FI, N-AP)
- Information Technology Security (eng.) (programme FI, N-IN)
- Information Technology Security (programme FI, N-IN)
- Bioinformatics and systems biology (programme FI, N-UIZD)
- Bioinformatics (programme FI, B-AP)
- Bioinformatics (programme FI, N-AP)
- Computer Games Development (programme FI, N-VIZ_A)
- Computer Graphics and Visualisation (programme FI, N-VIZ_A)
- Computer Networks and Communications (programme FI, N-PSKB_A)
- Cybersecurity Management (programme FI, N-RSSS_A)
- Formal analysis of computer systems (programme FI, N-TEI)
- Graphic design (programme FI, N-VIZ)
- Graphic Design (programme FI, N-VIZ_A)
- Hardware Systems (programme FI, N-PSKB_A)
- Hardware systems (programme FI, N-PSKB)
- Image Processing and Analysis (programme FI, N-VIZ_A)
- Information security (programme FI, N-PSKB)
- Information Systems (programme FI, N-IN)
- Informatics with another discipline (programme FI, B-BI)
- Informatics with another discipline (programme FI, B-EB)
- Informatics with another discipline (programme FI, B-FY)
- Informatics with another discipline (programme FI, B-GE)
- Informatics with another discipline (programme FI, B-GK)
- Informatics with another discipline (programme FI, B-CH)
- Informatics with another discipline (programme FI, B-IO)
- Informatics with another discipline (programme FI, B-MA)
- Informatics with another discipline (programme FI, B-SO)
- Informatics with another discipline (programme FI, B-TV)
- Informatics (programme FI, B-IN)
- Informatics (programme FI, B-INF) (2)
- Informatics (programme FI, M-IN)
- Informatics (programme FI, N-IN)
- Informatics in education (programme FI, B-IVV) (2)
- Information Security (programme FI, N-PSKB_A)
- Quantum and Other Nonclassical Computational Models (programme FI, N-TEI)
- Mathematical Informatics (programme FI, B-IN)
- Parallel and Distributed Systems (programme FI, B-IN)
- Parallel and Distributed Systems (programme FI, N-IN)
- Computer graphics and visualisation (programme FI, N-VIZ)
- Computer Graphics and Image Processing (programme FI, B-IN)
- Computer Graphics (programme FI, N-IN)
- Computer Networks and Communication (programme FI, B-IN)
- Computer Networks and Communication (programme FI, N-IN)
- Computer Networks and Communications (programme FI, N-PSKB)
- Computer Systems and Data Processing (programme FI, B-IN)
- Computer Systems (programme FI, N-IN)
- Principles of programming languages (programme FI, N-TEI)
- Programming and development (programme FI, B-PVA)
- Embedded Systems (eng.) (programme FI, N-IN)
- Programmable Technical Structures (programme FI, B-IN)
- Embedded Systems (programme FI, N-IN)
- Cybersecurity management (programme FI, N-RSSS)
- Services development management (programme FI, N-RSSS)
- Software Systems Development Management (programme FI, N-RSSS)
- Services Development Management (programme FI, N-RSSS_A)
- Service Science, Management and Engineering (eng.) (programme FI, N-AP)
- Service Science, Management and Engineering (programme FI, N-AP)
- Social Informatics (programme FI, B-AP)
- Software Systems Development Management (programme FI, N-RSSS_A)
- Software Systems (programme FI, N-PSKB_A)
- Software systems (programme FI, N-PSKB)
- Machine learning and artificial intelligence (programme FI, N-UIZD)
- Theoretical Informatics (programme FI, N-IN)
- Teacher of Informatics and IT administrator (programme FI, N-UCI)
- Informatics for secondary school teachers (programme FI, N-UCI) (2)
- Upper Secondary School Teacher Training in Informatics (programme FI, M-SS)
- Upper Secondary School Teacher Training in Informatics (programme FI, M-TV)
- Upper Secondary School Teacher Training in Informatics (programme FI, N-SS) (2)
- Artificial Intelligence and Natural Language Processing (programme FI, B-IN)
- Artificial Intelligence and Natural Language Processing (programme FI, N-IN)
- Computer Games Development (programme FI, N-VIZ)
- Big data (programme FI, N-UIZD)
- Image Processing (programme FI, N-AP)
- Natural language processing (programme FI, N-UIZD)
- Course objectives
- The Spring Term seminar covers "Biological sequence analysis, protein structure prediction, detection of genes, promoter sequences and other elements".
- Learning outcomes
- Students will gain insight into problems studied in bioinformatics; they will practice presentation and discussion techniques in front of an audience.
- Syllabus
- Students will chose publications to study recent methods in genomic sequence analysis (using suggested journal articles or other material approved by the teacher). Possible subjects of papers:
- Sequencing data processing
- Gene identification in DNA sequences
- Similarity between sequences
- Motif and pattern searching
- DNA and RNA secondary structure prediction
- Literature
- ZVELEBIL, Marketa J. and Jeremy O. BAUM. Understanding bioinformatics. New York, N.Y.: Garland Science, 2008, xxiii, 772. ISBN 9780815340249. info
- Teaching methods
- student presentations and discussion
- Assessment methods
- Each student will be evaluated based on his presentation of the studied paper. Those absent from presentations will take an oral exam of topics covered during the semester.
- Language of instruction
- English
- Follow-Up Courses
- Further comments (probably available only in Czech)
- Study Materials
The course is taught annually. - Teacher's information
- http://www.fi.muni.cz/~lexa/
IV106 Bioinformatics seminar
Faculty of InformaticsSpring 2020
- Extent and Intensity
- 0/1/0. 1 credit(s) (plus extra credits for completion). Type of Completion: k (colloquium).
- Teacher(s)
- doc. Ing. Matej Lexa, Ph.D. (lecturer)
- Guaranteed by
- doc. Ing. Matej Lexa, Ph.D.
Department of Machine Learning and Data Processing – Faculty of Informatics
Supplier department: Department of Machine Learning and Data Processing – Faculty of Informatics - Timetable
- Mon 17. 2. to Fri 15. 5. Thu 9:00–9:50 C525
- Prerequisites
- Those who sign up for this interdisciplinary course should be able to read and comprehend a scientific paper or book chapter written in English. Deeper knowledge of algorithm design and programming will allow the particular student to focus more on the biological side of the studied problems or vice versa. Students of non-biological fields should be concurrently enrolled in, or have previously passed IV107 Bioinformatics I. Alternatively they may frequent the course with the consent of the teacher.
- Course Enrolment Limitations
- The course is also offered to the students of the fields other than those the course is directly associated with.
- fields of study / plans the course is directly associated with
- Image Processing and Analysis (programme FI, N-VIZ)
- Applied Informatics (programme FI, B-AP)
- Applied Informatics (programme FI, N-AP)
- Information Technology Security (eng.) (programme FI, N-IN)
- Information Technology Security (programme FI, N-IN)
- Bioinformatics and systems biology (programme FI, N-UIZD)
- Bioinformatics (programme FI, B-AP)
- Bioinformatics (programme FI, N-AP)
- Computer Games Development (programme FI, N-VIZ_A)
- Computer Graphics and Visualisation (programme FI, N-VIZ_A)
- Computer Networks and Communications (programme FI, N-PSKB_A)
- Cybersecurity Management (programme FI, N-RSSS_A)
- Formal analysis of computer systems (programme FI, N-TEI)
- Graphic design (programme FI, N-VIZ)
- Graphic Design (programme FI, N-VIZ_A)
- Hardware Systems (programme FI, N-PSKB_A)
- Hardware systems (programme FI, N-PSKB)
- Image Processing and Analysis (programme FI, N-VIZ_A)
- Information security (programme FI, N-PSKB)
- Information Systems (programme FI, N-IN)
- Informatics with another discipline (programme FI, B-BI)
- Informatics with another discipline (programme FI, B-EB)
- Informatics with another discipline (programme FI, B-FY)
- Informatics with another discipline (programme FI, B-GE)
- Informatics with another discipline (programme FI, B-GK)
- Informatics with another discipline (programme FI, B-CH)
- Informatics with another discipline (programme FI, B-IO)
- Informatics with another discipline (programme FI, B-MA)
- Informatics with another discipline (programme FI, B-SO)
- Informatics with another discipline (programme FI, B-TV)
- Informatics (programme FI, B-IN)
- Informatics (programme FI, B-INF) (2)
- Informatics (programme FI, M-IN)
- Informatics (programme FI, N-IN)
- Informatics in education (programme FI, B-IVV) (2)
- Information Security (programme FI, N-PSKB_A)
- Quantum and Other Nonclassical Computational Models (programme FI, N-TEI)
- Mathematical Informatics (programme FI, B-IN)
- Parallel and Distributed Systems (programme FI, B-IN)
- Parallel and Distributed Systems (programme FI, N-IN)
- Computer graphics and visualisation (programme FI, N-VIZ)
- Computer Graphics and Image Processing (programme FI, B-IN)
- Computer Graphics (programme FI, N-IN)
- Computer Networks and Communication (programme FI, B-IN)
- Computer Networks and Communication (programme FI, N-IN)
- Computer Networks and Communications (programme FI, N-PSKB)
- Computer Systems and Data Processing (programme FI, B-IN)
- Computer Systems (programme FI, N-IN)
- Principles of programming languages (programme FI, N-TEI)
- Programming and development (programme FI, B-PVA)
- Embedded Systems (eng.) (programme FI, N-IN)
- Programmable Technical Structures (programme FI, B-IN)
- Embedded Systems (programme FI, N-IN)
- Cybersecurity management (programme FI, N-RSSS)
- Services development management (programme FI, N-RSSS)
- Software Systems Development Management (programme FI, N-RSSS)
- Services Development Management (programme FI, N-RSSS_A)
- Service Science, Management and Engineering (eng.) (programme FI, N-AP)
- Service Science, Management and Engineering (programme FI, N-AP)
- Social Informatics (programme FI, B-AP)
- Software Systems Development Management (programme FI, N-RSSS_A)
- Software Systems (programme FI, N-PSKB_A)
- Software systems (programme FI, N-PSKB)
- Machine learning and artificial intelligence (programme FI, N-UIZD)
- Theoretical Informatics (programme FI, N-IN)
- Teacher of Informatics and IT administrator (programme FI, N-UCI)
- Informatics for secondary school teachers (programme FI, N-UCI) (2)
- Upper Secondary School Teacher Training in Informatics (programme FI, M-SS)
- Upper Secondary School Teacher Training in Informatics (programme FI, M-TV)
- Upper Secondary School Teacher Training in Informatics (programme FI, N-SS) (2)
- Artificial Intelligence and Natural Language Processing (programme FI, B-IN)
- Artificial Intelligence and Natural Language Processing (programme FI, N-IN)
- Computer Games Development (programme FI, N-VIZ)
- Big data (programme FI, N-UIZD)
- Image Processing (programme FI, N-AP)
- Natural language processing (programme FI, N-UIZD)
- Course objectives
- The Spring Term seminar covers "Biological sequence analysis, protein structure prediction, detection of genes, promoter sequences and other elements".
