J 2013

Novosphingobium barchaimii sp nov., isolated from hexachlorocyclohexane-contaminated soil

NIHARIKA, Neha, Hana MOSKALÍKOVÁ, Jasvinder KAUR, Miroslava SEDLÁČKOVÁ, Aleš HAMPL et. al.

Basic information

Original name

Novosphingobium barchaimii sp nov., isolated from hexachlorocyclohexane-contaminated soil

Authors

NIHARIKA, Neha (356 India), Hana MOSKALÍKOVÁ (203 Czech Republic), Jasvinder KAUR (356 India), Miroslava SEDLÁČKOVÁ (203 Czech Republic, belonging to the institution), Aleš HAMPL (203 Czech Republic, belonging to the institution), Jiří DAMBORSKÝ (203 Czech Republic, guarantor, belonging to the institution), Zbyněk PROKOP (203 Czech Republic, belonging to the institution) and Rup LAL (356 India)

Edition

International Journal of Systematic and Evolutionary Microbiology, SOC GENERAL MICROBIOLOGY, 2013, 1466-5026

Other information

Language

English

Type of outcome

Článek v odborném periodiku

Field of Study

10600 1.6 Biological sciences

Country of publisher

United Kingdom of Great Britain and Northern Ireland

Confidentiality degree

není předmětem státního či obchodního tajemství

Impact factor

Impact factor: 2.798

RIV identification code

RIV/00216224:14310/13:00065825

Organization unit

Faculty of Science

UT WoS

000317170400043

Keywords in English

IDENTIFICATION; MICROORGANISMS; SPHINGOMONAS; SPHINGOBIUM; ACID

Tags

Tags

International impact, Reviewed
Změněno: 5/3/2014 15:33, Ing. Mgr. Věra Pospíšilíková

Abstract

V originále

A yellow pigmented bacterial strain, designated LL02T was isolated from HCH contaminated soil from Spolana, Neratovice former Czech producer of Lindane. A neighbour-joining tree based on 16S rRNA gene sequences showed that strain LL02T occupied a distinct phylogenetic position in the Novophingobium cluster, showing the highest similarity with Novosphingobium resinovorum NCIMB 8767T (98.59%). The DNA-DNA relatedness values of strain LL02T with its phylogenetic neighbours were found to be less than 70% indicating that strain LL02T represents a novel species of the genus Novosphingobium. The DNA G+C content of strain LL02T was 67.72 plus minus 0 %. The major respiratory quinone present was ubiquinone Q10. The polar lipid profile of the strain LL02T also corresponded to those reported for other Novosphingobium species (phosphatidylethanolamine, diphosphatidylglycerol, phosphatidylcholine, phosphatidylglycerol, phosphatidylmonomethylethanolamine and sphingoglycolipids), thus supporting its identification as a member of the genus Novosphingobium.

Links

ED0001/01/01, research and development project
Name: CETOCOEN
GAP202/10/1435, research and development project
Name: Analýza a vizualizace proteinových struktur
Investor: Czech Science Foundation, Analysis and Visualization of Protein Structures
GA203/08/0114, research and development project
Name: Specifické iontové efekty pro proteiny v roztocích a podobné biologicky relevantní systémy.
Investor: Czech Science Foundation, Specific ion effects for proteins in solutions and related biologically relevant systems
IAA401630901, research and development project
Name: Evoluce substrátové specifity u enzymů aktivních s xenobiotickými látkami
Investor: Academy of Sciences of the Czech Republic, Evolution of substrate specificity in enzymes acting on xenobiotic compounds