ARResT/Interrogate: an interactive immunoprofiler for IG/TR NGS
data

J 2017

ARResT/Interrogate: an interactive immunoprofiler for IG/TR NGS data

BYSTRÝ, Vojtěch, Tomáš REIGL, Adam KREJČÍ, Martin DEMKO, Barbora HANÁKOVÁ et. al.

Basic information

Original name

ARResT/Interrogate: an interactive immunoprofiler for IG/TR NGS data

Authors

BYSTRÝ, Vojtěch (203 Czech Republic, belonging to the institution), Tomáš REIGL (203 Czech Republic, belonging to the institution), Adam KREJČÍ (203 Czech Republic, belonging to the institution), Martin DEMKO (703 Slovakia, belonging to the institution), Barbora HANÁKOVÁ (203 Czech Republic, belonging to the institution), Andrea GRIONI (380 Italy, belonging to the institution), Henrik KNECHT (276 Germany), Max SCHLITT (276 Germany), Peter DREGER (276 Germany), Leopold SELLNER (276 Germany), Dietrich HERRMANN (276 Germany), Marine PINGEON (250 France), Myriam BOUDJOGHRA (250 France), Jos RIJNTJES (528 Netherlands), Christiane POTT (276 Germany), Anton W. LANGERAK (528 Netherlands), Patricia J. T. A. GROENEN (528 Netherlands), Frederic DAVI (250 France), Monika BRUGGEMANN (276 Germany) and Nikos DARZENTAS (300 Greece)

Edition

Bioinformatics, Oxford, Oxford University Press, 2017, 1367-4803

Other information

Language

English

Type of outcome

Článek v odborném periodiku

Field of Study

10600 1.6 Biological sciences

Country of publisher

United Kingdom of Great Britain and Northern Ireland

Confidentiality degree

není předmětem státního či obchodního tajemství

References:

URL

Impact factor

Impact factor: 5.481

RIV identification code

RIV/00216224:14740/17:00095641

Organization unit

Central European Institute of Technology

DOI

http://dx.doi.org/10.1093/bioinformatics/btw634

UT WoS

000397260800018

Keywords in English

REPERTOIRE

Abstract

V originále

Motivation: The study of immunoglobulins and T cell receptors using next-generation sequencing has finally allowed exploring immune repertoires and responses in their immense variability and complexity. Unsurprisingly, their analysis and interpretation is a highly convoluted task. Results: We thus implemented ARResT/Interrogate, a web-based, interactive application. It can organize and filter large amounts of immunogenetic data by numerous criteria, calculate several relevant statistics, and present results in the form of multiple interconnected visualizations.

Links

ED3.2.00/08.0144, research and development project

Name: CERIT Scientific Cloud

LM2010005, research and development project

Name: Velká infrastruktura CESNET (Acronym: VI CESNET)

Investor: Ministry of Education, Youth and Sports of the CR

LQ1601, research and development project

Name: CEITEC 2020 (Acronym: CEITEC2020)

Investor: Ministry of Education, Youth and Sports of the CR

NV16-34272A, research and development project

Name: Encyklopedie CLL podskupin: unikátní znalostní databáze vybavená bioinformatickými nástroji použitelná v personalizované biomedicíně a klinické praxi

Citovat

BYSTRÝ, Vojtěch, Tomáš REIGL, Adam KREJČÍ, Martin DEMKO, Barbora HANÁKOVÁ, Andrea GRIONI, Henrik KNECHT, Max SCHLITT, Peter DREGER, Leopold SELLNER, Dietrich HERRMANN, Marine PINGEON, Myriam BOUDJOGHRA, Jos RIJNTJES, Christiane POTT, Anton W. LANGERAK, Patricia J. T. A. GROENEN, Frederic DAVI, Monika BRUGGEMANN and Nikos DARZENTAS. ARResT/Interrogate: an interactive immunoprofiler for IG/TR NGS data. Bioinformatics. Oxford: Oxford University Press, 2017, vol. 33, No 3, p. 435-437. ISSN 1367-4803. Available from: https://dx.doi.org/10.1093/bioinformatics/btw634.

