Classification of strain CCM 4446T as Rhodococcus degradans sp.
nov.

J 2015

Classification of strain CCM 4446T as Rhodococcus degradans sp. nov.

ŠVEC, Pavel, Jitka ČERNOHLÁVKOVÁ, Hans Jurgen BUSSE, Hana VOJTKOVÁ, Roman PANTŮČEK et. al.

Basic information

Original name

Classification of strain CCM 4446T as Rhodococcus degradans sp. nov.

Authors

ŠVEC, Pavel (203 Czech Republic, guarantor, belonging to the institution), Jitka ČERNOHLÁVKOVÁ (203 Czech Republic, belonging to the institution), Hans Jurgen BUSSE (40 Austria), Hana VOJTKOVÁ (203 Czech Republic), Roman PANTŮČEK (203 Czech Republic, belonging to the institution), Margo CNOCKAERT (56 Belgium), Ivana MAŠLAŇOVÁ (203 Czech Republic, belonging to the institution), Stanislava KRÁLOVÁ (703 Slovakia, belonging to the institution), Peter VANDAMME (56 Belgium) and Ivo SEDLÁČEK (203 Czech Republic, belonging to the institution)

Edition

International Journal of Systematic and Evolutionary Microbiology, Society for General Microbiology, 2015, 1466-5026

Other information

Language

English

Type of outcome

Článek v odborném periodiku

Field of Study

10600 1.6 Biological sciences

Country of publisher

United Kingdom of Great Britain and Northern Ireland

Confidentiality degree

není předmětem státního či obchodního tajemství

References:

URL

Impact factor

Impact factor: 2.439

RIV identification code

RIV/00216224:14310/15:00086923

Organization unit

Faculty of Science

DOI

http://dx.doi.org/10.1099/ijsem.0.000584

UT WoS

000370460600014

Keywords in English

Rhodococcus degradans sp. nov.; taxonomy; biodegradation

Abstract

V originále

Strain CCM 4446T, with notable biodegradation capabilities, was investigated in this study in order to elucidate its taxonomic position. Chemotaxonomic analyses of quinones, polar lipids, mycolic acids, polyamines and the diamino acid of the cell-wall peptidoglycan corresponded with characteristics of the genus Rhodococcus. Phylogenetic analysis, based on the 16S rRNA gene sequence, assigned strain CCM 4446T to the genus Rhodococcus and placed it in the Rhodococcus erythropolis 16S rRNA gene clade. Further analysis of catA and gyrB gene sequences, automated ribotyping with EcoRI restriction endonuclease, whole-cell protein profiling, DNA–DNA hybridization and extensive biotyping enabled differentiation of strain CCM 4446T from all phylogenetically closely related species, i.e., Rhodococcus baikonurensis, Rhodococcus qingshengii, Rhodococcus erythropolis and Rhodococcus globerulus. The results obtained show that the strain investigated represents a novel species within the genus Rhodococcus, for which the name Rhodococcus degradans sp. nov., is proposed. The type strain is CCM 4446T (LMG 28633T).

Links

EE2.3.20.0183, research and development project

Name: Centrum experimentální biomedicíny

Citovat

ŠVEC, Pavel, Jitka ČERNOHLÁVKOVÁ, Hans Jurgen BUSSE, Hana VOJTKOVÁ, Roman PANTŮČEK, Margo CNOCKAERT, Ivana MAŠLAŇOVÁ, Stanislava KRÁLOVÁ, Peter VANDAMME and Ivo SEDLÁČEK. Classification of strain CCM 4446T as Rhodococcus degradans sp. nov. International Journal of Systematic and Evolutionary Microbiology. Society for General Microbiology, 2015, vol. 65, December, p. 4381-4387. ISSN 1466-5026. Available from: https://dx.doi.org/10.1099/ijsem.0.000584.

@article{1338541,
   author = {Švec, Pavel and Černohlávková, Jitka and Busse, Hans Jurgen and Vojtková, Hana and Pantůček, Roman and Cnockaert, Margo and Mašlaňová, Ivana and Králová, Stanislava and Vandamme, Peter and Sedláček, Ivo},
   article_number = {December},
   doi = {http://dx.doi.org/10.1099/ijsem.0.000584},
   keywords = {Rhodococcus degradans sp. nov.; taxonomy; biodegradation},
   language = {eng},
   issn = {1466-5026},
   journal = {International Journal of Systematic and Evolutionary Microbiology},
   title = {Classification of strain CCM 4446T as Rhodococcus degradans sp. nov.},
   url = {http://ijs.microbiologyresearch.org/content/journal/ijsem/10.1099/ijsem.0.000584},
   volume = {65},
   year = {2015}
}

TY  - JOUR
ID  - 1338541
AU  - Švec, Pavel - Černohlávková, Jitka - Busse, Hans Jurgen - Vojtková, Hana - Pantůček, Roman - Cnockaert, Margo - Mašlaňová, Ivana - Králová, Stanislava - Vandamme, Peter - Sedláček, Ivo
PY  - 2015
TI  - Classification of strain CCM 4446T as Rhodococcus degradans sp. nov.
JF  - International Journal of Systematic and Evolutionary Microbiology
VL  - 65
IS  - December
SP  - 4381-4387
EP  - 4381-4387
PB  - Society for General Microbiology
SN  - 14665026
KW  - Rhodococcus degradans sp. nov.
KW  - taxonomy
KW  - biodegradation
UR  - http://ijs.microbiologyresearch.org/content/journal/ijsem/10.1099/ijsem.0.000584
N2  - Strain CCM 4446T, with notable biodegradation capabilities, was investigated in this study in order to elucidate its taxonomic position. Chemotaxonomic analyses of quinones, polar lipids, mycolic acids, polyamines and the diamino acid of the cell-wall peptidoglycan corresponded with characteristics of the genus Rhodococcus. Phylogenetic analysis, based on the 16S rRNA gene sequence, assigned strain CCM 4446T to the genus Rhodococcus and placed it in the Rhodococcus erythropolis 16S rRNA gene clade. Further analysis of catA and gyrB gene sequences, automated ribotyping with EcoRI restriction endonuclease, whole-cell protein profiling, DNA–DNA hybridization and extensive biotyping enabled differentiation of strain CCM 4446T from all phylogenetically closely related species, i.e., Rhodococcus baikonurensis, Rhodococcus qingshengii, Rhodococcus erythropolis and Rhodococcus globerulus. The results obtained show that the strain investigated represents a novel species within the genus Rhodococcus, for which the name Rhodococcus degradans sp. nov., is proposed. The type strain is CCM 4446T (LMG 28633T).
ER  -

ŠVEC, Pavel, Jitka ČERNOHLÁVKOVÁ, Hans Jurgen BUSSE, Hana VOJTKOVÁ, Roman PANTŮČEK, Margo CNOCKAERT, Ivana MAŠLAŇOVÁ, Stanislava KRÁLOVÁ, Peter VANDAMME and Ivo SEDLÁČEK. Classification of strain CCM 4446T as Rhodococcus degradans sp. nov. \textit{International Journal of Systematic and Evolutionary Microbiology}. Society for General Microbiology, 2015, vol.~65, December, p.~4381-4387. ISSN~1466-5026. Available from: https://dx.doi.org/10.1099/ijsem.0.000584.

Detailed Information on Publication Record