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@inproceedings{1114457,
author = {Klement, Matej and Šafránek, David and Děd, Tadeáš and Pejznoch, Aleš and Nedbal, Ladislav and Steuer, Ralf and Červený, Jan and Mueller, Stefan},
address = {Neuveden},
booktitle = {Proceedings of the fourth International Workshop on Interactions between Computer Science and Biology (CS2Bio'13)},
doi = {http://dx.doi.org/10.1016/j.entcs.2013.11.006},
keywords = {systems biology; modelling; mode repository; database},
howpublished = {elektronická verze "online"},
language = {eng},
location = {Neuveden},
pages = {61-67},
publisher = {Elsevier},
title = {A Comprehensive Web-based Platform For Domain-Specific Biological Models},
url = {http://dx.doi.org/10.1016/j.entcs.2013.11.006},
year = {2013}
}
TY - JOUR
ID - 1114457
AU - Klement, Matej - Šafránek, David - Děd, Tadeáš - Pejznoch, Aleš - Nedbal, Ladislav - Steuer, Ralf - Červený, Jan - Mueller, Stefan
PY - 2013
TI - A Comprehensive Web-based Platform For Domain-Specific Biological Models
PB - Elsevier
CY - Neuveden
KW - systems biology
KW - modelling
KW - mode repository
KW - database
UR - http://dx.doi.org/10.1016/j.entcs.2013.11.006
L2 - http://dx.doi.org/10.1016/j.entcs.2013.11.006
N2 - A Comprehensive Modeling Platform, that is, a general framework for public sharing, annotation, and visualization of domain-specific biological models, is presented. For a selected organism, the framework is instantiated as a web-based application which allows to capture several aspects of biological models represented as biochemical reaction networks or ordinary differential equations. The key feature of the instantiation for a given organism relies on mapping kinetic models to a precise textual and a schematic graphical representation of the related biological knowledge, thereby supporting the systems biological view of the modeled organism. Besides model repository and annotation, the platform includes basic model analysis features such as simulation and static analysis.
ER -
KLEMENT, Matej, David ŠAFRÁNEK, Tadeáš DĚD, Aleš PEJZNOCH, Ladislav NEDBAL, Ralf STEUER, Jan ČERVENÝ and Stefan MUELLER. A Comprehensive Web-based Platform For Domain-Specific Biological Models. Online. In \textit{Proceedings of the fourth International Workshop on Interactions between Computer Science and Biology (CS2Bio'13)}. Neuveden: Elsevier, 2013, p.~61-67. ISSN~1571-0661. Available from: https://dx.doi.org/10.1016/j.entcs.2013.11.006.
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