Terra incognita – sequencing projects of monogeneans parasites

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Terra incognita – sequencing projects of monogeneans parasites

VOREL, Jiří, Dagmar JIRSOVÁ, Jana ILGOVÁ, Pavel ROUDNICKÝ, Hynek STRNAD et. al.

Basic information

Original name

Terra incognita – sequencing projects of monogeneans parasites

Authors

VOREL, Jiří (203 Czech Republic, belonging to the institution), Dagmar JIRSOVÁ (203 Czech Republic), Jana ILGOVÁ (703 Slovakia), Pavel ROUDNICKÝ (203 Czech Republic), Hynek STRNAD (203 Czech Republic), Lucie JEDLIČKOVÁ (203 Czech Republic), Hana DVOŘÁKOVÁ (203 Czech Republic), Karolína SKIPALOVÁ (203 Czech Republic), Libor MIKEŠ (203 Czech Republic), Petr BROŽ (203 Czech Republic), Roman LEONTOVYČ (203 Czech Republic), Ewa DZIKA (616 Poland), Božena KOUBKOVÁ (203 Czech Republic), Milan GELNAR (203 Czech Republic) and Martin KAŠNÝ (203 Czech Republic)

Edition

Grid computing workshop, 2015

Other information

Language

English

Type of outcome

Prezentace na konferencích

Field of Study

10600 1.6 Biological sciences

Country of publisher

Czech Republic

Confidentiality degree

není předmětem státního či obchodního tajemství

References:

URL

RIV identification code

RIV/00216224:14310/15:00094523

Organization unit

Faculty of Science

Keywords (in Czech)

NGS, Monogenea, genom, transkriptom

Keywords in English

NGS; Monogenea; genome; transcriptome

Změněno: 16/2/2018 14:49, Mgr. Jiří Vorel, Ph.D.

Abstract

V originále

Parasitic monogeneans are important blood sucking fish ectoparasites. Their presence can lead to significant losses in fish stocks. Our understanding to the biological processes of monogeneans is based also on detailed knowledge of their molecular biology and biochemistry. By using the modern sequencing methods and computer databases (genomic, transcriptomic and proteomic) we can now faster and more accurately identify numerous sets of protein molecules which are essential for life of these parasites. From a large group of Monogenea (assume the existence up to 25 000 species). Only one species has was deeply sequenced – genome of Gyrodactylus salaris (Monogenea: Gyrodactylidae) from 2014. We would like to change this situation and therefore we adopted Eudiplozoon nipponicum (Monogenea: Diplozoidae) as a model organism and started some preliminary analyses leaded to generation of E. nipponicum genome, transcriptome and proteome databases.

Links

GBP505/12/G112, research and development project

Name: ECIP - Evropské centrum ichtyoparazitologie

Investor: Czech Science Foundation

Citovat

VOREL, Jiří, Dagmar JIRSOVÁ, Jana ILGOVÁ, Pavel ROUDNICKÝ, Hynek STRNAD, Lucie JEDLIČKOVÁ, Hana DVOŘÁKOVÁ, Karolína SKIPALOVÁ, Libor MIKEŠ, Petr BROŽ, Roman LEONTOVYČ, Ewa DZIKA, Božena KOUBKOVÁ, Milan GELNAR and Martin KAŠNÝ. Terra incognita – sequencing projects of monogeneans parasites. In Grid computing workshop. 2015.

@proceedings{1319619,
   author = {Vorel, Jiří and Jirsová, Dagmar and Ilgová, Jana and Roudnický, Pavel and Strnad, Hynek and Jedličková, Lucie and Dvořáková, Hana and Skipalová, Karolína and Mikeš, Libor and Brož, Petr and Leontovyč, Roman and Dzika, Ewa and Koubková, Božena and Gelnar, Milan and Kašný, Martin},
   booktitle = {Grid computing workshop},
   keywords = {NGS; Monogenea; genome; transcriptome},
   language = {eng},
   title = {Terra incognita – sequencing projects of monogeneans parasites},
   url = {http://metavo.metacentrum.cz/cs/seminars/seminar2015/index.html},
   year = {2015}
}

TY  - CONF
ID  - 1319619
AU  - Vorel, Jiří - Jirsová, Dagmar - Ilgová, Jana - Roudnický, Pavel - Strnad, Hynek - Jedličková, Lucie - Dvořáková, Hana - Skipalová, Karolína - Mikeš, Libor - Brož, Petr - Leontovyč, Roman - Dzika, Ewa - Koubková, Božena - Gelnar, Milan - Kašný, Martin
PY  - 2015
TI  - Terra incognita – sequencing projects of monogeneans parasites
KW  - NGS
KW  - Monogenea
KW  - genome
KW  - transcriptome
UR  - http://metavo.metacentrum.cz/cs/seminars/seminar2015/index.html
N2  - Parasitic monogeneans are important blood sucking fish ectoparasites. Their presence can lead to significant losses in fish stocks. Our understanding to the biological processes of monogeneans is based also on detailed knowledge of their molecular biology and biochemistry. By using the modern sequencing methods and computer databases (genomic, transcriptomic and proteomic) we can now faster and more accurately identify numerous sets of protein molecules which are essential for life of these parasites. From a large group of Monogenea (assume the existence up to 25 000 species). Only one species has was deeply sequenced – genome of Gyrodactylus salaris (Monogenea: Gyrodactylidae) from 2014. We would like to change this situation and therefore we adopted Eudiplozoon nipponicum (Monogenea: Diplozoidae) as a model organism and started some preliminary analyses leaded to generation of E. nipponicum genome, transcriptome and proteome databases.
ER  -

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