Novosphingobium barchaimii sp nov., isolated from
hexachlorocyclohexane-contaminated soil

J 2013

Novosphingobium barchaimii sp nov., isolated from hexachlorocyclohexane-contaminated soil

NIHARIKA, Neha, Hana MOSKALÍKOVÁ, Jasvinder KAUR, Miroslava SEDLÁČKOVÁ, Aleš HAMPL et. al.

Basic information

Original name

Novosphingobium barchaimii sp nov., isolated from hexachlorocyclohexane-contaminated soil

Authors

NIHARIKA, Neha (356 India), Hana MOSKALÍKOVÁ (203 Czech Republic), Jasvinder KAUR (356 India), Miroslava SEDLÁČKOVÁ (203 Czech Republic, belonging to the institution), Aleš HAMPL (203 Czech Republic, belonging to the institution), Jiří DAMBORSKÝ (203 Czech Republic, guarantor, belonging to the institution), Zbyněk PROKOP (203 Czech Republic, belonging to the institution) and Rup LAL (356 India)

Edition

International Journal of Systematic and Evolutionary Microbiology, SOC GENERAL MICROBIOLOGY, 2013, 1466-5026

Other information

Language

English

Type of outcome

Článek v odborném periodiku

Field of Study

10600 1.6 Biological sciences

Country of publisher

United Kingdom of Great Britain and Northern Ireland

Confidentiality degree

není předmětem státního či obchodního tajemství

Impact factor

Impact factor: 2.798

RIV identification code

RIV/00216224:14310/13:00065825

Organization unit

Faculty of Science

DOI

http://dx.doi.org/10.1099/ijs.0.039826-0

UT WoS

000317170400043

Keywords in English

IDENTIFICATION; MICROORGANISMS; SPHINGOMONAS; SPHINGOBIUM; ACID

Abstract

V originále

A yellow pigmented bacterial strain, designated LL02T was isolated from HCH contaminated soil from Spolana, Neratovice former Czech producer of Lindane. A neighbour-joining tree based on 16S rRNA gene sequences showed that strain LL02T occupied a distinct phylogenetic position in the Novophingobium cluster, showing the highest similarity with Novosphingobium resinovorum NCIMB 8767T (98.59%). The DNA-DNA relatedness values of strain LL02T with its phylogenetic neighbours were found to be less than 70% indicating that strain LL02T represents a novel species of the genus Novosphingobium. The DNA G+C content of strain LL02T was 67.72 plus minus 0 %. The major respiratory quinone present was ubiquinone Q10. The polar lipid profile of the strain LL02T also corresponded to those reported for other Novosphingobium species (phosphatidylethanolamine, diphosphatidylglycerol, phosphatidylcholine, phosphatidylglycerol, phosphatidylmonomethylethanolamine and sphingoglycolipids), thus supporting its identification as a member of the genus Novosphingobium.

Links

ED0001/01/01, research and development project

Name: CETOCOEN

GAP202/10/1435, research and development project

Name: Analýza a vizualizace proteinových struktur

Investor: Czech Science Foundation, Analysis and Visualization of Protein Structures

GA203/08/0114, research and development project

Name: Specifické iontové efekty pro proteiny v roztocích a podobné biologicky relevantní systémy.

Investor: Czech Science Foundation, Specific ion effects for proteins in solutions and related biologically relevant systems

IAA401630901, research and development project

Name: Evoluce substrátové specifity u enzymů aktivních s xenobiotickými látkami

Investor: Academy of Sciences of the Czech Republic, Evolution of substrate specificity in enzymes acting on xenobiotic compounds

Citovat

NIHARIKA, Neha, Hana MOSKALÍKOVÁ, Jasvinder KAUR, Miroslava SEDLÁČKOVÁ, Aleš HAMPL, Jiří DAMBORSKÝ, Zbyněk PROKOP and Rup LAL. Novosphingobium barchaimii sp nov., isolated from hexachlorocyclohexane-contaminated soil. International Journal of Systematic and Evolutionary Microbiology. SOC GENERAL MICROBIOLOGY, 2013, vol. 63, Part 2, p. 667-672. ISSN 1466-5026. Available from: https://dx.doi.org/10.1099/ijs.0.039826-0.

@article{1138890,
   author = {Niharika, Neha and Moskalíková, Hana and Kaur, Jasvinder and Sedláčková, Miroslava and Hampl, Aleš and Damborský, Jiří and Prokop, Zbyněk and Lal, Rup},
   article_number = {Part 2},
   doi = {http://dx.doi.org/10.1099/ijs.0.039826-0},
   keywords = {IDENTIFICATION; MICROORGANISMS; SPHINGOMONAS; SPHINGOBIUM; ACID},
   language = {eng},
   issn = {1466-5026},
   journal = {International Journal of Systematic and Evolutionary Microbiology},
   title = {Novosphingobium barchaimii sp nov., isolated from hexachlorocyclohexane-contaminated soil},
   volume = {63},
   year = {2013}
}

TY  - JOUR
ID  - 1138890
AU  - Niharika, Neha - Moskalíková, Hana - Kaur, Jasvinder - Sedláčková, Miroslava - Hampl, Aleš - Damborský, Jiří - Prokop, Zbyněk - Lal, Rup
PY  - 2013
TI  - Novosphingobium barchaimii sp nov., isolated from hexachlorocyclohexane-contaminated soil
JF  - International Journal of Systematic and Evolutionary Microbiology
VL  - 63
IS  - Part 2
SP  - 667-672
EP  - 667-672
PB  - SOC GENERAL MICROBIOLOGY
SN  - 14665026
KW  - IDENTIFICATION
KW  - MICROORGANISMS
KW  - SPHINGOMONAS
KW  - SPHINGOBIUM
KW  - ACID
N2  - A yellow pigmented bacterial strain, designated LL02T was isolated from HCH contaminated soil from Spolana, Neratovice former Czech producer of Lindane. A neighbour-joining tree based on 16S rRNA gene sequences showed that strain LL02T occupied a distinct phylogenetic position in the Novophingobium cluster, showing the highest similarity with Novosphingobium resinovorum NCIMB 8767T (98.59%). The DNA-DNA relatedness values of strain LL02T with its phylogenetic neighbours were found to be less than 70% indicating that strain LL02T represents a novel species of the genus Novosphingobium. The DNA G+C content of strain LL02T was 67.72 plus minus 0 %. The major respiratory quinone present was ubiquinone Q10. The polar lipid profile of the strain LL02T also corresponded to those reported for other Novosphingobium species (phosphatidylethanolamine, diphosphatidylglycerol, phosphatidylcholine, phosphatidylglycerol, phosphatidylmonomethylethanolamine and sphingoglycolipids), thus supporting its identification as a member of the genus Novosphingobium.
ER  -

NIHARIKA, Neha, Hana MOSKALÍKOVÁ, Jasvinder KAUR, Miroslava SEDLÁČKOVÁ, Aleš HAMPL, Jiří DAMBORSKÝ, Zbyněk PROKOP and Rup LAL. Novosphingobium barchaimii sp nov., isolated from hexachlorocyclohexane-contaminated soil. \textit{International Journal of Systematic and Evolutionary Microbiology}. SOC GENERAL MICROBIOLOGY, 2013, vol.~63, Part 2, p.~667-672. ISSN~1466-5026. Available from: https://dx.doi.org/10.1099/ijs.0.039826-0.

Detailed Information on Publication Record