- Learning outcomes
- Students will gain insight into problems studied in bioinformatics; they will practice presentation and discussion techniques in front of an audience.
- Syllabus
- Students will chose publications to study recent methods in genomic sequence analysis (using suggested journal articles or other material approved by the teacher). Possible subjects of papers:
- Sequencing data processing
- Gene identification in DNA sequences
- Similarity between sequences
- Motif and pattern searching
- DNA and RNA secondary structure prediction
- Literature
- ZVELEBIL, Marketa J. and Jeremy O. BAUM. Understanding bioinformatics. New York, N.Y.: Garland Science, 2008, xxiii, 772. ISBN 9780815340249. info
- Teaching methods
- student presentations and discussion
- Assessment methods
- Each student will be evaluated based on his presentation of the studied paper. Those absent from presentations will take an oral exam of topics covered during the semester.
- Language of instruction
- English
- Follow-Up Courses
- Further comments (probably available only in Czech)
- Study Materials
The course is taught annually. - Teacher's information
- http://www.fi.muni.cz/~lexa/
IV106 Bioinformatics seminar
Faculty of InformaticsSpring 2019
- Extent and Intensity
- 0/1/0. 1 credit(s) (plus extra credits for completion). Type of Completion: k (colloquium).
- Teacher(s)
- doc. Ing. Matej Lexa, Ph.D. (lecturer)
- Guaranteed by
- doc. RNDr. Aleš Horák, Ph.D.
Department of Machine Learning and Data Processing – Faculty of Informatics
Supplier department: Department of Machine Learning and Data Processing – Faculty of Informatics - Timetable
- Wed 9:00–9:50 B411
- Prerequisites
- Those who sign up for this interdisciplinary course should be able to read and comprehend a scientific paper or book chapter written in English. Deeper knowledge of algorithm design and programming will allow the particular student to focus more on the biological side of the studied problems or vice versa. Students of non-biological fields should be concurrently enrolled in, or have previously passed IV107 Bioinformatics I. Alternatively they may frequent the course with the consent of the teacher.
- Course Enrolment Limitations
- The course is also offered to the students of the fields other than those the course is directly associated with.
- fields of study / plans the course is directly associated with
- Applied Informatics (programme FI, B-AP)
- Applied Informatics (programme FI, N-AP)
- Information Technology Security (eng.) (programme FI, N-IN)
- Information Technology Security (programme FI, N-IN)
- Bioinformatics (programme FI, B-AP)
- Bioinformatics (programme FI, N-AP)
- Information Systems (programme FI, N-IN)
- Informatics with another discipline (programme FI, B-BI)
- Informatics with another discipline (programme FI, B-EB)
- Informatics with another discipline (programme FI, B-FY)
- Informatics with another discipline (programme FI, B-GE)
- Informatics with another discipline (programme FI, B-GK)
- Informatics with another discipline (programme FI, B-CH)
- Informatics with another discipline (programme FI, B-IO)
- Informatics with another discipline (programme FI, B-MA)
- Informatics with another discipline (programme FI, B-SO)
- Informatics with another discipline (programme FI, B-TV)
- Informatics (programme FI, B-IN)
- Informatics (programme FI, M-IN)
- Informatics (programme FI, N-IN)
- Mathematical Informatics (programme FI, B-IN)
- Parallel and Distributed Systems (programme FI, B-IN)
- Parallel and Distributed Systems (programme FI, N-IN)
- Computer Graphics and Image Processing (programme FI, B-IN)
- Computer Graphics (programme FI, N-IN)
- Computer Networks and Communication (programme FI, B-IN)
- Computer Networks and Communication (programme FI, N-IN)
- Computer Systems and Data Processing (programme FI, B-IN)
- Computer Systems (programme FI, N-IN)
- Embedded Systems (eng.) (programme FI, N-IN)
- Programmable Technical Structures (programme FI, B-IN)
- Embedded Systems (programme FI, N-IN)
- Service Science, Management and Engineering (eng.) (programme FI, N-AP)
- Service Science, Management and Engineering (programme FI, N-AP)
- Social Informatics (programme FI, B-AP)
- Theoretical Informatics (programme FI, N-IN)
- Upper Secondary School Teacher Training in Informatics (programme FI, M-SS)
- Upper Secondary School Teacher Training in Informatics (programme FI, M-TV)
- Upper Secondary School Teacher Training in Informatics (programme FI, N-SS) (2)
- Artificial Intelligence and Natural Language Processing (programme FI, B-IN)
- Artificial Intelligence and Natural Language Processing (programme FI, N-IN)
- Image Processing (programme FI, N-AP)
- Course objectives
- The Spring Term seminar covers "Biological sequence analysis, protein structure prediction, detection of genes, promoter sequences and other elements".
Students will gain insight into problems studied in bioinformatics; they will practice presentation and discussion techniques in front of an audience. - Syllabus
- Students will chose publications to study recent methods in genomic sequence analysis (using suggested journal articles or other material approved by the teacher). Possible subjects of papers:
- Sequencing data processing
- Gene identification in DNA sequences
- Similarity between sequences
- Motif and pattern searching
- DNA and RNA secondary structure prediction
- Literature
- ZVELEBIL, Marketa J. and Jeremy O. BAUM. Understanding bioinformatics. New York, N.Y.: Garland Science, 2008, xxiii, 772. ISBN 9780815340249. info
- Teaching methods
- student presentations and discussion
- Assessment methods
- Each student will be evaluated based on his presentation of the studied paper. Those absent from presentations will take an oral exam of topics covered during the semester.
- Language of instruction
- English
- Follow-Up Courses
- Further comments (probably available only in Czech)
- Study Materials
The course is taught annually. - Teacher's information
- http://www.fi.muni.cz/~lexa/
IV106 Bioinformatics seminar
Faculty of InformaticsSpring 2018
- Extent and Intensity
- 0/1/0. 1 credit(s) (plus extra credits for completion). Type of Completion: k (colloquium).
- Teacher(s)
- doc. Ing. Matej Lexa, Ph.D. (lecturer)
- Guaranteed by
- doc. RNDr. Aleš Horák, Ph.D.
Department of Machine Learning and Data Processing – Faculty of Informatics
Supplier department: Department of Machine Learning and Data Processing – Faculty of Informatics - Timetable
- Thu 12:00–12:50 C416
- Prerequisites
- Those who sign up for this interdisciplinary course should be able to read and comprehend a scientific paper or book chapter written in English. Deeper knowledge of algorithm design and programming will allow the particular student to focus more on the biological side of the studied problems or vice versa. Students of non-biological fields should be concurrently enrolled in, or have previously passed IV107 Bioinformatics I. Alternatively they may frequent the course with the consent of the teacher.
- Course Enrolment Limitations
- The course is also offered to the students of the fields other than those the course is directly associated with.
