| WILLING, Eva-Maria, Vimal RAWAT, Terezie MANDÁKOVÁ, Florian MAUMUS, Geo Velikkakam JAMES, Karl J. V. NORDSTROM, Claude BECKER, Norman WARTHMANN, Claudia CHICA, Bogna SZARZYNSKA, Matthias ZYTNICKI, Maria C. ALBANI, Christiane KIEFER, Sara BERGONZI, Loren CASTAINGS, Julieta L. MATEOS, Markus C. BERNS, Nora BUJDOSO, Thomas PIOFCZYK, Laura DE LORENZO, Cristina BARRERO-SICILIA, Isabel MATEOS, Mathieu PIEDNOEL, Joerg HAGMANN, Romy CHEN-MIN-TAO, Raquel IGLESIAS-FERNANDEZ, Stephan C. SCHUSTER, Carlos ALONSO-BLANCO, Francois ROUDIER, Pilar CARBONERO, Javier PAZ-ARES, Seth J. DAVIS, Aleš PEČINKA, Hadi QUESNEVILLE, Vincent COLOT, Martin LYSÁK, Detlef WEIGEL, George COUPLAND and Korbinian SCHNEEBERGER. Genome expansion of Arabis alpina linked with retrotransposition and reduced symmetric DNA methylation. NATURE PLANTS. LONDON: NATURE PUBLISHING GROUP, 2015, vol. 1, No 2, p. 1-7. ISSN 2055-026X. Available from: https://dx.doi.org/10.1038/NPLANTS.2014.23. |
Other formats:
BibTeX
LaTeX
RIS
@article{1323753,
author = {Willing, EvaandMaria and Rawat, Vimal and Mandáková, Terezie and Maumus, Florian and James, Geo Velikkakam and Nordstrom, Karl J. V. and Becker, Claude and Warthmann, Norman and Chica, Claudia and Szarzynska, Bogna and Zytnicki, Matthias and Albani, Maria C. and Kiefer, Christiane and Bergonzi, Sara and Castaings, Loren and Mateos, Julieta L. and Berns, Markus C. and Bujdoso, Nora and Piofczyk, Thomas and de Lorenzo, Laura and BarreroandSicilia, Cristina and Mateos, Isabel and Piednoel, Mathieu and Hagmann, Joerg and ChenandMinandTao, Romy and IglesiasandFernandez, Raquel and Schuster, Stephan C. and AlonsoandBlanco, Carlos and Roudier, Francois and Carbonero, Pilar and PazandAres, Javier and Davis, Seth J. and Pečinka, Aleš and Quesneville, Hadi and Colot, Vincent and Lysák, Martin and Weigel, Detlef and Coupland, George and Schneeberger, Korbinian},
article_location = {LONDON},
article_number = {2},
doi = {http://dx.doi.org/10.1038/NPLANTS.2014.23},
keywords = {ARABIDOPSIS-THALIANA; PROVIDES INSIGHT; EVOLUTION; LYRATA; DIVERGENCE; SEQUENCE; REVEALS; SIZE},
language = {eng},
issn = {2055-026X},
journal = {NATURE PLANTS},
title = {Genome expansion of Arabis alpina linked with retrotransposition and reduced symmetric DNA methylation},
url = {http://www.nature.com/articles/nplants201423},
volume = {1},
year = {2015}
}
TY - JOUR
ID - 1323753
AU - Willing, Eva-Maria - Rawat, Vimal - Mandáková, Terezie - Maumus, Florian - James, Geo Velikkakam - Nordstrom, Karl J. V. - Becker, Claude - Warthmann, Norman - Chica, Claudia - Szarzynska, Bogna - Zytnicki, Matthias - Albani, Maria C. - Kiefer, Christiane - Bergonzi, Sara - Castaings, Loren - Mateos, Julieta L. - Berns, Markus C. - Bujdoso, Nora - Piofczyk, Thomas - de Lorenzo, Laura - Barrero-Sicilia, Cristina - Mateos, Isabel - Piednoel, Mathieu - Hagmann, Joerg - Chen-Min-Tao, Romy - Iglesias-Fernandez, Raquel - Schuster, Stephan C. - Alonso-Blanco, Carlos - Roudier, Francois - Carbonero, Pilar - Paz-Ares, Javier - Davis, Seth J. - Pečinka, Aleš - Quesneville, Hadi - Colot, Vincent - Lysák, Martin - Weigel, Detlef - Coupland, George - Schneeberger, Korbinian
PY - 2015
TI - Genome expansion of Arabis alpina linked with retrotransposition and reduced symmetric DNA methylation
JF - NATURE PLANTS
VL - 1
IS - 2
SP - 1-7
EP - 1-7
PB - NATURE PUBLISHING GROUP
SN - 2055026X
KW - ARABIDOPSIS-THALIANA
KW - PROVIDES INSIGHT
KW - EVOLUTION
KW - LYRATA
KW - DIVERGENCE
KW - SEQUENCE
KW - REVEALS
KW - SIZE
UR - http://www.nature.com/articles/nplants201423
L2 - http://www.nature.com/articles/nplants201423
N2 - Despite evolutionary conserved mechanisms to silence transposable element activity, there are drastic differences in the abundance of transposable elements even among closely related plant species. We conducted a de novo assembly for the 375 Mb genome of the perennial model plant, Arabis alpina. Analysing this genome revealed long-lasting and recent transposable element activity predominately driven by Gypsy long terminal repeat retrotransposons, which extended the low-recombining pericentromeres and transformed large formerly euchromatic regions into repeat-rich pericentromeric regions. This reduced capacity for long terminal repeat retrotransposon silencing and removal in A. alpina co-occurs with unexpectedly low levels of DNA methylation. Most remarkably, the striking reduction of symmetrical CG and CHG methylation suggests weakened DNA methylation maintenance in A. alpina compared with Arabidopsis thaliana. Phylogenetic analyses indicate a highly dynamic evolution of some components of methylation maintenance machinery that might be related to the unique methylation in A. alpina.
ER -
WILLING, Eva-Maria, Vimal RAWAT, Terezie MANDÁKOVÁ, Florian MAUMUS, Geo Velikkakam JAMES, Karl J. V. NORDSTROM, Claude BECKER, Norman WARTHMANN, Claudia CHICA, Bogna SZARZYNSKA, Matthias ZYTNICKI, Maria C. ALBANI, Christiane KIEFER, Sara BERGONZI, Loren CASTAINGS, Julieta L. MATEOS, Markus C. BERNS, Nora BUJDOSO, Thomas PIOFCZYK, Laura DE LORENZO, Cristina BARRERO-SICILIA, Isabel MATEOS, Mathieu PIEDNOEL, Joerg HAGMANN, Romy CHEN-MIN-TAO, Raquel IGLESIAS-FERNANDEZ, Stephan C. SCHUSTER, Carlos ALONSO-BLANCO, Francois ROUDIER, Pilar CARBONERO, Javier PAZ-ARES, Seth J. DAVIS, Aleš PEČINKA, Hadi QUESNEVILLE, Vincent COLOT, Martin LYSÁK, Detlef WEIGEL, George COUPLAND and Korbinian SCHNEEBERGER. Genome expansion of Arabis alpina linked with retrotransposition and reduced symmetric DNA methylation. \textit{NATURE PLANTS}. LONDON: NATURE PUBLISHING GROUP, 2015, vol.~1, No~2, p.~1-7. ISSN~2055-026X. Available from: https://dx.doi.org/10.1038/NPLANTS.2014.23.
|
