NIHARIKA, Neha, Hana MOSKALÍKOVÁ, Jasvinder KAUR, Miroslava SEDLÁČKOVÁ, Aleš HAMPL, Jiří DAMBORSKÝ, Zbyněk PROKOP and Rup LAL. Novosphingobium barchaimii sp nov., isolated from hexachlorocyclohexane-contaminated soil. International Journal of Systematic and Evolutionary Microbiology. SOC GENERAL MICROBIOLOGY, 2013, vol. 63, Part 2, p. 667-672. ISSN 1466-5026. Available from: https://dx.doi.org/10.1099/ijs.0.039826-0.
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Basic information
Original name Novosphingobium barchaimii sp nov., isolated from hexachlorocyclohexane-contaminated soil
Authors NIHARIKA, Neha (356 India), Hana MOSKALÍKOVÁ (203 Czech Republic), Jasvinder KAUR (356 India), Miroslava SEDLÁČKOVÁ (203 Czech Republic, belonging to the institution), Aleš HAMPL (203 Czech Republic, belonging to the institution), Jiří DAMBORSKÝ (203 Czech Republic, guarantor, belonging to the institution), Zbyněk PROKOP (203 Czech Republic, belonging to the institution) and Rup LAL (356 India).
Edition International Journal of Systematic and Evolutionary Microbiology, SOC GENERAL MICROBIOLOGY, 2013, 1466-5026.
Other information
Original language English
Type of outcome Article in a journal
Field of Study 10600 1.6 Biological sciences
Country of publisher United Kingdom of Great Britain and Northern Ireland
Confidentiality degree is not subject to a state or trade secret
Impact factor Impact factor: 2.798
RIV identification code RIV/00216224:14310/13:00065825
Organization unit Faculty of Science
Doi http://dx.doi.org/10.1099/ijs.0.039826-0
UT WoS 000317170400043
Keywords in English IDENTIFICATION; MICROORGANISMS; SPHINGOMONAS; SPHINGOBIUM; ACID
Tags AKR, podil, rivok
Tags International impact, Reviewed
Changed by Changed by: Ing. Mgr. Věra Pospíšilíková, učo 9005. Changed: 5/3/2014 15:33.
Abstract
A yellow pigmented bacterial strain, designated LL02T was isolated from HCH contaminated soil from Spolana, Neratovice former Czech producer of Lindane. A neighbour-joining tree based on 16S rRNA gene sequences showed that strain LL02T occupied a distinct phylogenetic position in the Novophingobium cluster, showing the highest similarity with Novosphingobium resinovorum NCIMB 8767T (98.59%). The DNA-DNA relatedness values of strain LL02T with its phylogenetic neighbours were found to be less than 70% indicating that strain LL02T represents a novel species of the genus Novosphingobium. The DNA G+C content of strain LL02T was 67.72 plus minus 0 %. The major respiratory quinone present was ubiquinone Q10. The polar lipid profile of the strain LL02T also corresponded to those reported for other Novosphingobium species (phosphatidylethanolamine, diphosphatidylglycerol, phosphatidylcholine, phosphatidylglycerol, phosphatidylmonomethylethanolamine and sphingoglycolipids), thus supporting its identification as a member of the genus Novosphingobium.
Links
ED0001/01/01, research and development projectName: CETOCOEN
GAP202/10/1435, research and development projectName: Analýza a vizualizace proteinových struktur
Investor: Czech Science Foundation, Analysis and Visualization of Protein Structures
GA203/08/0114, research and development projectName: Specifické iontové efekty pro proteiny v roztocích a podobné biologicky relevantní systémy.
Investor: Czech Science Foundation, Specific ion effects for proteins in solutions and related biologically relevant systems
IAA401630901, research and development projectName: Evoluce substrátové specifity u enzymů aktivních s xenobiotickými látkami
Investor: Academy of Sciences of the Czech Republic, Evolution of substrate specificity in enzymes acting on xenobiotic compounds
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