- fields of study / plans the course is directly associated with
- Applied Informatics (programme FI, B-AP)
- Applied Informatics (programme FI, N-AP)
- Information Technology Security (eng.) (programme FI, N-IN)
- Information Technology Security (programme FI, N-IN)
- Bioinformatics (programme FI, B-AP)
- Bioinformatics (programme FI, N-AP)
- Information Systems (programme FI, N-IN)
- Informatics with another discipline (programme FI, B-BI)
- Informatics with another discipline (programme FI, B-EB)
- Informatics with another discipline (programme FI, B-FY)
- Informatics with another discipline (programme FI, B-GE)
- Informatics with another discipline (programme FI, B-GK)
- Informatics with another discipline (programme FI, B-CH)
- Informatics with another discipline (programme FI, B-IO)
- Informatics with another discipline (programme FI, B-MA)
- Informatics with another discipline (programme FI, B-SO)
- Informatics with another discipline (programme FI, B-TV)
- Informatics (programme FI, B-IN)
- Informatics (programme FI, M-IN)
- Informatics (programme FI, N-IN)
- Mathematical Informatics (programme FI, B-IN)
- Parallel and Distributed Systems (programme FI, B-IN)
- Parallel and Distributed Systems (programme FI, N-IN)
- Computer Graphics and Image Processing (programme FI, B-IN)
- Computer Graphics (programme FI, N-IN)
- Computer Networks and Communication (programme FI, B-IN)
- Computer Networks and Communication (programme FI, N-IN)
- Computer Systems and Data Processing (programme FI, B-IN)
- Computer Systems (programme FI, N-IN)
- Embedded Systems (eng.) (programme FI, N-IN)
- Programmable Technical Structures (programme FI, B-IN)
- Embedded Systems (programme FI, N-IN)
- Service Science, Management and Engineering (eng.) (programme FI, N-AP)
- Service Science, Management and Engineering (programme FI, N-AP)
- Social Informatics (programme FI, B-AP)
- Theoretical Informatics (programme FI, N-IN)
- Upper Secondary School Teacher Training in Informatics (programme FI, M-SS)
- Upper Secondary School Teacher Training in Informatics (programme FI, M-TV)
- Upper Secondary School Teacher Training in Informatics (programme FI, N-SS) (2)
- Artificial Intelligence and Natural Language Processing (programme FI, B-IN)
- Artificial Intelligence and Natural Language Processing (programme FI, N-IN)
- Image Processing (programme FI, N-AP)
- Course objectives
- The Spring Term seminar covers "Biological sequence analysis, protein structure prediction, detection of genes, promoter sequences and other elements".
Students will gain insight into problems studied in bioinformatics; they will practice presentation and discussion techniques in front of an audience. - Syllabus
- Students will chose publications to study recent methods in genomic sequence analysis (using suggested journal articles or other material approved by the teacher). Possible subjects of papers:
- Sequencing data processing
- Gene identification in DNA sequences
- Similarity between sequences
- Motif and pattern searching
- DNA and RNA secondary structure prediction
- Literature
- ZVELEBIL, Marketa J. and Jeremy O. BAUM. Understanding bioinformatics. New York, N.Y.: Garland Science, 2008, xxiii, 772. ISBN 9780815340249. info
- Teaching methods
- student presentations and discussion
- Assessment methods
- Each student will be evaluated based on his presentation of the studied paper. Those absent from presentations will take an oral exam of topics covered during the semester.
- Language of instruction
- English
- Follow-Up Courses
- Further comments (probably available only in Czech)
- Study Materials
The course is taught annually. - Teacher's information
- http://www.fi.muni.cz/~lexa/
IV106 Bioinformatics seminar
Faculty of InformaticsSpring 2017
- Extent and Intensity
- 0/1/0. 1 credit(s) (plus extra credits for completion). Type of Completion: k (colloquium).
- Teacher(s)
- doc. Ing. Matej Lexa, Ph.D. (lecturer)
- Guaranteed by
- doc. RNDr. Aleš Horák, Ph.D.
Department of Machine Learning and Data Processing – Faculty of Informatics
Supplier department: Department of Machine Learning and Data Processing – Faculty of Informatics - Timetable
- Tue 12:00–13:50 B411
- Prerequisites
- Those who sign up for this interdisciplinary course should be able to read and comprehend a scientific paper or book chapter written in English. Deeper knowledge of algorithm design and programming will allow the particular student to focus more on the biological side of the studied problems or vice versa. Students of non-biological fields should be concurrently enrolled in, or have previously passed IV107 Bioinformatics I. Alternatively they may frequent the course with the consent of the teacher.
- Course Enrolment Limitations
- The course is also offered to the students of the fields other than those the course is directly associated with.
- fields of study / plans the course is directly associated with
- Applied Informatics (programme FI, B-AP)
- Applied Informatics (programme FI, N-AP)
- Information Technology Security (eng.) (programme FI, N-IN)
- Information Technology Security (programme FI, N-IN)
- Bioinformatics (programme FI, B-AP)
- Bioinformatics (programme FI, N-AP)
- Information Systems (programme FI, N-IN)
- Informatics with another discipline (programme FI, B-BI)
- Informatics with another discipline (programme FI, B-EB)
- Informatics with another discipline (programme FI, B-FY)
- Informatics with another discipline (programme FI, B-GE)
- Informatics with another discipline (programme FI, B-GK)
- Informatics with another discipline (programme FI, B-CH)
- Informatics with another discipline (programme FI, B-IO)
- Informatics with another discipline (programme FI, B-MA)
- Informatics with another discipline (programme FI, B-SO)
- Informatics with another discipline (programme FI, B-TV)
- Informatics (programme FI, B-IN)
- Informatics (programme FI, M-IN)
- Informatics (programme FI, N-IN)
- Mathematical Informatics (programme FI, B-IN)
- Parallel and Distributed Systems (programme FI, B-IN)
- Parallel and Distributed Systems (programme FI, N-IN)
- Computer Graphics and Image Processing (programme FI, B-IN)
- Computer Graphics (programme FI, N-IN)
- Computer Networks and Communication (programme FI, B-IN)
- Computer Networks and Communication (programme FI, N-IN)
- Computer Systems and Data Processing (programme FI, B-IN)
- Computer Systems (programme FI, N-IN)
- Embedded Systems (eng.) (programme FI, N-IN)
- Programmable Technical Structures (programme FI, B-IN)
- Embedded Systems (programme FI, N-IN)
- Service Science, Management and Engineering (eng.) (programme FI, N-AP)
- Service Science, Management and Engineering (programme FI, N-AP)
- Social Informatics (programme FI, B-AP)
- Theoretical Informatics (programme FI, N-IN)
- Upper Secondary School Teacher Training in Informatics (programme FI, M-SS)
- Upper Secondary School Teacher Training in Informatics (programme FI, M-TV)
- Upper Secondary School Teacher Training in Informatics (programme FI, N-SS) (2)
- Artificial Intelligence and Natural Language Processing (programme FI, B-IN)
- Artificial Intelligence and Natural Language Processing (programme FI, N-IN)
- Image Processing (programme FI, N-AP)
- Course objectives
- The Spring Term seminar covers "Biological sequence analysis, protein structure prediction, detection of genes, promoter sequences and other elements".
Students will gain insight into problems studied in bioinformatics; they will practice presentation and discussion techniques in front of an audience. - Syllabus
- Students will chose publications to study recent methods in genomic sequence analysis (using suggested journal articles or other material approved by the teacher). Possible subjects of papers:
- Sequencing data processing
- Gene identification in DNA sequences
- Similarity between sequences
- Motif and pattern searching
- DNA and RNA secondary structure prediction
- Literature
- ZVELEBIL, Marketa J. and Jeremy O. BAUM. Understanding bioinformatics. New York, N.Y.: Garland Science, 2008, xxiii, 772. ISBN 9780815340249. info
- Teaching methods
- student presentations and discussion
- Assessment methods
- Each student will be evaluated based on his presentation of the studied paper. Those absent from presentations will take an oral exam of topics covered during the semester.
- Language of instruction
- English
- Follow-Up Courses
- Further comments (probably available only in Czech)
- Study Materials
The course is taught annually. - Teacher's information
- http://www.fi.muni.cz/~lexa/
IV106 Bionformatics seminar
Faculty of InformaticsSpring 2016
- Extent and Intensity
- 0/1/0. 1 credit(s) (plus extra credits for completion). Type of Completion: k (colloquium).
- Teacher(s)
- doc. Ing. Matej Lexa, Ph.D. (lecturer)
- Guaranteed by
- doc. RNDr. Aleš Horák, Ph.D.
Department of Machine Learning and Data Processing – Faculty of Informatics
Supplier department: Department of Machine Learning and Data Processing – Faculty of Informatics - Timetable
- Mon 8:00–9:50 C416
- Prerequisites
- Those who sign up for this interdisciplinary course should be able to read and comprehend a scientific paper or book chapter written in English. Deeper knowledge of algorithm design and programming will allow the particular student to focus more on the biological side of the studied problems or vice versa. Students of non-biological fields should be concurrently enrolled in, or have previously passed IV107 Bioinformatics I. Alternatively they may frequent the course with the consent of the teacher.
- Course Enrolment Limitations
- The course is also offered to the students of the fields other than those the course is directly associated with.
