On Proper Simulation of Phenomena Influencing Image Formation
in Fluorescence Microscopy

D 2014

On Proper Simulation of Phenomena Influencing Image Formation in Fluorescence Microscopy

SVOBODA, David, Vladimír ULMAN, Luděk MATYSKA, Martin MAŠKA, Ján BELLA et. al.

Basic information

Original name

On Proper Simulation of Phenomena Influencing Image Formation in Fluorescence Microscopy

Authors

SVOBODA, David (203 Czech Republic, guarantor, belonging to the institution), Vladimír ULMAN (203 Czech Republic, belonging to the institution), Luděk MATYSKA (203 Czech Republic, belonging to the institution), Martin MAŠKA (203 Czech Republic, belonging to the institution), Ján BELLA (703 Slovakia, belonging to the institution) and Stanislav STEJSKAL (203 Czech Republic, belonging to the institution)

Edition

Neuveden, 2014 IEEE International Conference on Image Processing, p. 3944-3948, 5 pp. 2014

Publisher

IEEE Signal Processing Society

Other information

Language

English

Type of outcome

Stať ve sborníku

Field of Study

20200 2.2 Electrical engineering, Electronic engineering, Information engineering

Country of publisher

United States of America

Confidentiality degree

není předmětem státního či obchodního tajemství

Publication form

storage medium (CD, DVD, flash disk)

References:

URL

RIV identification code

RIV/00216224:14330/14:00073637

Organization unit

Faculty of Informatics

ISBN

978-1-4799-5750-7

DOI

http://dx.doi.org/10.1109/ICIP.2014.7025801

UT WoS

000370063604023

Keywords in English

Simulation; Biomedical imaging; Fluorescence microscopy; Photobleaching; Uneven illumination

Abstract

V originále

The simulation plays an important role in biomedical image analysis as it can inherently provide large collections of image data with absolute ground truth. Compared to real image data typically annotated by some expert, the computer generated data still lacks the authenticity due to the simplifications of various natural phenomena. In this paper, we focus on simulating the photobleaching effect and the uneven illumination, being simplified or even omitted from the majority of present simulation toolkits, to considerably improve the authenticity of computer generated data.

Links

CZ.1.07/2.3.00/30.0030, interní kód MU

Name: Rozvoj lidských zdrojů pro oblast buněčné biologie

Investor: Ministry of Education, Youth and Sports of the CR, 2.3 Human resources in research and development

EE2.3.30.0009, research and development project

Name: Zaměstnáním čerstvých absolventů doktorského studia k vědecké excelenci

GA14-22461S, research and development project

Name: Vývoj a studium metod pro kvantifikaci živých buněk (Acronym: Live Cell Quantification)

Investor: Czech Science Foundation

Citovat

SVOBODA, David, Vladimír ULMAN, Luděk MATYSKA, Martin MAŠKA, Ján BELLA and Stanislav STEJSKAL. On Proper Simulation of Phenomena Influencing Image Formation in Fluorescence Microscopy. In 2014 IEEE International Conference on Image Processing. Neuveden: IEEE Signal Processing Society, 2014, p. 3944-3948. ISBN 978-1-4799-5750-7. Available from: https://dx.doi.org/10.1109/ICIP.2014.7025801.

@inproceedings{1183286,
   author = {Svoboda, David and Ulman, Vladimír and Matyska, Luděk and Maška, Martin and Bella, Ján and Stejskal, Stanislav},
   address = {Neuveden},
   booktitle = {2014 IEEE International Conference on Image Processing},
   doi = {http://dx.doi.org/10.1109/ICIP.2014.7025801},
   keywords = {Simulation; Biomedical imaging; Fluorescence microscopy; Photobleaching; Uneven illumination},
   howpublished = {paměťový nosič},
   language = {eng},
   location = {Neuveden},
   isbn = {978-1-4799-5750-7},
   pages = {3944-3948},
   publisher = {IEEE Signal Processing Society},
   title = {On Proper Simulation of Phenomena Influencing Image Formation in Fluorescence Microscopy},
   url = {http://dx.doi.org/10.1109/ICIP.2014.7025801},
   year = {2014}
}

TY  - JOUR
ID  - 1183286
AU  - Svoboda, David - Ulman, Vladimír - Matyska, Luděk - Maška, Martin - Bella, Ján - Stejskal, Stanislav
PY  - 2014
TI  - On Proper Simulation of Phenomena Influencing Image Formation in Fluorescence Microscopy
PB  - IEEE Signal Processing Society
CY  - Neuveden
SN  - 9781479957507
KW  - Simulation
KW  - Biomedical imaging
KW  - Fluorescence microscopy
KW  - Photobleaching
KW  - Uneven illumination
UR  - http://dx.doi.org/10.1109/ICIP.2014.7025801
N2  - The simulation plays an important role in biomedical image analysis as it can inherently provide large collections of image data with absolute ground truth. Compared to real image data typically annotated by some expert, the computer generated data still lacks the authenticity due to the simplifications of various natural phenomena. In this paper, we focus on simulating the photobleaching effect and the uneven illumination, being simplified or even omitted from the majority of present simulation toolkits, to considerably improve the authenticity of computer generated data.
ER  -

SVOBODA, David, Vladimír ULMAN, Luděk MATYSKA, Martin MAŠKA, Ján BELLA and Stanislav STEJSKAL. On Proper Simulation of Phenomena Influencing Image Formation in Fluorescence Microscopy. In \textit{2014 IEEE International Conference on Image Processing}. Neuveden: IEEE Signal Processing Society, 2014, p.~3944-3948. ISBN~978-1-4799-5750-7. Available from: https://dx.doi.org/10.1109/ICIP.2014.7025801.

Detailed Information on Publication Record