J
2013
High-Resolution Insight into G-Overhang Architecture
HAENSEL, Robert, Frank LOEHR, Lukáš TRANTÍREK and Volker DOETSCH
Basic information
Original name
High-Resolution Insight into G-Overhang Architecture
Authors
HAENSEL, Robert (276 Germany), Frank LOEHR (276 Germany),
Lukáš TRANTÍREK (203 Czech Republic, guarantor, belonging to the institution) and Volker DOETSCH (276 Germany)
Edition
Journal of the American Chemical Society, Washington, American Chemical Society, 2013, 0002-7863
Other information
Type of outcome
Článek v odborném periodiku
Field of Study
10600 1.6 Biological sciences
Country of publisher
United States of America
Confidentiality degree
není předmětem státního či obchodního tajemství
Impact factor
Impact factor: 11.444
RIV identification code
RIV/00216224:14740/13:00072647
Organization unit
Central European Institute of Technology
Keywords in English
HUMAN TELOMERIC DNA; INTRAMOLECULAR G-QUADRUPLEX; K+ SOLUTION; NMR-SPECTROSCOPY; SMALL-MOLECULE; HUMAN CANCER; PULSED EPR; STABILITY; SEQUENCE; CONFORMATIONS
Tags
International impact, Reviewed
V originále
NMR and fluorescence spectroscopy were used to address the effect of intracellular molecular crowding and related hydration on a model telomeric G-quadruplex (G4) DNA structure (d(AG(3)(TTAGGG)(3))). d(AG(3)(TTAGGG)(3)) prevalently adopted the hybrid-1 conformation in vivo, ex vivo, and in dilute potassium-based solution, while it formed the parallel propeller fold in water-depleted potassium-based solution, a commonly used model system for studying intracellular molecular crowding. The dilute potassium-based solution appeared to imitate the properties of the cellular environment required for d(AG(3)(TTAGGG)(3)) folding under in vivo and ex vivo conditions. High-resolution NMR investigations of site-specifically N-15-labeled G4 units in native-like single-stranded telomeric DNA revealed that the 3'-terminal and internal G4 unit predominantly coexist in 2-tetrad antiparallel basket and hybrid-2 structures that are arranged in "beads-on-a-string"-like fashion. Our data provide the first high-resolution insight into the telomeric G-overhang architecture under essentially physiological conditions and identify the 2-tetrad antiparallel basket and hybrid-2 topologies as the structural targets for the development of telomere-specific G4 ligands.
Links
ED1.1.00/02.0068, research and development project | Name: CEITEC - central european institute of technology |
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