- fields of study / plans the course is directly associated with
- Applied Informatics (programme FI, B-AP)
- Applied Informatics (programme FI, N-AP)
- Information Technology Security (eng.) (programme FI, N-IN)
- Information Technology Security (programme FI, N-IN)
- Bioinformatics (programme FI, B-AP)
- Bioinformatics (programme FI, N-AP)
- Information Systems (programme FI, N-IN)
- Informatics with another discipline (programme FI, B-BI)
- Informatics with another discipline (programme FI, B-EB)
- Informatics with another discipline (programme FI, B-FY)
- Informatics with another discipline (programme FI, B-GE)
- Informatics with another discipline (programme FI, B-GK)
- Informatics with another discipline (programme FI, B-CH)
- Informatics with another discipline (programme FI, B-IO)
- Informatics with another discipline (programme FI, B-MA)
- Informatics with another discipline (programme FI, B-SO)
- Informatics with another discipline (programme FI, B-TV)
- Informatics (programme FI, B-IN)
- Informatics (programme FI, M-IN)
- Informatics (programme FI, N-IN)
- Mathematical Informatics (programme FI, B-IN)
- Parallel and Distributed Systems (programme FI, B-IN)
- Parallel and Distributed Systems (programme FI, N-IN)
- Computer Graphics and Image Processing (programme FI, B-IN)
- Computer Graphics (programme FI, N-IN)
- Computer Networks and Communication (programme FI, B-IN)
- Computer Networks and Communication (programme FI, N-IN)
- Computer Systems and Data Processing (programme FI, B-IN)
- Computer Systems (programme FI, N-IN)
- Embedded Systems (eng.) (programme FI, N-IN)
- Programmable Technical Structures (programme FI, B-IN)
- Embedded Systems (programme FI, N-IN)
- Service Science, Management and Engineering (eng.) (programme FI, N-AP)
- Service Science, Management and Engineering (programme FI, N-AP)
- Social Informatics (programme FI, B-AP)
- Theoretical Informatics (programme FI, N-IN)
- Upper Secondary School Teacher Training in Informatics (programme FI, M-SS)
- Upper Secondary School Teacher Training in Informatics (programme FI, M-TV)
- Upper Secondary School Teacher Training in Informatics (programme FI, N-SS) (2)
- Artificial Intelligence and Natural Language Processing (programme FI, B-IN)
- Artificial Intelligence and Natural Language Processing (programme FI, N-IN)
- Image Processing (programme FI, N-AP)
- Course objectives
- The Spring Term seminar covers "Biological sequence analysis, protein structure prediction, detection of genes, promoter sequences and other elements".
Students will gain insight into problems studied in bioinformatics; they will practice presentation and discussion techniques in front of an audience. - Syllabus
- Students will chose publications to study recent methods in genomic sequence analysis (using suggested journal articles or other material approved by the teacher). Possible subjects of papers:
- Sequencing data processing
- Gene identification in DNA sequences
- Similarity between sequences
- Motif and pattern searching
- DNA and RNA secondary structure prediction
- Literature
- ZVELEBIL, Marketa J. and Jeremy O. BAUM. Understanding bioinformatics. New York, N.Y.: Garland Science, 2008, xxiii, 772. ISBN 9780815340249. info
- Teaching methods
- student presentations and discussion
- Assessment methods
- Each student will be evaluated based on his presentation of the studied paper. Those absent from presentations will take an oral exam of topics covered during the semester.
- Language of instruction
- English
- Follow-Up Courses
- Further comments (probably available only in Czech)
- Study Materials
The course is taught annually. - Teacher's information
- http://www.fi.muni.cz/~lexa/
IV106 Bionformatics seminar
Faculty of InformaticsSpring 2015
- Extent and Intensity
- 0/1/0. 1 credit(s) (plus extra credits for completion). Type of Completion: k (colloquium).
- Teacher(s)
- doc. Ing. Matej Lexa, Ph.D. (lecturer)
- Guaranteed by
- doc. RNDr. Aleš Horák, Ph.D.
Department of Machine Learning and Data Processing – Faculty of Informatics
Supplier department: Department of Machine Learning and Data Processing – Faculty of Informatics - Timetable
- Fri 10:00–11:50 C416
- Prerequisites
- Those who sign up for this interdisciplinary course should be able to read and comprehend a scientific paper or book chapter written in English. Deeper knowledge of algorithm design and programming will allow the particular student to focus more on the biological side of the studied problems or vice versa. Students of non-biological fields should be concurrently enrolled in, or have previously passed IV107 Bioinformatics I. Alternatively they may frequent the course with the consent of the teacher.
- Course Enrolment Limitations
- The course is also offered to the students of the fields other than those the course is directly associated with.
- fields of study / plans the course is directly associated with
- Applied Informatics (programme FI, B-AP)
- Applied Informatics (programme FI, N-AP)
- Information Technology Security (programme FI, N-IN)
- Bioinformatics (programme FI, B-AP)
- Bioinformatics (programme FI, N-AP)
- Information Systems (programme FI, N-IN)
- Informatics with another discipline (programme FI, B-BI)
- Informatics with another discipline (programme FI, B-EB)
- Informatics with another discipline (programme FI, B-FY)
- Informatics with another discipline (programme FI, B-GE)
- Informatics with another discipline (programme FI, B-GK)
- Informatics with another discipline (programme FI, B-CH)
- Informatics with another discipline (programme FI, B-IO)
- Informatics with another discipline (programme FI, B-MA)
- Informatics with another discipline (programme FI, B-SO)
- Informatics with another discipline (programme FI, B-TV)
- Informatics (programme FI, B-IN)
- Informatics (programme FI, M-IN)
- Informatics (programme FI, N-IN)
- Mathematical Informatics (programme FI, B-IN)
- Parallel and Distributed Systems (programme FI, B-IN)
- Parallel and Distributed Systems (programme FI, N-IN)
- Computer Graphics and Image Processing (programme FI, B-IN)
- Computer Graphics (programme FI, N-IN)
- Computer Networks and Communication (programme FI, B-IN)
- Computer Networks and Communication (programme FI, N-IN)
- Computer Systems and Data Processing (programme FI, B-IN)
- Computer Systems (programme FI, N-IN)
- Embedded Systems (eng.) (programme FI, N-IN)
- Programmable Technical Structures (programme FI, B-IN)
- Embedded Systems (programme FI, N-IN)
- Service Science, Management and Engineering (eng.) (programme FI, N-AP)
- Service Science, Management and Engineering (programme FI, N-AP)
- Social Informatics (programme FI, B-AP)
- Theoretical Informatics (programme FI, N-IN)
- Upper Secondary School Teacher Training in Informatics (programme FI, M-SS)
- Upper Secondary School Teacher Training in Informatics (programme FI, M-TV)
- Upper Secondary School Teacher Training in Informatics (programme FI, N-SS) (2)
- Artificial Intelligence and Natural Language Processing (programme FI, B-IN)
- Artificial Intelligence and Natural Language Processing (programme FI, N-IN)
- Image Processing (programme FI, N-AP)
- Course objectives
- The Spring Term seminar covers "Biological sequence analysis, protein structure prediction, detection of genes, promoter sequences and other elements".
Students will gain insight into problems studied in bioinformatics; they will practice presentation and discussion techniques in front of an audience. - Syllabus
- Students will chose publications to study recent methods in genomic sequence analysis (using suggested journal articles or other material approved by the teacher). Possible subjects of papers:
- Sequencing data processing
- Gene identification in DNA sequences
- Similarity between sequences
- Motif and pattern searching
- DNA and RNA secondary structure prediction
- Literature
- ZVELEBIL, Marketa J. and Jeremy O. BAUM. Understanding bioinformatics. New York, N.Y.: Garland Science, 2008, xxiii, 772. ISBN 9780815340249. info
- Teaching methods
- student presentations and discussion
- Assessment methods
- Each student will be evaluated based on his presentation of the studied paper. Those absent from presentations will take an oral exam of topics covered during the semester.
- Language of instruction
- English
- Follow-Up Courses
- Further comments (probably available only in Czech)
- Study Materials
The course is taught annually. - Teacher's information
- http://www.fi.muni.cz/~lexa/
IV106 Bionformatics seminar
Faculty of InformaticsSpring 2014
- Extent and Intensity
- 0/1/0. 1 credit(s) (plus extra credits for completion). Type of Completion: k (colloquium).
- Teacher(s)
- doc. Ing. Matej Lexa, Ph.D. (lecturer)
- Guaranteed by
- prof. Ing. Václav Přenosil, CSc.
Department of Machine Learning and Data Processing – Faculty of Informatics
Supplier department: Department of Machine Learning and Data Processing – Faculty of Informatics - Timetable
- Wed 12:00–13:50 G107
- Prerequisites
- Those who sign up for this interdisciplinary course should be able to read and comprehend a scientific paper or book chapter written in English. Deeper knowledge of algorithm design and programming will allow the particular student to focus more on the biological side of the studied problems or vice versa. Students of non-biological fields should be concurrently enrolled in, or have previously passed IV107 Bioinformatics I. Alternatively they may frequent the course with the consent of the teacher.
- Course Enrolment Limitations
- The course is also offered to the students of the fields other than those the course is directly associated with.
