CHAIJAN, Mahnaz Rostami, Mehrdad POURAYOUBI, Marek NEČAS and Krishnan DAMODARAN. C=O center dot center dot center dot pi Interaction: A Rare Noncovalent Binding in RC(O)NHP(O)[(NRR2)-R-1](2) Phosphoric Triamide Structures. Phosphorus, Sulfur, and Silicon and the related elements. Taylor and Francis Inc., 2015, vol. 190, 5-6, p. 911-917. ISSN 1042-6507. Available from: https://dx.doi.org/10.1080/10426507.2014.991826.
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Basic information
Original name C=O center dot center dot center dot pi Interaction: A Rare Noncovalent Binding in RC(O)NHP(O)[(NRR2)-R-1](2) Phosphoric Triamide Structures
Authors CHAIJAN, Mahnaz Rostami (364 Islamic Republic of Iran), Mehrdad POURAYOUBI (364 Islamic Republic of Iran), Marek NEČAS (203 Czech Republic, guarantor, belonging to the institution) and Krishnan DAMODARAN (356 India).
Edition Phosphorus, Sulfur, and Silicon and the related elements, Taylor and Francis Inc. 2015, 1042-6507.
Other information
Original language English
Type of outcome Article in a journal
Field of Study 10402 Inorganic and nuclear chemistry
Country of publisher United Kingdom of Great Britain and Northern Ireland
Confidentiality degree is not subject to a state or trade secret
Impact factor Impact factor: 0.723
RIV identification code RIV/00216224:14310/15:00086934
Organization unit Faculty of Science
Doi http://dx.doi.org/10.1080/10426507.2014.991826
UT WoS 000357323000056
Keywords in English CSD; C=O center dot center dot center dot pi; phosphoric triamide; crystal structure
Tags AKR, rivok
Tags International impact, Reviewed
Changed by Changed by: doc. Mgr. Marek Nečas, Ph.D., učo 18809. Changed: 13/3/2018 10:19.
Abstract
In the structure of C6F5C(O)NHP(O)[N(C2H5)(C6H11)](2), in addition to N-H center dot center dot center dot O=P hydrogen bond, the oxygen atom of P=O group is involved in the P=O center dot center dot center dot pi interaction (O-P center dot center dot center dot Cg = 3.507(1) angstrom, Cg is the centroid of C6F5 ring). Moreover, a noncovalent C=O center dot center dot center dot pi interaction takes part in the crystal packing, O-C center dot center dot center dot Cg = 3.159(1) angstrom. The C=O center dot center dot center dot pi interaction is the interesting feature of this structure, as a Cambridge Structural Database analysis (CSD; Allen, Acta Cryst. 2002, B58, 380-388) of 149 structures with a C(O)NHP(O)[N](2) skeleton shows that such an interaction exists only in 4 structures. The dihedral angle between the aromatic ring and the plane defined by the atoms of [C][N]C=O segment is 66.66 degrees. The C=O bond length in the present structure (of 1.2148(18) angstrom) is within the expected range for compounds with a C(O)NHP(O)[N](2) segment; however, due to the electronic effect caused by C6F5 group, it is in the region of the short bond lengths for analogous structures deposited in the CSD (1.18-1.26 angstrom). The P=O (1.4831(10) angstrom) and P-N (1.6340(12) angstrom and 1.6424(12) angstrom) bond lengths are standard for a phosphoric triamide structure and the P-N bond of C(O)NHP(O) segment (1.6980(12) angstrom) has an expected longer value relative to the other P-N bonds. The bond-angle sums around the tertiary nitrogen atoms (SUM = 2 x P-N-C + C-N-C) are 357.8 degrees and 352.0 degrees that show few deviations from the planar value of 360 degrees. The more pyramidal N atom is oriented so that the corresponding lone electron pair is anti with respect to the P=O group.
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