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@inproceedings{1124393,
author = {Karas, Pavel and Kuderjavý, Michal and Svoboda, David},
address = {Neuveden},
booktitle = {Algorithms and Architectures for Parallel Processing},
doi = {http://dx.doi.org/10.1007/978-3-319-03859-9_24},
editor = {Kołodziej, Joanna and Martino, Beniamino and Talia, Domenico and Xiong, Kaiqi},
keywords = {deconvolution; gpu; multi-gpu; parallelization; implementation; algorithm; em-mle; richardson-lucy; ictm; wiener},
howpublished = {tištěná verze "print"},
language = {eng},
location = {Neuveden},
isbn = {978-3-319-03858-2},
pages = {279-290},
publisher = {Springer International Publishing},
title = {Deconvolution of huge 3-D images: Parallelization strategies on a multi-GPU system},
url = {http://dx.doi.org/10.1007/978-3-319-03859-9_24},
year = {2013}
}
TY - JOUR
ID - 1124393
AU - Karas, Pavel - Kuderjavý, Michal - Svoboda, David
PY - 2013
TI - Deconvolution of huge 3-D images: Parallelization strategies on a multi-GPU system
PB - Springer International Publishing
CY - Neuveden
SN - 9783319038582
KW - deconvolution
KW - gpu
KW - multi-gpu
KW - parallelization
KW - implementation
KW - algorithm
KW - em-mle
KW - richardson-lucy
KW - ictm
KW - wiener
UR - http://dx.doi.org/10.1007/978-3-319-03859-9_24
L2 - http://dx.doi.org/10.1007/978-3-319-03859-9_24
N2 - In this paper, we discuss strategies to parallelize selected deconvolution methods on a multi-GPU system. We provide a comparison of several approaches to split the deconvolution into subtasks while keeping the amount of costly data transfers as low as possible, and propose own implementation of three deconvolution methods which achieves up to 65x speedup over the CPU one. In the experimental part, we analyse how the individual stages of the computation contribute to the overall computation time as well as how the multi-GPU implementation scales in various setups. Finally, we identify bottlenecks of the system.
ER -
KARAS, Pavel, Michal KUDERJAVÝ and David SVOBODA. Deconvolution of huge 3-D images: Parallelization strategies on a multi-GPU system. In Kołodziej, Joanna and Martino, Beniamino and Talia, Domenico and Xiong, Kaiqi. \textit{Algorithms and Architectures for Parallel Processing}. Neuveden: Springer International Publishing, 2013, p.~279-290. ISBN~978-3-319-03858-2. Available from: https://dx.doi.org/10.1007/978-3-319-03859-9\_{}24.
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