J
2013
Using cryoEM Reconstruction and Phase Extension to Determine Crystal Structure of Bacteriophage I center dot 6 Major Capsid Protein
NĚMEČEK, Daniel, Pavel PLEVKA and Evzen BOURA
Basic information
Original name
Using cryoEM Reconstruction and Phase Extension to Determine Crystal Structure of Bacteriophage I center dot 6 Major Capsid Protein
Authors
NĚMEČEK, Daniel (203 Czech Republic, guarantor, belonging to the institution),
Pavel PLEVKA (203 Czech Republic, belonging to the institution) and Evzen BOURA (203 Czech Republic)
Edition
The Protein Journal, NEW YORK, SPRINGER, 2013, 1572-3887
Other information
Type of outcome
Článek v odborném periodiku
Field of Study
10600 1.6 Biological sciences
Country of publisher
United States of America
Confidentiality degree
není předmětem státního či obchodního tajemství
Impact factor
Impact factor: 1.039
RIV identification code
RIV/00216224:14740/13:00072307
Organization unit
Central European Institute of Technology
Keywords in English
Molecular replacement; Cryo-electron microscopy; Non-crystallographic symmetry; Virus capsid protein; Phase extension
Tags
International impact, Reviewed
V originále
Bacteriophage I center dot 6 is a double-stranded RNA virus that has been extensively studied as a model organism. Here we describe structure determination of I center dot 6 major capsid protein P1. The protein crystallized in base centered orthorhombic space group C222(1). Matthews's coefficient indicated that the crystals contain from four to seven P1 subunits in the crystallographic asymmetric unit. The self-rotation function had shown presence of fivefold axes of non-crystallographic symmetry in the crystals. Thus, electron density map corresponding to a P1 pentamer was excised from a previously determined cryoEM reconstruction of the I center dot 6 procapsid at 7 resolution and used as a model for molecular replacement. The phases for reflections at higher than 7 resolution were obtained by phase extension employing the fivefold non-crystallographic symmetry present in the crystal. The averaged 3.6 -resolution electron density map was of sufficient quality to allow model building.
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