@article{1381958,
   author = {Bystrý, Vojtěch and Reigl, Tomáš and Krejčí, Adam and Demko, Martin and Hanáková, Barbora and Grioni, Andrea and Knecht, Henrik and Schlitt, Max and Dreger, Peter and Sellner, Leopold and Herrmann, Dietrich and Pingeon, Marine and Boudjoghra, Myriam and Rijntjes, Jos and Pott, Christiane and Langerak, Anton W. and Groenen, Patricia J. T. A. and Davi, Frederic and Bruggemann, Monika and Darzentas, Nikos},
   article_location = {Oxford},
   article_number = {3},
   doi = {http://dx.doi.org/10.1093/bioinformatics/btw634},
   keywords = {REPERTOIRE},
   language = {eng},
   issn = {1367-4803},
   journal = {Bioinformatics},
   title = {ARResT/Interrogate: an interactive immunoprofiler for IG/TR NGS data},
   url = {https://academic.oup.com/bioinformatics/article-abstract/33/3/435/2580414/ARResT-Interrogate-an-interactive-immunoprofiler?redirectedFrom=fulltext},
   volume = {33},
   year = {2017}
}

TY  - JOUR
ID  - 1381958
AU  - Bystrý, Vojtěch - Reigl, Tomáš - Krejčí, Adam - Demko, Martin - Hanáková, Barbora - Grioni, Andrea - Knecht, Henrik - Schlitt, Max - Dreger, Peter - Sellner, Leopold - Herrmann, Dietrich - Pingeon, Marine - Boudjoghra, Myriam - Rijntjes, Jos - Pott, Christiane - Langerak, Anton W. - Groenen, Patricia J. T. A. - Davi, Frederic - Bruggemann, Monika - Darzentas, Nikos
PY  - 2017
TI  - ARResT/Interrogate: an interactive immunoprofiler for IG/TR NGS data
JF  - Bioinformatics
VL  - 33
IS  - 3
SP  - 435-437
EP  - 435-437
PB  - Oxford University Press
SN  - 13674803
KW  - REPERTOIRE
UR  - https://academic.oup.com/bioinformatics/article-abstract/33/3/435/2580414/ARResT-Interrogate-an-interactive-immunoprofiler?redirectedFrom=fulltext
L2  - https://academic.oup.com/bioinformatics/article-abstract/33/3/435/2580414/ARResT-Interrogate-an-interactive-immunoprofiler?redirectedFrom=fulltext
N2  - Motivation: The study of immunoglobulins and T cell receptors using next-generation sequencing has finally allowed exploring immune repertoires and responses in their immense variability and complexity. Unsurprisingly, their analysis and interpretation is a highly convoluted task. Results: We thus implemented ARResT/Interrogate, a web-based, interactive application. It can organize and filter large amounts of immunogenetic data by numerous criteria, calculate several relevant statistics, and present results in the form of multiple interconnected visualizations.
ER  -

BYSTRÝ, Vojtěch, Tomáš REIGL, Adam KREJČÍ, Martin DEMKO, Barbora HANÁKOVÁ, Andrea GRIONI, Henrik KNECHT, Max SCHLITT, Peter DREGER, Leopold SELLNER, Dietrich HERRMANN, Marine PINGEON, Myriam BOUDJOGHRA, Jos RIJNTJES, Christiane POTT, Anton W. LANGERAK, Patricia J. T. A. GROENEN, Frederic DAVI, Monika BRUGGEMANN and Nikos DARZENTAS. ARResT/Interrogate: an interactive immunoprofiler for IG/TR NGS data. \textit{Bioinformatics}. Oxford: Oxford University Press, 2017, vol.~33, No~3, p.~435-437. ISSN~1367-4803. Available from: https://dx.doi.org/10.1093/bioinformatics/btw634.

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