KAUR, Jasvinder, Hana MOSKALÍKOVÁ, Neha NIHARIKA, Miroslava SEDLÁČKOVÁ, Aleš HAMPL, Jiří DAMBORSKÝ, Zbyněk PROKOP and Rup LAL. Sphingobium baderi sp nov., isolated from a hexachlorocyclohexane dump site. International Journal of Systematic and Evolutionary Microbiology. SOC GENERAL MICROBIOLOGY, 2013, vol. 63, Part 2, p. 673-678. ISSN 1466-5026. Available from: https://dx.doi.org/10.1099/ijs.0.039834-0.
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Basic information
Original name Sphingobium baderi sp nov., isolated from a hexachlorocyclohexane dump site
Authors KAUR, Jasvinder (356 India), Hana MOSKALÍKOVÁ (203 Czech Republic), Neha NIHARIKA (356 India), Miroslava SEDLÁČKOVÁ (203 Czech Republic, belonging to the institution), Aleš HAMPL (203 Czech Republic, belonging to the institution), Jiří DAMBORSKÝ (203 Czech Republic, guarantor, belonging to the institution), Zbyněk PROKOP (203 Czech Republic, belonging to the institution) and Rup LAL (356 India).
Edition International Journal of Systematic and Evolutionary Microbiology, SOC GENERAL MICROBIOLOGY, 2013, 1466-5026.
Other information
Original language English
Type of outcome Article in a journal
Field of Study 10600 1.6 Biological sciences
Country of publisher United Kingdom of Great Britain and Northern Ireland
Confidentiality degree is not subject to a state or trade secret
Impact factor Impact factor: 2.798
RIV identification code RIV/00216224:14310/13:00065826
Organization unit Faculty of Science
Doi http://dx.doi.org/10.1099/ijs.0.039834-0
UT WoS 000317170400044
Keywords in English SPHINGOMONAS; DEGRADATION; MICROORGANISMS; IDENTIFICATION; SEQUENCE; STRAIN; ACID
Tags AKR, podil, rivok
Tags International impact, Reviewed
Changed by Changed by: Ing. Mgr. Věra Pospíšilíková, učo 9005. Changed: 5/3/2014 15:40.
Abstract
A gram negative, rod-shaped and white coloured bacterial strain designated LL03T, was isolated from hexachlorocyclohexane-contaminated soil in Spolana Neratovice, former Czech producer of Lindane. The strain LL03T was found to be a degrader of alfa-, gama- and delta- isomers of Hexachlorocyclohexane while no significant degradation activity was observed for beta-isomer. A neighbour-joining tree based on 16S rRNA gene sequences showed that strain LL03T occupied a distinct phylogenetic position in the Sphingobium cluster, showing the highest similarity with Sphingobium wenxiniae CC-FH12-1 (99.2%). The DNA G+C content of strain LL03T was 67.0 mol %. The DNA-DNA relatedness values of the strain LL03T with its close phylogenetic neighbours were below the threshold level of 70 %, supporting its identification as a novel species of the genus Sphingobium.
Links
ED0001/01/01, research and development projectName: CETOCOEN
GAP202/10/1435, research and development projectName: Analýza a vizualizace proteinových struktur
Investor: Czech Science Foundation, Analysis and Visualization of Protein Structures
GA203/08/0114, research and development projectName: Specifické iontové efekty pro proteiny v roztocích a podobné biologicky relevantní systémy.
Investor: Czech Science Foundation, Specific ion effects for proteins in solutions and related biologically relevant systems
IAA401630901, research and development projectName: Evoluce substrátové specifity u enzymů aktivních s xenobiotickými látkami
Investor: Academy of Sciences of the Czech Republic, Evolution of substrate specificity in enzymes acting on xenobiotic compounds
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