J 2013

Using cryoEM Reconstruction and Phase Extension to Determine Crystal Structure of Bacteriophage I center dot 6 Major Capsid Protein

NĚMEČEK, Daniel, Pavel PLEVKA and Evzen BOURA

Basic information

Original name

Using cryoEM Reconstruction and Phase Extension to Determine Crystal Structure of Bacteriophage I center dot 6 Major Capsid Protein

Authors

NĚMEČEK, Daniel (203 Czech Republic, guarantor, belonging to the institution), Pavel PLEVKA (203 Czech Republic, belonging to the institution) and Evzen BOURA (203 Czech Republic)

Edition

The Protein Journal, NEW YORK, SPRINGER, 2013, 1572-3887

Other information

Language

English

Type of outcome

Článek v odborném periodiku

Field of Study

10600 1.6 Biological sciences

Country of publisher

United States of America

Confidentiality degree

není předmětem státního či obchodního tajemství

References:

URL

Impact factor

Impact factor: 1.039

RIV identification code

RIV/00216224:14740/13:00072307

Organization unit

Central European Institute of Technology

DOI

http://dx.doi.org/10.1007/s10930-013-9526-x

UT WoS

000328080300006

Keywords in English

Molecular replacement; Cryo-electron microscopy; Non-crystallographic symmetry; Virus capsid protein; Phase extension

Tags

ok, rivok

Tags

International impact, Reviewed
Změněno: 8/4/2014 01:46, Olga Křížová

Abstract

V originále

Bacteriophage I center dot 6 is a double-stranded RNA virus that has been extensively studied as a model organism. Here we describe structure determination of I center dot 6 major capsid protein P1. The protein crystallized in base centered orthorhombic space group C222(1). Matthews's coefficient indicated that the crystals contain from four to seven P1 subunits in the crystallographic asymmetric unit. The self-rotation function had shown presence of fivefold axes of non-crystallographic symmetry in the crystals. Thus, electron density map corresponding to a P1 pentamer was excised from a previously determined cryoEM reconstruction of the I center dot 6 procapsid at 7 resolution and used as a model for molecular replacement. The phases for reflections at higher than 7 resolution were obtained by phase extension employing the fivefold non-crystallographic symmetry present in the crystal. The averaged 3.6 -resolution electron density map was of sufficient quality to allow model building.
Displayed: 3/11/2024 12:26