CytoPacq v2.0

SVOBODA, David, Luděk MATYSKA and Vladimír ULMAN. CytoPacq v2.0. 2013.

Basic information

• Original name: CytoPacq v2.0
• Name in Czech: CytoPacq v2.0
• Authors: SVOBODA, David (203 Czech Republic, guarantor, belonging to the institution), Luděk MATYSKA (203 Czech Republic, belonging to the institution) and Vladimír ULMAN (203 Czech Republic, belonging to the institution).
• Edition: 2013.

Other information

• Original language: English
• Type of outcome: Software
• Field of Study: 20200 2.2 Electrical engineering, Electronic engineering, Information engineering
• Country of publisher: Czech Republic
• Confidentiality degree: is not subject to a state or trade secret
• WWW: URL
• RIV identification code: RIV/00216224:14330/13:00066205
• Organization unit: Faculty of Informatics
• Keywords in English: simulation; on-line web interface
• Technical parameters: Pro využití softwaru je nutné postupovat podle licence GNU GPL v3. Odpovědná osoba pro jednání: David Svoboda, Fakulta informatiky, Masarykova univerzita, Botanická 68a, Brno, 602 00, [e-mail], tel. [phone]
• Tags: International impact

Abstract

CytoPacq v2.0 is nontrivial extension of CytoPacq toolkit developed in 2009. Newly, the distribution of cell nuclei within the specimen can be controlled by the user. The phenomenon called uneven illumination is now based on extensive experimental measurements. The computational kernel, which is located on server-side, is now more robust and offer better communication user interface. Namely, the user is notified via e-mail if something important happens (simulation failure, simulation completed, waiting for user input). Moreover, the user can interrupt the computation. The application also offers sample large pre-generated image dataset (68 GB) which is free to use.

Links

• GBP302/12/G157, research and development project: Name: Dynamika a organizace chromosomů během buněčného cyklu a při diferenciaci v normě a patologii

Investor: Czech Science Foundation