- fields of study / plans the course is directly associated with
- Applied Informatics (programme FI, B-AP)
- Applied Informatics (programme FI, N-AP)
- Information Technology Security (programme FI, N-IN)
- Bioinformatics (programme FI, B-AP)
- Bioinformatics (programme FI, N-AP)
- Information Systems (programme FI, N-IN)
- Informatics with another discipline (programme FI, B-BI)
- Informatics with another discipline (programme FI, B-EB)
- Informatics with another discipline (programme FI, B-FY)
- Informatics with another discipline (programme FI, B-GE)
- Informatics with another discipline (programme FI, B-GK)
- Informatics with another discipline (programme FI, B-CH)
- Informatics with another discipline (programme FI, B-IO)
- Informatics with another discipline (programme FI, B-MA)
- Informatics with another discipline (programme FI, B-SO)
- Informatics with another discipline (programme FI, B-TV)
- Informatics (programme FI, B-IN)
- Informatics (programme FI, M-IN)
- Informatics (programme FI, N-IN)
- Mathematical Informatics (programme FI, B-IN)
- Parallel and Distributed Systems (programme FI, B-IN)
- Parallel and Distributed Systems (programme FI, N-IN)
- Computer Graphics and Image Processing (programme FI, B-IN)
- Computer Graphics (programme FI, N-IN)
- Computer Networks and Communication (programme FI, B-IN)
- Computer Networks and Communication (programme FI, N-IN)
- Computer Systems and Data Processing (programme FI, B-IN)
- Computer Systems (programme FI, N-IN)
- Embedded Systems (eng.) (programme FI, N-IN)
- Programmable Technical Structures (programme FI, B-IN)
- Embedded Systems (programme FI, N-IN)
- Service Science, Management and Engineering (eng.) (programme FI, N-AP)
- Service Science, Management and Engineering (programme FI, N-AP)
- Social Informatics (programme FI, B-AP)
- Theoretical Informatics (programme FI, N-IN)
- Upper Secondary School Teacher Training in Informatics (programme FI, M-SS)
- Upper Secondary School Teacher Training in Informatics (programme FI, M-TV)
- Upper Secondary School Teacher Training in Informatics (programme FI, N-SS) (2)
- Artificial Intelligence and Natural Language Processing (programme FI, B-IN)
- Artificial Intelligence and Natural Language Processing (programme FI, N-IN)
- Image Processing (programme FI, N-AP)
- Course objectives
- The Spring Term seminar covers "Biological sequence analysis, protein structure prediction, detection of genes, promoter sequences and other elements".
Students will gain insight into problems studied in bioinformatics; they will practice presentation and discussion techniques in front of an audience. - Syllabus
- Students will chose publications to study recent methods in genomic sequence analysis (using suggested journal articles or other material approved by the teacher). Possible subjects of papers:
- Sequencing data processing
- Gene identification in DNA sequences
- Similarity between sequences
- Motif and pattern searching
- DNA and RNA secondary structure prediction
- Literature
- ZVELEBIL, Marketa J. and Jeremy O. BAUM. Understanding bioinformatics. New York, N.Y.: Garland Science, 2008, xxiii, 772. ISBN 9780815340249. info
- Teaching methods
- student presentations and discussion
- Assessment methods
- Each student will be evaluated based on his presentation of the studied paper. Those absent from presentations will take an oral exam of topics covered during the semester.
- Language of instruction
- English
- Follow-Up Courses
- Further comments (probably available only in Czech)
- Study Materials
The course is taught annually. - Teacher's information
- http://www.fi.muni.cz/~lexa/
IV106 Bionformatics seminar
Faculty of InformaticsSpring 2013
- Extent and Intensity
- 0/1/0. 1 credit(s) (plus extra credits for completion). Type of Completion: k (colloquium).
- Teacher(s)
- doc. Ing. Matej Lexa, Ph.D. (lecturer)
- Guaranteed by
- prof. Ing. Václav Přenosil, CSc.
Department of Machine Learning and Data Processing – Faculty of Informatics
Supplier department: Department of Machine Learning and Data Processing – Faculty of Informatics - Timetable
- Fri 12:00–13:50 B116
- Prerequisites
- Those who sign up for this interdisciplinary course should be able to read and comprehend a scientific paper or book chapter written in English. Deeper knowledge of algorithm design and programming will allow the particular student to focus more on the biological side of the studied problems or vice versa. Students of non-biological fields should be concurrently enrolled in, or have previously passed IV107 Bioinformatics I. Alternatively they may frequent the course with the consent of the teacher.
- Course Enrolment Limitations
- The course is also offered to the students of the fields other than those the course is directly associated with.
- fields of study / plans the course is directly associated with
- Applied Informatics (programme FI, B-AP)
- Applied Informatics (programme FI, N-AP)
- Information Technology Security (programme FI, N-IN)
- Bioinformatics (programme FI, B-AP)
- Bioinformatics (programme FI, N-AP)
- Information Systems (programme FI, N-IN)
- Informatics with another discipline (programme FI, B-BI)
- Informatics with another discipline (programme FI, B-EB)
- Informatics with another discipline (programme FI, B-FY)
- Informatics with another discipline (programme FI, B-GE)
- Informatics with another discipline (programme FI, B-GK)
- Informatics with another discipline (programme FI, B-CH)
- Informatics with another discipline (programme FI, B-IO)
- Informatics with another discipline (programme FI, B-MA)
- Informatics with another discipline (programme FI, B-SO)
- Informatics with another discipline (programme FI, B-TV)
- Informatics (programme FI, B-IN)
- Informatics (programme FI, M-IN)
- Informatics (programme FI, N-IN)
- Mathematical Informatics (programme FI, B-IN)
- Parallel and Distributed Systems (programme FI, B-IN)
- Parallel and Distributed Systems (programme FI, N-IN)
- Computer Graphics and Image Processing (programme FI, B-IN)
- Computer Graphics (programme FI, N-IN)
- Computer Networks and Communication (programme FI, B-IN)
- Computer Networks and Communication (programme FI, N-IN)
- Computer Systems and Data Processing (programme FI, B-IN)
- Computer Systems (programme FI, N-IN)
- Embedded Systems (eng.) (programme FI, N-IN)
- Programmable Technical Structures (programme FI, B-IN)
- Embedded Systems (programme FI, N-IN)
- Service Science, Management and Engineering (eng.) (programme FI, N-AP)
- Service Science, Management and Engineering (programme FI, N-AP)
- Social Informatics (programme FI, B-AP)
- Theoretical Informatics (programme FI, N-IN)
- Upper Secondary School Teacher Training in Informatics (programme FI, M-SS)
- Upper Secondary School Teacher Training in Informatics (programme FI, M-TV)
- Upper Secondary School Teacher Training in Informatics (programme FI, N-SS) (2)
- Artificial Intelligence and Natural Language Processing (programme FI, B-IN)
- Artificial Intelligence and Natural Language Processing (programme FI, N-IN)
- Image Processing (programme FI, N-AP)
- Course objectives
- The Spring Term seminar covers "Biological sequence analysis, protein structure prediction, detection of genes, promoter sequences and other elements".
Students will gain insight into problems studied in bioinformatics; they will practice presentation and discussion techniques in front of an audience. - Syllabus
- Students will chose publications to study recent methods in genomic sequence analysis (using suggested journal articles or other material approved by the teacher). Possible subjects of papers:
- Sequencing data processing
- Gene identification in DNA sequences
- Similarity between sequences
- Motif and pattern searching
- DNA and RNA secondary structure prediction
- Literature
- ZVELEBIL, Marketa J. and Jeremy O. BAUM. Understanding bioinformatics. New York, N.Y.: Garland Science, 2008, xxiii, 772. ISBN 9780815340249. info
- Teaching methods
- student presentations and discussion
- Assessment methods
- Each student will be evaluated based on his presentation of the studied paper. Those absent from presentations will take an oral exam of topics covered during the semester.
- Language of instruction
- English
- Follow-Up Courses
- Further comments (probably available only in Czech)
- Study Materials
The course is taught annually. - Teacher's information
- http://www.fi.muni.cz/~lexa/
IV106 Bionformatics seminar
Faculty of InformaticsSpring 2012
- Extent and Intensity
- 0/1/0. 1 credit(s) (plus extra credits for completion). Type of Completion: k (colloquium).
- Teacher(s)
- doc. Ing. Matej Lexa, Ph.D. (lecturer)
- Guaranteed by
- prof. Ing. Václav Přenosil, CSc.
Department of Machine Learning and Data Processing – Faculty of Informatics
Supplier department: Department of Machine Learning and Data Processing – Faculty of Informatics - Prerequisites
- Those who sign up for this interdisciplinary course should be able to read and comprehend a scientific paper or book chapter written in English. Deeper knowledge of algorithm design and programming will allow the particular student to focus more on the biological side of the studied problems or vice versa. Students of non-biological fields should be concurrently enrolled in, or have previously passed IV107 Bioinformatics I. Alternatively they may frequent the course with the consent of the teacher.
- Course Enrolment Limitations
- The course is also offered to the students of the fields other than those the course is directly associated with.
- fields of study / plans the course is directly associated with
- Applied Informatics (programme FI, B-AP)
- Applied Informatics (programme FI, N-AP)
- Information Technology Security (programme FI, N-IN)
- Bioinformatics (programme FI, B-AP)
- Bioinformatics (programme FI, N-AP)
- Information Systems (programme FI, N-IN)
- Informatics with another discipline (programme FI, B-BI)
- Informatics with another discipline (programme FI, B-EB)
- Informatics with another discipline (programme FI, B-FY)
- Informatics with another discipline (programme FI, B-GE)
- Informatics with another discipline (programme FI, B-GK)
- Informatics with another discipline (programme FI, B-CH)
- Informatics with another discipline (programme FI, B-IO)
- Informatics with another discipline (programme FI, B-MA)
- Informatics with another discipline (programme FI, B-SO)
- Informatics with another discipline (programme FI, B-TV)
- Informatics (programme FI, B-IN)
- Informatics (programme FI, M-IN)
- Informatics (programme FI, N-IN)
- Mathematical Informatics (programme FI, B-IN)
- Parallel and Distributed Systems (programme FI, B-IN)
- Parallel and Distributed Systems (programme FI, N-IN)
- Computer Graphics and Image Processing (programme FI, B-IN)
- Computer Graphics (programme FI, N-IN)
- Computer Networks and Communication (programme FI, B-IN)
- Computer Networks and Communication (programme FI, N-IN)
- Computer Systems and Data Processing (programme FI, B-IN)
- Computer Systems (programme FI, N-IN)
- Embedded Systems (eng.) (programme FI, N-IN)
- Programmable Technical Structures (programme FI, B-IN)
- Embedded Systems (programme FI, N-IN)
- Service Science, Management and Engineering (eng.) (programme FI, N-AP)
- Service Science, Management and Engineering (programme FI, N-AP)
- Social Informatics (programme FI, B-AP)
- Theoretical Informatics (programme FI, N-IN)
- Upper Secondary School Teacher Training in Informatics (programme FI, M-SS)
- Upper Secondary School Teacher Training in Informatics (programme FI, M-TV)
- Upper Secondary School Teacher Training in Informatics (programme FI, N-SS) (2)
- Artificial Intelligence and Natural Language Processing (programme FI, B-IN)
- Artificial Intelligence and Natural Language Processing (programme FI, N-IN)
- Image Processing (programme FI, N-AP)
- Course objectives
- The Spring Term seminar covers "Genomic sequence analysis for detection of genes, promoter sequences and other elements".
