J 2013

High-Resolution Insight into G-Overhang Architecture

HAENSEL, Robert, Frank LOEHR, Lukáš TRANTÍREK and Volker DOETSCH

Basic information

Original name

High-Resolution Insight into G-Overhang Architecture

Authors

HAENSEL, Robert (276 Germany), Frank LOEHR (276 Germany), Lukáš TRANTÍREK (203 Czech Republic, guarantor, belonging to the institution) and Volker DOETSCH (276 Germany)

Edition

Journal of the American Chemical Society, Washington, American Chemical Society, 2013, 0002-7863

Other information

Language

English

Type of outcome

Článek v odborném periodiku

Field of Study

10600 1.6 Biological sciences

Country of publisher

United States of America

Confidentiality degree

není předmětem státního či obchodního tajemství

Impact factor

Impact factor: 11.444

RIV identification code

RIV/00216224:14740/13:00072647

Organization unit

Central European Institute of Technology

DOI

http://dx.doi.org/10.1021/ja312403b

UT WoS

000315373000062

Keywords in English

HUMAN TELOMERIC DNA; INTRAMOLECULAR G-QUADRUPLEX; K+ SOLUTION; NMR-SPECTROSCOPY; SMALL-MOLECULE; HUMAN CANCER; PULSED EPR; STABILITY; SEQUENCE; CONFORMATIONS

Tags

ok, rivok

Tags

International impact, Reviewed
Změněno: 20/3/2014 08:25, Olga Křížová

Abstract

V originále

NMR and fluorescence spectroscopy were used to address the effect of intracellular molecular crowding and related hydration on a model telomeric G-quadruplex (G4) DNA structure (d(AG(3)(TTAGGG)(3))). d(AG(3)(TTAGGG)(3)) prevalently adopted the hybrid-1 conformation in vivo, ex vivo, and in dilute potassium-based solution, while it formed the parallel propeller fold in water-depleted potassium-based solution, a commonly used model system for studying intracellular molecular crowding. The dilute potassium-based solution appeared to imitate the properties of the cellular environment required for d(AG(3)(TTAGGG)(3)) folding under in vivo and ex vivo conditions. High-resolution NMR investigations of site-specifically N-15-labeled G4 units in native-like single-stranded telomeric DNA revealed that the 3'-terminal and internal G4 unit predominantly coexist in 2-tetrad antiparallel basket and hybrid-2 structures that are arranged in "beads-on-a-string"-like fashion. Our data provide the first high-resolution insight into the telomeric G-overhang architecture under essentially physiological conditions and identify the 2-tetrad antiparallel basket and hybrid-2 topologies as the structural targets for the development of telomere-specific G4 ligands.

Links

ED1.1.00/02.0068, research and development project
Name: CEITEC - central european institute of technology
Displayed: 10/11/2024 12:38