D 2015

On Proper Simulation of Chromatin Structure in Static Images As Well As in Time-Lapse Sequences in Fluorescence Microscopy

SVOBODA, David, Vladimír ULMAN and Igor PETERLÍK

Basic information

Original name

On Proper Simulation of Chromatin Structure in Static Images As Well As in Time-Lapse Sequences in Fluorescence Microscopy

Authors

SVOBODA, David (203 Czech Republic, guarantor, belonging to the institution), Vladimír ULMAN (203 Czech Republic, belonging to the institution) and Igor PETERLÍK (703 Slovakia, belonging to the institution)

Edition

Stoughton (WI, USA), Proceedings of 2015 IEEE International Symposium on Biomedical Imaging, p. 712-716, 5 pp. 2015

Publisher

Engineering in Medicine and Biology Society

Other information

Language

English

Type of outcome

Stať ve sborníku

Field of Study

10201 Computer sciences, information science, bioinformatics

Country of publisher

United States of America

Confidentiality degree

není předmětem státního či obchodního tajemství

Publication form

storage medium (CD, DVD, flash disk)

RIV identification code

RIV/00216224:14330/15:00080650

Organization unit

Faculty of Informatics

ISBN

978-1-4799-2374-8

ISSN

DOI

http://dx.doi.org/10.1109/ISBI.2015.7163972

UT WoS

000380546000171

Keywords in English

Simulation; Synthetic cell; Chromatin structure; Nucleus deformation; Linear elasticity; FEM

Tags

CBIA, cbia-web, firank_B

Tags

International impact, Reviewed
Změněno: 16/7/2019 11:11, doc. RNDr. David Svoboda, Ph.D.

Abstract

V originále

In fluorescence microscopy, where the benchmark datasets for validating the various image analysis methods are difficult to obtain, a great demand is either for manually annotated real image data or for computer generated ones. In the last two decades, the latter case has become more and more accessible due to an increasing computer capabilities. However, the development of elaborate models, especially in the field of fluorescence microscopy imaging, is less progressive. In this paper, we propose a novel approach, based on well established concepts, to properly imitate the structure of chromatin inside the cell nucleus as well as its dynamics. The performance of the approach was quantitatively evaluated against the real data. The results show that the produced images are sufficiently plausible and visually resemble their real counter parts, both for fixed and living cells.

Links

GA14-22461S, research and development project
Name: Vývoj a studium metod pro kvantifikaci živých buněk (Acronym: Live Cell Quantification)
Investor: Czech Science Foundation
Displayed: 9/11/2024 01:16