Students will gain insight into problems studied in bioinformatics; they will practice presentation and discussion techniques in front of an audience. - Syllabus
- Students will chose publications to study recent methods in genomic sequence analysis (using suggested journal articles or other material approved by the teacher). Possible subjects of papers:
- Gene identification in DNA sequences
- Similarity between sequences
- Motif and pattern searching
- DNA and RNA secondary structure prediction
- Literature
- ZVELEBIL, Marketa J. and Jeremy O. BAUM. Understanding bioinformatics. New York, N.Y.: Garland Science, 2008, xxiii, 772. ISBN 9780815340249. info
- Teaching methods
- student presentations and discussion
- Assessment methods
- Each student will be evaluated based on his presentation of the studied paper. Those absent from presentations will take an oral exam of topics covered during the semester.
- Language of instruction
- English
- Follow-Up Courses
- Further comments (probably available only in Czech)
- Study Materials
The course is taught annually.
The course is taught: every week. - Teacher's information
- http://www.fi.muni.cz/~lexa/
IV106 Bionformatics seminar
Faculty of InformaticsSpring 2011
- Extent and Intensity
- 0/1/0. 1 credit(s) (plus extra credits for completion). Type of Completion: k (colloquium).
- Teacher(s)
- doc. Ing. Matej Lexa, Ph.D. (lecturer)
- Guaranteed by
- prof. Ing. Václav Přenosil, CSc.
Department of Machine Learning and Data Processing – Faculty of Informatics - Timetable
- Tue 8:00–8:50 B411
- Prerequisites
- Those who sign up for this interdisciplinary course should be able to read and comprehend a scientific paper or book chapter written in English. Deeper knowledge of algorithm design and programming will allow the particular student to focus more on the biological side of the studied problems or vice versa. Students of non-biological fields should be concurrently enrolled in, or have previously passed IV107 Bioinformatics I. Alternatively they may frequent the course with the consent of the teacher.
- Course Enrolment Limitations
- The course is also offered to the students of the fields other than those the course is directly associated with.
- fields of study / plans the course is directly associated with
- Applied Informatics (programme FI, B-AP)
- Applied Informatics (programme FI, N-AP)
- Information Technology Security (programme FI, N-IN)
- Bioinformatics (programme FI, B-AP)
- Bioinformatics (programme FI, N-AP)
- Information Systems (programme FI, N-IN)
- Informatics with another discipline (programme FI, B-BI)
- Informatics with another discipline (programme FI, B-FY)
- Informatics with another discipline (programme FI, B-GE)
- Informatics with another discipline (programme FI, B-GK)
- Informatics with another discipline (programme FI, B-CH)
- Informatics with another discipline (programme FI, B-IO)
- Informatics with another discipline (programme FI, B-MA)
- Informatics with another discipline (programme FI, B-SO)
- Informatics with another discipline (programme FI, B-TV)
- Informatics (programme FI, B-IN)
- Informatics (programme FI, M-IN)
- Informatics (programme FI, N-IN)
- Mathematical Informatics (programme FI, B-IN)
- Parallel and Distributed Systems (programme FI, B-IN)
- Parallel and Distributed Systems (programme FI, N-IN)
- Computer Graphics and Image Processing (programme FI, B-IN)
- Computer Graphics (programme FI, N-IN)
- Computer Networks and Communication (programme FI, B-IN)
- Computer Networks and Communication (programme FI, N-IN)
- Computer Systems and Data Processing (programme FI, B-IN)
- Computer Systems (programme FI, N-IN)
- Embedded Systems (eng.) (programme FI, N-IN)
- Programmable Technical Structures (programme FI, B-IN)
- Embedded Systems (programme FI, N-IN)
- Service Science, Management and Engineering (eng.) (programme FI, N-AP)
- Service Science, Management and Engineering (programme FI, N-AP)
- Theoretical Informatics (programme FI, N-IN)
- Upper Secondary School Teacher Training in Informatics (programme FI, M-SS)
- Upper Secondary School Teacher Training in Informatics (programme FI, M-TV)
- Upper Secondary School Teacher Training in Informatics (programme FI, N-SS) (2)
- Artificial Intelligence and Natural Language Processing (programme FI, B-IN)
- Artificial Intelligence and Natural Language Processing (programme FI, N-IN)
- Image Processing (programme FI, N-AP)
- Course objectives
- The Spring Term seminar covers "Genomic sequence analysis for detection of genes, promoter sequences and other elements".
Students will gain insight into problems studied in bioinformatics; they will practice presentation and discussion techniques in front of an audience. - Syllabus
- Students will chose publications to study recent methods in genomic sequence analysis (using suggested journal articles or other material approved by the teacher). Possible subjects of papers:
- Gene identification in DNA sequences
- Similarity between sequences
- Motif and pattern searching
- DNA and RNA secondary structure prediction
- Literature
- ZVELEBIL, Marketa J. and Jeremy O. BAUM. Understanding bioinformatics. New York, N.Y.: Garland Science, 2008, xxiii, 772. ISBN 9780815340249. info
- Teaching methods
- student presentations and discussion
- Assessment methods
- Each student will be evaluated based on his presentation of the studied paper. Those absent from presentations will take an oral exam of topics covered during the semester.
- Language of instruction
- English
- Follow-Up Courses
- Further comments (probably available only in Czech)
- Study Materials
The course is taught annually. - Teacher's information
- http://www.fi.muni.cz/~lexa/
IV106 Bionformatics seminar
Faculty of InformaticsSpring 2010
- Extent and Intensity
- 0/1/0. 1 credit(s) (plus extra credits for completion). Type of Completion: k (colloquium).
- Teacher(s)
- doc. Ing. Matej Lexa, Ph.D. (lecturer)
- Guaranteed by
- prof. Ing. Václav Přenosil, CSc.
Department of Machine Learning and Data Processing – Faculty of Informatics - Timetable
- Mon 9:00–9:50 B411
- Prerequisites
- Those who sign up for this interdisciplinary course should be able to read and comprehend a scientific paper or book chapter written in English. Deeper knowledge of algorithm design and programming will allow the particular student to focus more on the biological side of the studied problems or vice versa. Students of non-biological fields should be concurrently enrolled in, or have previously passed IV107 Bioinformatics I. Alternatively they may frequent the course with the consent of the teacher.
- Course Enrolment Limitations
- The course is also offered to the students of the fields other than those the course is directly associated with.
- fields of study / plans the course is directly associated with
- Applied Informatics (programme FI, B-AP)
- Applied Informatics (programme FI, N-AP)
- Information Technology Security (programme FI, N-IN)
- Bioinformatics (programme FI, B-AP)
- Bioinformatics (programme FI, N-AP)
- Information Systems (programme FI, N-IN)
- Informatics with another discipline (programme FI, B-BI)
- Informatics with another discipline (programme FI, B-FY)
- Informatics with another discipline (programme FI, B-GE)
- Informatics with another discipline (programme FI, B-GK)
- Informatics with another discipline (programme FI, B-CH)
- Informatics with another discipline (programme FI, B-IO)
- Informatics with another discipline (programme FI, B-MA)
- Informatics with another discipline (programme FI, B-SO)
- Informatics with another discipline (programme FI, B-TV)
- Informatics (programme FI, B-IN)
- Informatics (programme FI, M-IN)
- Informatics (programme FI, N-IN)
- Mathematical Informatics (programme FI, B-IN)
- Parallel and Distributed Systems (programme FI, B-IN)
- Parallel and Distributed Systems (programme FI, N-IN)
- Computer Graphics and Image Processing (programme FI, B-IN)
- Computer Graphics (programme FI, N-IN)
- Computer Networks and Communication (programme FI, B-IN)
- Computer Networks and Communication (programme FI, N-IN)
- Computer Systems and Data Processing (programme FI, B-IN)
- Computer Systems (programme FI, N-IN)
- Embedded Systems (eng.) (programme FI, N-IN)
- Programmable Technical Structures (programme FI, B-IN)
- Embedded Systems (programme FI, N-IN)
- Service Science, Management and Engineering (eng.) (programme FI, N-AP)
- Service Science, Management and Engineering (programme FI, N-AP)
- Theoretical Informatics (programme FI, N-IN)
- Upper Secondary School Teacher Training in Informatics (programme FI, M-SS)
- Upper Secondary School Teacher Training in Informatics (programme FI, M-TV)
- Upper Secondary School Teacher Training in Informatics (programme FI, N-SS) (2)
- Artificial Intelligence and Natural Language Processing (programme FI, B-IN)
- Artificial Intelligence and Natural Language Processing (programme FI, N-IN)
- Image Processing (programme FI, N-AP)
- Course objectives
- The Spring Term seminar covers "Genomic sequence analysis for detection of genes, promoter sequences and other elements".
