J 2016

NMR solution structure determination of large RNA-protein complexes

YADAV, Deepak Kumar and Peter LUKAVSKY

Basic information

Original name

NMR solution structure determination of large RNA-protein complexes

Authors

YADAV, Deepak Kumar (356 India, belonging to the institution) and Peter LUKAVSKY (40 Austria, guarantor, belonging to the institution)

Edition

PROGRESS IN NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY, OXFORD, PERGAMON-ELSEVIER SCIENCE LTD, 2016, 0079-6565

Other information

Language

English

Type of outcome

Článek v odborném periodiku

Field of Study

10403 Physical chemistry

Country of publisher

United Kingdom of Great Britain and Northern Ireland

Confidentiality degree

není předmětem státního či obchodního tajemství

References:

URL

Impact factor

Impact factor: 5.971

RIV identification code

RIV/00216224:14740/16:00088765

Organization unit

Central European Institute of Technology

DOI

http://dx.doi.org/10.1016/j.pnmrs.2016.10.001

UT WoS

000390507100003

Keywords in English

Biomolecular NMR; RNA-protein complex; NMR assignments; NMR structure determination; RNA-protein interaction; Isotope labeling; Integrated structural biology

Tags

CF NMR, rivok
Změněno: 10/3/2017 09:39, Mgr. Eva Špillingová

Abstract

V originále

Structure determination of RNA-protein complexes is essential for our understanding of the multiple layers of RNA-mediated posttranscriptional regulation of gene expression. Over the past 20 years, NMR spectroscopy became a key tool for structural studies of RNA-protein interactions. Here, we review the progress being made in NMR structure determination of large ribonucleoprotein assemblies. We discuss approaches for the design of RNA-protein complexes for NMR structural studies, established and emerging isotope and segmental labeling schemes suitable for large RNPs and how to gain distance restraints from NOEs, PREs and EPR and orientational information from RDCs and SAXS/SANS in such systems. the new combination of NMR measurements with MD simulations and its potential will also be discussed. Application and combination of these various methods for structure determination of large RNPs will be illustrated with three large RNA-protein complexes (>40 kDa) and other interesting complexes determined in the past six and a half years. (C) 2016 Elsevier B.V. All rights reserved.

Links

ED1.1.00/02.0068, research and development project
Name: CEITEC - central european institute of technology
EE2.3.20.0042, research and development project
Name: Internacionalizace programu Strukturní biologie s důrazem na rozvoj nových směrů výzkumu
GA15-21122S, research and development project
Name: Strukturní podstata změn v sestřihu způsobující cystickou fibrózu
Investor: Czech Science Foundation
LM2015043, research and development project
Name: Česká infrastruktura pro integrativní strukturní biologii (Acronym: CIISB)
Investor: Ministry of Education, Youth and Sports of the CR
LQ1601, research and development project
Name: CEITEC 2020 (Acronym: CEITEC2020)
Investor: Ministry of Education, Youth and Sports of the CR
Displayed: 5/11/2024 03:40