NON-RIGID CONTOUR-BASED TEMPORAL REGISTRATION OF 2D CELL NUCLEI
IMAGES USING THE NAVIER EQUATION

D 2014

NON-RIGID CONTOUR-BASED TEMPORAL REGISTRATION OF 2D CELL NUCLEI IMAGES USING THE NAVIER EQUATION

SOROKIN, Dmitry, Marco TEKTONIDIS, Karl ROHR and Pavel MATULA

Basic information

Original name

NON-RIGID CONTOUR-BASED TEMPORAL REGISTRATION OF 2D CELL NUCLEI IMAGES USING THE NAVIER EQUATION

Authors

SOROKIN, Dmitry (643 Russian Federation, guarantor, belonging to the institution), Marco TEKTONIDIS (276 Germany), Karl ROHR (276 Germany) and Pavel MATULA (203 Czech Republic, belonging to the institution)

Edition

Beijing, IEEE International Symposium on Biomedical Imaging: Nano to Macro, p. 746-749, 4 pp. 2014

Publisher

IEEE

Other information

Language

English

Type of outcome

Stať ve sborníku

Field of Study

20200 2.2 Electrical engineering, Electronic engineering, Information engineering

Country of publisher

United States of America

Confidentiality degree

není předmětem státního či obchodního tajemství

Publication form

electronic version available online

RIV identification code

RIV/00216224:14330/14:00073449

Organization unit

Faculty of Informatics

ISBN

978-1-4673-1959-1

DOI

http://dx.doi.org/10.1109/ISBI.2014.6867978

Keywords in English

Biomedical image analysis; Image sequence analysis; Contour-based registration

Abstract

V originále

In live cell imaging it is essential to analyze the pure motion of subnuclear proteins without influence of the cell nucleus motion and deformation which is referred to as nucleus global motion. In this work, we propose a 2D contour-based image registration approach for compensation of the global motion of the nucleus. Compared to a previous contour-based approach, our approach employs an explicit rigid registration step to compensate the nucleus translation and rotation, it uses morphological contour matching for establishing more reliable correspondences between contours in consecutive frames, and utilizes the Navier equation for more realistically modeling the nucleus deformation. Our approach was successfully applied to real live cell microscopy image sequences and an experimental comparison with an existing contour-based registration method and an intensity-based registration method has been performed.

Links

CZ.1.07/2.3.00/30.0030, interní kód MU

Name: Rozvoj lidských zdrojů pro oblast buněčné biologie

Investor: Ministry of Education, Youth and Sports of the CR, 2.3 Human resources in research and development

GBP302/12/G157, research and development project

Name: Dynamika a organizace chromosomů během buněčného cyklu a při diferenciaci v normě a patologii

Investor: Czech Science Foundation

Citovat

SOROKIN, Dmitry, Marco TEKTONIDIS, Karl ROHR and Pavel MATULA. NON-RIGID CONTOUR-BASED TEMPORAL REGISTRATION OF 2D CELL NUCLEI IMAGES USING THE NAVIER EQUATION. Online. In IEEE International Symposium on Biomedical Imaging: Nano to Macro. Beijing: IEEE, 2014, p. 746-749. ISBN 978-1-4673-1959-1. Available from: https://dx.doi.org/10.1109/ISBI.2014.6867978.

@inproceedings{1139066,
   author = {Sorokin, Dmitry and Tektonidis, Marco and Rohr, Karl and Matula, Pavel},
   address = {Beijing},
   booktitle = {IEEE International Symposium on Biomedical Imaging: Nano to Macro},
   doi = {http://dx.doi.org/10.1109/ISBI.2014.6867978},
   keywords = {Biomedical image analysis; Image sequence analysis; Contour-based registration},
   howpublished = {elektronická verze "online"},
   language = {eng},
   location = {Beijing},
   isbn = {978-1-4673-1959-1},
   pages = {746-749},
   publisher = {IEEE},
   title = {NON-RIGID CONTOUR-BASED TEMPORAL REGISTRATION OF 2D CELL NUCLEI IMAGES USING THE NAVIER EQUATION},
   year = {2014}
}

TY  - JOUR
ID  - 1139066
AU  - Sorokin, Dmitry - Tektonidis, Marco - Rohr, Karl - Matula, Pavel
PY  - 2014
TI  - NON-RIGID CONTOUR-BASED TEMPORAL REGISTRATION OF 2D CELL NUCLEI IMAGES USING THE NAVIER EQUATION
PB  - IEEE
CY  - Beijing
SN  - 9781467319591
KW  - Biomedical image analysis
KW  - Image sequence analysis
KW  - Contour-based registration
N2  - In live cell imaging it is essential to analyze the pure motion of subnuclear proteins without influence of the cell nucleus motion and deformation which is referred to as nucleus global motion. In this work, we propose a 2D contour-based image registration approach for compensation of the global motion of the nucleus. Compared to a previous contour-based approach, our approach employs an explicit rigid registration step to compensate the nucleus translation and rotation, it uses morphological contour matching for establishing more reliable correspondences between contours in consecutive frames, and utilizes the Navier equation for more realistically modeling the nucleus deformation. Our approach was successfully applied to real live cell microscopy image sequences and an experimental comparison with an existing contour-based registration method and an intensity-based registration method has been performed.
ER  -

SOROKIN, Dmitry, Marco TEKTONIDIS, Karl ROHR and Pavel MATULA. NON-RIGID CONTOUR-BASED TEMPORAL REGISTRATION OF 2D CELL NUCLEI IMAGES USING THE NAVIER EQUATION. Online. In \textit{IEEE International Symposium on Biomedical Imaging: Nano to Macro}. Beijing: IEEE, 2014, p.~746-749. ISBN~978-1-4673-1959-1. Available from: https://dx.doi.org/10.1109/ISBI.2014.6867978.

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