Students will gain insight into problems studied in bioinformatics; they will practice presentation and discussion techniques in front of an audience. - Syllabus
- Students will chose publications to study recent methods in genomic sequence analysis (using suggested journal articles or other material approved by the teacher). Possible subjects of papers:
- Gene identification in DNA sequences
- Similarity between sequences
- Motif and pattern searching
- DNA and RNA secondary structure prediction
- Literature
- ZVELEBIL, Marketa J. and Jeremy O. BAUM. Understanding bioinformatics. New York, N.Y.: Garland Science, 2008, xxiii, 772. ISBN 9780815340249. info
- Teaching methods
- student presentations and discussion
- Assessment methods
- Each student will be evaluated based on his presentation of the studied paper. Those absent from presentations will take an oral exam of topics covered during the semester.
- Language of instruction
- English
- Follow-Up Courses
- Further comments (probably available only in Czech)
- Study Materials
The course is taught annually. - Teacher's information
- http://www.fi.muni.cz/~lexa/
IV106 Bionformatics seminar
Faculty of InformaticsSpring 2009
- Extent and Intensity
- 0/1/0. 1 credit(s) (plus extra credits for completion). Type of Completion: k (colloquium).
- Teacher(s)
- doc. Ing. Matej Lexa, Ph.D. (lecturer)
- Guaranteed by
- prof. Ing. Václav Přenosil, CSc.
Department of Machine Learning and Data Processing – Faculty of Informatics - Timetable
- Tue 9:00–9:50 B411
- Prerequisites
- Those who sign up for this interdisciplinary course should be able to read and comprehend a scientific paper or book chapter written in English. Deeper knowledge of algorithm design and programming will allow the particular student to focus more on the biological side of the studied problems or vice versa. Students of non-biological fields should be concurrently enrolled in, or have previously passed IV107 Bioinformatics I. Alternatively they may frequent the course with the consent of the teacher.
- Course Enrolment Limitations
- The course is also offered to the students of the fields other than those the course is directly associated with.
- fields of study / plans the course is directly associated with
- Applied Informatics (programme FI, B-AP)
- Applied Informatics (programme FI, N-AP)
- Information Technology Security (programme FI, N-IN)
- Bioinformatics (programme FI, B-AP)
- Bioinformatics (programme FI, N-AP)
- Information Systems (programme FI, N-IN)
- Informatics with another discipline (programme FI, B-BI)
- Informatics with another discipline (programme FI, B-FY)
- Informatics with another discipline (programme FI, B-GE)
- Informatics with another discipline (programme FI, B-GK)
- Informatics with another discipline (programme FI, B-CH)
- Informatics with another discipline (programme FI, B-IO)
- Informatics with another discipline (programme FI, B-MA)
- Informatics with another discipline (programme FI, B-SO)
- Informatics with another discipline (programme FI, B-TV)
- Informatics (programme FI, B-IN)
- Informatics (programme FI, M-IN)
- Informatics (programme FI, N-IN)
- Mathematical Informatics (programme FI, B-IN)
- Parallel and Distributed Systems (programme FI, B-IN)
- Parallel and Distributed Systems (programme FI, N-IN)
- Computer Graphics and Image Processing (programme FI, B-IN)
- Computer Graphics (programme FI, N-IN)
- Computer Networks and Communication (programme FI, B-IN)
- Computer Networks and Communication (programme FI, N-IN)
- Computer Systems and Data Processing (programme FI, B-IN)
- Computer Systems (programme FI, N-IN)
- Embedded Systems (eng.) (programme FI, N-IN)
- Programmable Technical Structures (programme FI, B-IN)
- Theoretical Informatics (programme FI, N-IN)
- Upper Secondary School Teacher Training in Informatics (programme FI, M-SS)
- Upper Secondary School Teacher Training in Informatics (programme FI, M-TV)
- Upper Secondary School Teacher Training in Informatics (programme FI, N-SS) (2)
- Artificial Intelligence and Natural Language Processing (programme FI, B-IN)
- Artificial Intelligence and Natural Language Processing (programme FI, N-IN)
- Image Processing (programme FI, N-AP)
- Course objectives
- This seminar is a new applied subject available at the Faculty of Informatics. It will lead the students into the fascinating world of molecules, genes and proteins. The Spring Term seminar will be titled "Genomic sequence analysis for detection of genes, promoter sequences and other elements". The course will convene for 1hr weekly. Every student that presents his material and receives at least 50% of the maximal score on the final test will pass the course.
- Syllabus
- Students will chose publications to study recent methods in genomic sequence analysis (using suggested journal articles or other material approved by the teacher).
- Assessment methods (in Czech)
- Studenti samostatně nastudují a prezentují svým kolegům konkrétní metodu pro předpovídání elementů genomových sekvencí. Na konci kurzu absolvují studenti krátký kontrolní test. Kolokvium absolvuje každý student, který odprezentuje nastudovanou metodu a získá nejméně 50% bodů na kontrolním testu.
- Language of instruction
- English
- Follow-Up Courses
- Further Comments
- The course is taught annually.
- Teacher's information
- http://www.fi.muni.cz/~lexa/
IV106 Bionformatics seminar
Faculty of InformaticsSpring 2008
- Extent and Intensity
- 0/1/0. 1 credit(s) (plus extra credits for completion). Type of Completion: k (colloquium).
- Teacher(s)
- doc. Ing. Matej Lexa, Ph.D. (lecturer)
- Guaranteed by
- prof. Ing. Václav Přenosil, CSc.
Department of Machine Learning and Data Processing – Faculty of Informatics - Timetable
- Tue 12:00–12:50 B411
- Prerequisites
- Those who sign up for this interdisciplinary course should be able to read and comprehend a scientific paper or book chapter written in English. Deeper knowledge of algorithm design and programming will allow the particular student to focus more on the biological side of the studied problems or vice versa. Students of non-biological fields should be concurrently enrolled in, or have previously passed IV107 Bioinformatics I. Alternatively they may frequent the course with the consent of the teacher.
- Course Enrolment Limitations
- The course is also offered to the students of the fields other than those the course is directly associated with.
- fields of study / plans the course is directly associated with
- Applied Informatics (programme FI, B-AP)
- Applied Informatics (programme FI, N-AP)
- Information Technology Security (programme FI, N-IN)
- Bioinformatics (programme FI, B-AP)
- Bioinformatics (programme FI, N-AP)
- Information Systems (programme FI, N-IN)
- Informatics with another discipline (programme FI, B-BI)
- Informatics with another discipline (programme FI, B-FY)
- Informatics with another discipline (programme FI, B-GE)
- Informatics with another discipline (programme FI, B-GK)
- Informatics with another discipline (programme FI, B-CH)
- Informatics with another discipline (programme FI, B-IO)
- Informatics with another discipline (programme FI, B-MA)
- Informatics with another discipline (programme FI, B-SO)
- Informatics with another discipline (programme FI, B-TV)
- Informatics (programme FI, B-IN)
- Informatics (programme FI, M-IN)
- Informatics (programme FI, N-IN)
- Mathematical Informatics (programme FI, B-IN)
- Parallel and Distributed Systems (programme FI, B-IN)
- Parallel and Distributed Systems (programme FI, N-IN)
- Computer Graphics and Image Processing (programme FI, B-IN)
- Computer Graphics (programme FI, N-IN)
- Computer Networks and Communication (programme FI, B-IN)
- Computer Networks and Communication (programme FI, N-IN)
- Computer Systems and Data Processing (programme FI, B-IN)
- Computer Systems (programme FI, N-IN)
- Embedded Systems (eng.) (programme FI, N-IN)
- Programmable Technical Structures (programme FI, B-IN)
- Theoretical Informatics (programme FI, N-IN)
- Upper Secondary School Teacher Training in Informatics (programme FI, M-SS)
- Upper Secondary School Teacher Training in Informatics (programme FI, M-TV)
- Upper Secondary School Teacher Training in Informatics (programme FI, N-SS) (2)
- Artificial Intelligence and Natural Language Processing (programme FI, B-IN)
- Artificial Intelligence and Natural Language Processing (programme FI, N-IN)
- Image Processing (programme FI, N-AP)
- Course objectives
- This seminar is a new applied subject available at the Faculty of Informatics. It will lead the students into the fascinating world of molecules, genes and proteins. The Spring Term seminar will be titled "Genomic sequence analysis for detection of genes, promoter sequences and other elements". The course will convene for 1hr weekly. Every student that presents his material and receives at least 50% of the maximal score on the final test will pass the course.
- Syllabus
- Students will chose publications to study recent methods in genomic sequence analysis (using suggested journal articles or other material approved by the teacher).
- Assessment methods (in Czech)
- Studenti samostatně nastudují a prezentují svým kolegům konkrétní metodu pro předpovídání elementů genomových sekvencí. Na konci kurzu absolvují studenti krátký kontrolní test. Kolokvium absolvuje každý student, který odprezentuje nastudovanou metodu a získá nejméně 50% bodů na kontrolním testu.
