Cardamine hirsuta: a versatile genetic system for comparative
studies

J 2014

Cardamine hirsuta: a versatile genetic system for comparative studies

HAY, Angela S., Bjorn PIEPER, Elizabeth COOKE, Terezie MANDÁKOVÁ, Maria CARTOLANO et. al.

Basic information

Original name

Cardamine hirsuta: a versatile genetic system for comparative studies

Authors

HAY, Angela S. (276 Germany), Bjorn PIEPER (826 United Kingdom of Great Britain and Northern Ireland), Elizabeth COOKE (826 United Kingdom of Great Britain and Northern Ireland), Terezie MANDÁKOVÁ (203 Czech Republic, belonging to the institution), Maria CARTOLANO (276 Germany), Alexander D. TATTERSALL (826 United Kingdom of Great Britain and Northern Ireland), Raffaele D. IOIO (276 Germany), Simon J. MCGOWAN (826 United Kingdom of Great Britain and Northern Ireland), Michalis BARKOULAS (826 United Kingdom of Great Britain and Northern Ireland), Carla GALINHA (826 United Kingdom of Great Britain and Northern Ireland), Madlen I. RAST (276 Germany), Hugo HOFHUIS (276 Germany), Christiane THEN (724 Spain), Jörg PLIESKE (276 Germany), Martin GANAL (276 Germany), Richard MOTT (826 United Kingdom of Great Britain and Northern Ireland), Jaime F. MARTINEZ- GARCIA (724 Spain), Mark A. CARINE (826 United Kingdom of Great Britain and Northern Ireland), Robert W. SCOTLAND (826 United Kingdom of Great Britain and Northern Ireland), Xiangchao GAN (276 Germany), Dmitry A. FILATOV (826 United Kingdom of Great Britain and Northern Ireland), Martin LYSÁK (203 Czech Republic, guarantor, belonging to the institution) and Miltos TSIANTIS (276 Germany)

Edition

The Plant Journal, Hoboken (USA), Blackwell Science, 2014, 0960-7412

Other information

Language

English

Type of outcome

Článek v odborném periodiku

Field of Study

Genetics and molecular biology

Country of publisher

United States of America

Confidentiality degree

není předmětem státního či obchodního tajemství

References:

URL

Impact factor

Impact factor: 5.972

RIV identification code

RIV/00216224:14740/14:00074132

Organization unit

Central European Institute of Technology

DOI

http://dx.doi.org/10.1111/tpj.12447

UT WoS

000333360800001

Keywords in English

ARABIDOPSIS-THALIANA; SHADE AVOIDANCE; ARABIS-ALPINA; GENOME SIZE; BRASSICACEAE; EVOLUTION; DIVERSITY; EXPRESSION; DROSOPHILA; PATTERNS

Abstract

V originále

A major goal in biology is to identify the genetic basis for phenotypic diversity. This goal underpins research in areas as diverse as evolutionary biology, plant breeding and human genetics. A limitation for this research is no longer the availability of sequence information but the development of functional genetic tools to understand the link between changes in sequence and phenotype. Here we describe Cardamine hirsuta, a close relative of the reference plant Arabidopsis thaliana, as an experimental system in which genetic and transgenic approaches can be deployed effectively for comparative studies. We present high-resolution genetic and cytogenetic maps for C.hirsuta and show that the genome structure of C.hirsuta closely resembles the eight chromosomes of the ancestral crucifer karyotype and provides a good reference point for comparative genome studies across the Brassicaceae. We compared morphological and physiological traits between C.hirsuta and A.thaliana and analysed natural variation in stamen number in which lateral stamen loss is a species characteristic of C.hirsuta. We constructed a set of recombinant inbred lines and detected eight quantitative trait loci that can explain stamen number variation in this population. We found clear phylogeographic structure to the genetic variation in C.hirsuta, thus providing a context within which to address questions about evolutionary changes that link genotype with phenotype and the environment.

Links

GAP501/10/1014, research and development project

Name: Evoluce genomu alopolyploidních řeřišnic (Cardamine) rozdílného fylogenetického stáří

Investor: Czech Science Foundation

Citovat

HAY, Angela S., Bjorn PIEPER, Elizabeth COOKE, Terezie MANDÁKOVÁ, Maria CARTOLANO, Alexander D. TATTERSALL, Raffaele D. IOIO, Simon J. MCGOWAN, Michalis BARKOULAS, Carla GALINHA, Madlen I. RAST, Hugo HOFHUIS, Christiane THEN, Jörg PLIESKE, Martin GANAL, Richard MOTT, Jaime F. MARTINEZ- GARCIA, Mark A. CARINE, Robert W. SCOTLAND, Xiangchao GAN, Dmitry A. FILATOV, Martin LYSÁK and Miltos TSIANTIS. Cardamine hirsuta: a versatile genetic system for comparative studies. The Plant Journal. Hoboken (USA): Blackwell Science, 2014, vol. 78, No 1, p. 1-15. ISSN 0960-7412. Available from: https://dx.doi.org/10.1111/tpj.12447.

