KOZLÍKOVÁ, Barbora, Eva ŠEBESTOVÁ, Vilém ŠUSTR, Jan BREZOVSKÝ, Ondřej STRNAD, Lukáš DANIEL, David BEDNÁŘ, Antonín PAVELKA, Martin MANAK, Martin BEZDĚKA, Petr BENEŠ, Matúš KOTRY, Artur Wiktor GORA, Jiří DAMBORSKÝ and Jiří SOCHOR. CAVER Analyst 1.0: Graphic tool for interactive visualization and analysis of tunnels and channels in protein structures. Bioinformatics, Oxford University Press, 2014, vol. 30, No 18, p. 2684-2685. ISSN 1367-4803. doi:10.1093/bioinformatics/btu364.
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Basic information
Original name CAVER Analyst 1.0: Graphic tool for interactive visualization and analysis of tunnels and channels in protein structures
Name in Czech CAVER Analyst 1.0: Grafický nástroj pro interaktivní vizualizaci a analýzu tunelů a kanálů v proteinech
Authors KOZLÍKOVÁ, Barbora (203 Czech Republic, belonging to the institution), Eva ŠEBESTOVÁ (203 Czech Republic, belonging to the institution), Vilém ŠUSTR (203 Czech Republic, belonging to the institution), Jan BREZOVSKÝ (203 Czech Republic, belonging to the institution), Ondřej STRNAD (203 Czech Republic, belonging to the institution), Lukáš DANIEL (203 Czech Republic, belonging to the institution), David BEDNÁŘ (203 Czech Republic, belonging to the institution), Antonín PAVELKA (203 Czech Republic, belonging to the institution), Martin MANAK (203 Czech Republic), Martin BEZDĚKA (203 Czech Republic, belonging to the institution), Petr BENEŠ (203 Czech Republic, belonging to the institution), Matúš KOTRY (703 Slovakia, belonging to the institution), Artur Wiktor GORA (616 Poland, belonging to the institution), Jiří DAMBORSKÝ (203 Czech Republic, belonging to the institution) and Jiří SOCHOR (203 Czech Republic, guarantor, belonging to the institution).
Edition Bioinformatics, Oxford University Press, 2014, 1367-4803.
Other information
Original language English
Type of outcome Article in a journal
Field of Study 10201 Computer sciences, information science, bioinformatics
Country of publisher United Kingdom of Great Britain and Northern Ireland
Confidentiality degree is not subject to a state or trade secret
Impact factor Impact factor: 4.981
RIV identification code RIV/00216224:14330/14:00073649
Organization unit Faculty of Informatics
Doi http://dx.doi.org/10.1093/bioinformatics/btu364
UT WoS 000342913000027
Keywords in English protein; visualization; tunnel; cavity
Tags AKR
Tags International impact, Reviewed
Changed by Changed by: prof. Ing. Jiří Sochor, CSc., učo 2446. Changed: 21/6/2015 20:05.
Abstract
The transport of ligands, ions or solvent molecules into proteins with buried binding sites or through the membrane is enabled by protein tunnels and channels. CAVER Analyst is a software tool for calculation, analysis and real-time visualization of access tunnels and channels in static and dynamic protein structures. It provides an intuitive graphic user interface for setting up the calculation and interactive exploration of identified tunnels/channels and their characteristics.
Links
GAP202/10/1435, research and development projectName: Analýza a vizualizace proteinových struktur
Investor: Czech Science Foundation, Standard Projects
LC06008, research and development projectName: Centrum počítačové grafiky (Acronym: CPG)
Investor: Ministry of Education, Youth and Sports of the CR, Basic Research Center
MUNI/A/0915/2013, internal MU codeName: Výzkum FI ve vybraných oblastech aplikované informatiky (Acronym: FI_Apl_Inf_2014)
Investor: Masaryk University, Grant Agency of Masaryk University, Category A
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