- Language of instruction
- English
- Follow-Up Courses
- Further Comments
- Study Materials
The course is taught annually. - Teacher's information
- http://www.fi.muni.cz/~lexa/
IV106 Bionformatics seminar
Faculty of InformaticsSpring 2007
- Extent and Intensity
- 0/1/0. 1 credit(s) (plus extra credits for completion). Type of Completion: k (colloquium).
- Teacher(s)
- doc. Ing. Matej Lexa, Ph.D. (lecturer)
- Guaranteed by
- prof. Ing. Václav Přenosil, CSc.
Department of Machine Learning and Data Processing – Faculty of Informatics - Timetable
- Tue 12:00–12:50 B411
- Prerequisites
- Those who sign up for this interdisciplinary course should be able to read and comprehend a scientific paper or book chapter written in English. Deeper knowledge of algorithm design and programming will allow the particular student to focus more on the biological side of the studied problems or vice versa. Students of non-biological fields should be concurrently enrolled in, or have previously passed IV107 Bioinformatics I. Alternatively they may frequent the course with the consent of the teacher.
- Course Enrolment Limitations
- The course is also offered to the students of the fields other than those the course is directly associated with.
- fields of study / plans the course is directly associated with
- Applied Informatics (programme FI, B-AP)
- Applied Informatics (programme FI, N-AP)
- Informatics with another discipline (programme FI, B-BI)
- Informatics with another discipline (programme FI, B-FY)
- Informatics with another discipline (programme FI, B-GE)
- Informatics with another discipline (programme FI, B-GK)
- Informatics with another discipline (programme FI, B-CH)
- Informatics with another discipline (programme FI, B-IO)
- Informatics with another discipline (programme FI, B-MA)
- Informatics with another discipline (programme FI, B-SO)
- Informatics with another discipline (programme FI, B-TV)
- Informatics (programme FI, B-IN)
- Informatics (programme FI, D-IN)
- Informatics (programme FI, M-IN)
- Informatics (programme FI, N-IN)
- Upper Secondary School Teacher Training in Informatics (programme FI, M-SS)
- Upper Secondary School Teacher Training in Informatics (programme FI, M-TV)
- Upper Secondary School Teacher Training in Informatics (programme FI, N-SS)
- Course objectives
- This seminar is a new applied subject available at the Faculty of Informatics. It will lead the students into the fascinating world of molecules, genes and proteins. The Spring Term seminar will be titled "Genomic sequence analysis for detection of genes, promoter sequences and other elements". The course will convene for 1hr weekly. Every student that presents his material and receives at least 50% of the maximal score on the final test will pass the course.
- Syllabus
- Students will chose publications to study recent methods in genomic sequence analysis (using suggested journal articles or other material approved by the teacher).
- Assessment methods (in Czech)
- Studenti samostatně nastudují a prezentují svým kolegům konkrétní metodu pro předpovídání elementů genomových sekvencí. Na konci kurzu absolvují studenti krátký kontrolní test. Kolokvium absolvuje každý student, který odprezentuje nastudovanou metodu a získá nejméně 50% bodů na kontrolním testu.
- Language of instruction
- Czech
- Follow-Up Courses
- Further Comments
- The course is taught annually.
- Teacher's information
- http://www.fi.muni.cz/~lexa/
IV106 Bionformatics seminar
Faculty of InformaticsSpring 2006
- Extent and Intensity
- 0/1/0. 1 credit(s) (plus extra credits for completion). Type of Completion: k (colloquium).
- Teacher(s)
- doc. Ing. Matej Lexa, Ph.D. (lecturer)
- Guaranteed by
- prof. Ing. Václav Přenosil, CSc.
Department of Machine Learning and Data Processing – Faculty of Informatics - Timetable
- Tue 13:00–13:50 B411
- Prerequisites
- Those who sign up for this interdisciplinary course should be able to read and comprehend a scientific paper or book chapter written in English. Deeper knowledge of algorithm design and programming will allow the particular student to focus more on the biological side of the studied problems or vice versa. Students of non-biological fields should be concurrently enrolled in, or have previously passed IV107 Bioinformatics I. Alternatively they may frequent the course with the consent of the teacher.
- Course Enrolment Limitations
- The course is also offered to the students of the fields other than those the course is directly associated with.
- fields of study / plans the course is directly associated with
- Applied Informatics (programme FI, B-AP)
- Applied Informatics (programme FI, N-AP)
- Informatics with another discipline (programme FI, B-BI)
- Informatics with another discipline (programme FI, B-FY)
- Informatics with another discipline (programme FI, B-GE)
- Informatics with another discipline (programme FI, B-GK)
- Informatics with another discipline (programme FI, B-CH)
- Informatics with another discipline (programme FI, B-IO)
- Informatics with another discipline (programme FI, B-MA)
- Informatics with another discipline (programme FI, B-SO)
- Informatics with another discipline (programme FI, B-TV)
- Informatics (programme FI, B-IN)
- Informatics (programme FI, D-IN)
- Informatics (programme FI, M-IN)
- Informatics (programme FI, N-IN)
- Upper Secondary School Teacher Training in Informatics (programme FI, M-SS)
- Upper Secondary School Teacher Training in Informatics (programme FI, M-TV)
- Upper Secondary School Teacher Training in Informatics (programme FI, N-SS)
- Course objectives
- This seminar is a new applied subject available at the Faculty of Informatics. It will lead the students into the fascinating world of molecules, genes and proteins. The Spring Term seminar will be titled "Genomic sequence analysis for detection of genes, promoter sequences and other elements". The course will convene for 1hr weekly. Every student that presents his material and receives at least 50% of the maximal score on the final test will pass the course.
- Syllabus
- Students will chose publications to study recent methods in genomic sequence analysis (using suggested journal articles or other material approved by the teacher).
- Assessment methods (in Czech)
- Studenti samostatně nastudují a prezentují svým kolegům konkrétní metodu pro předpovídání elementů genomových sekvencí. Na konci kurzu absolvují studenti krátký kontrolní test. Kolokvium absolvuje každý student, který odprezentuje nastudovanou metodu a získá nejméně 50% bodů na kontrolním testu.
- Language of instruction
- Czech
- Follow-Up Courses
- Further Comments
- The course is taught annually.
- Teacher's information
- http://www.fi.muni.cz/~lexa/
IV106 Bionformatics seminar
Faculty of InformaticsSpring 2005
- Extent and Intensity
- 0/1/0. 1 credit(s) (plus extra credits for completion). Type of Completion: k (colloquium).
- Teacher(s)
- doc. Ing. Matej Lexa, Ph.D. (lecturer)
- Guaranteed by
- prof. PhDr. Karel Pala, CSc.
Department of Machine Learning and Data Processing – Faculty of Informatics - Timetable
- Tue 11:00–11:50 B411
- Prerequisites
- Those who sign up for this interdisciplinary course should be able to read and comprehend a scientific paper or book chapter written in English. Deeper knowledge of algorithm design and programming will allow the particular student to focus more on the biological side of the studied problems or vice versa. Students of non-biological fields should be concurrently enrolled in, or have previously passed IV107 Bioinformatics I. Alternatively they may frequent the course with the consent of the teacher.
- Course Enrolment Limitations
- The course is also offered to the students of the fields other than those the course is directly associated with.
- fields of study / plans the course is directly associated with
- Applied Informatics (programme FI, B-AP)
- Applied Informatics (programme FI, N-AP)
- Informatics with another discipline (programme FI, B-BI)
- Informatics with another discipline (programme FI, B-FY)
- Informatics with another discipline (programme FI, B-GE)
- Informatics with another discipline (programme FI, B-GK)
- Informatics with another discipline (programme FI, B-CH)
- Informatics with another discipline (programme FI, B-IO)
- Informatics with another discipline (programme FI, B-MA)
- Informatics with another discipline (programme FI, B-SO)
- Informatics with another discipline (programme FI, B-TV)
- Informatics (programme FI, B-IN)
- Informatics (programme FI, D-IN)
- Informatics (programme FI, M-IN)
- Informatics (programme FI, N-IN)
- Upper Secondary School Teacher Training in Informatics (programme FI, M-SS)
- Upper Secondary School Teacher Training in Informatics (programme FI, M-TV)
- Upper Secondary School Teacher Training in Informatics (programme FI, N-SS)
- Course objectives
- This seminar is a new applied subject available at the Faculty of Informatics. It will lead the students into the fascinating world of molecules, genes and proteins. The Spring Term seminar will be titled "Genomic sequence analysis for detection of genes, promoter sequences and other elements". The course will convene for 1hr weekly. Every student that presents his material and receives at least 50% of the maximal score on the final test will pass the course.
- Syllabus
- Students will chose publications to study recent methods in genomic sequence analysis (using suggested journal articles or other material approved by the teacher).
- Assessment methods (in Czech)
- Studenti samostatně nastudují a prezentují svým kolegům konkrétní metodu pro předpovídání elementů genomových sekvencí. Na konci kurzu absolvují studenti krátký kontrolní test. Kolokvium absolvuje každý student, který odprezentuje nastudovanou metodu a získá nejméně 50% bodů na kontrolním testu.
- Language of instruction
- Czech
- Follow-Up Courses
- Further Comments
- The course is taught annually.
- Teacher's information
- http://www.fi.muni.cz/~lexa/
- Enrolment Statistics (Spring 2025, recent)