@article{1210520,
   author = {Hay, Angela S. and Pieper, Bjorn and Cooke, Elizabeth and Mandáková, Terezie and Cartolano, Maria and Tattersall, Alexander D. and Ioio, Raffaele D. and McGowan, Simon J. and Barkoulas, Michalis and Galinha, Carla and Rast, Madlen I. and Hofhuis, Hugo and Then, Christiane and Plieske, Jörg and Ganal, Martin and Mott, Richard and Martinezand Garcia, Jaime F. and Carine, Mark A. and Scotland, Robert W. and Gan, Xiangchao and Filatov, Dmitry A. and Lysák, Martin and Tsiantis, Miltos},
   article_location = {Hoboken (USA)},
   article_number = {1},
   doi = {http://dx.doi.org/10.1111/tpj.12447},
   keywords = {ARABIDOPSIS-THALIANA; SHADE AVOIDANCE; ARABIS-ALPINA; GENOME SIZE; BRASSICACEAE; EVOLUTION; DIVERSITY; EXPRESSION; DROSOPHILA; PATTERNS},
   language = {eng},
   issn = {0960-7412},
   journal = {The Plant Journal},
   title = {Cardamine hirsuta: a versatile genetic system for comparative studies},
   url = {http://onlinelibrary.wiley.com/doi/10.1111/tpj.12447/abstract},
   volume = {78},
   year = {2014}
}

TY  - JOUR
ID  - 1210520
AU  - Hay, Angela S. - Pieper, Bjorn - Cooke, Elizabeth - Mandáková, Terezie - Cartolano, Maria - Tattersall, Alexander D. - Ioio, Raffaele D. - McGowan, Simon J. - Barkoulas, Michalis - Galinha, Carla - Rast, Madlen I. - Hofhuis, Hugo - Then, Christiane - Plieske, Jörg - Ganal, Martin - Mott, Richard - Martinez- Garcia, Jaime F. - Carine, Mark A. - Scotland, Robert W. - Gan, Xiangchao - Filatov, Dmitry A. - Lysák, Martin - Tsiantis, Miltos
PY  - 2014
TI  - Cardamine hirsuta: a versatile genetic system for comparative studies
JF  - The Plant Journal
VL  - 78
IS  - 1
SP  - 1-15
EP  - 1-15
PB  - Blackwell Science
SN  - 09607412
KW  - ARABIDOPSIS-THALIANA
KW  - SHADE AVOIDANCE
KW  - ARABIS-ALPINA
KW  - GENOME SIZE
KW  - BRASSICACEAE
KW  - EVOLUTION
KW  - DIVERSITY
KW  - EXPRESSION
KW  - DROSOPHILA
KW  - PATTERNS
UR  - http://onlinelibrary.wiley.com/doi/10.1111/tpj.12447/abstract
L2  - http://onlinelibrary.wiley.com/doi/10.1111/tpj.12447/abstract
N2  - A major goal in biology is to identify the genetic basis for phenotypic diversity. This goal underpins research in areas as diverse as evolutionary biology, plant breeding and human genetics. A limitation for this research is no longer the availability of sequence information but the development of functional genetic tools to understand the link between changes in sequence and phenotype. Here we describe Cardamine hirsuta, a close relative of the reference plant Arabidopsis thaliana, as an experimental system in which genetic and transgenic approaches can be deployed effectively for comparative studies. We present high-resolution genetic and cytogenetic maps for C.hirsuta and show that the genome structure of C.hirsuta closely resembles the eight chromosomes of the ancestral crucifer karyotype and provides a good reference point for comparative genome studies across the Brassicaceae. We compared morphological and physiological traits between C.hirsuta and A.thaliana and analysed natural variation in stamen number in which lateral stamen loss is a species characteristic of C.hirsuta. We constructed a set of recombinant inbred lines and detected eight quantitative trait loci that can explain stamen number variation in this population. We found clear phylogeographic structure to the genetic variation in C.hirsuta, thus providing a context within which to address questions about evolutionary changes that link genotype with phenotype and the environment.
ER  -

HAY, Angela S., Bjorn PIEPER, Elizabeth COOKE, Terezie MANDÁKOVÁ, Maria CARTOLANO, Alexander D. TATTERSALL, Raffaele D. IOIO, Simon J. MCGOWAN, Michalis BARKOULAS, Carla GALINHA, Madlen I. RAST, Hugo HOFHUIS, Christiane THEN, Jörg PLIESKE, Martin GANAL, Richard MOTT, Jaime F. MARTINEZ- GARCIA, Mark A. CARINE, Robert W. SCOTLAND, Xiangchao GAN, Dmitry A. FILATOV, Martin LYSÁK and Miltos TSIANTIS. Cardamine hirsuta: a versatile genetic system for comparative studies. \textit{The Plant Journal}. Hoboken (USA): Blackwell Science, 2014, vol.~78, No~1, p.~1-15. ISSN~0960-7412. Available from: https://dx.doi.org/10.1111/tpj.12447.

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