Detailed Information on Publication Record
2017
Biochemical Space: A framework for formal description and annotation of complex biological processes
TROJÁK, Matej, David ŠAFRÁNEK, Jakub ŠALAGOVIČ, Františka ROMANOVSKÁ, Matej HAJNAL et. al.Basic information
Original name
Biochemical Space: A framework for formal description and annotation of complex biological processes
Authors
Edition
Computational Modeling in Biology Network meeting (COMBINE 2017), 2017
Other information
Language
English
Type of outcome
Prezentace na konferencích
Field of Study
10201 Computer sciences, information science, bioinformatics
Country of publisher
Czech Republic
Confidentiality degree
není předmětem státního či obchodního tajemství
References:
Organization unit
Faculty of Informatics
Keywords in English
formal specification; biological systems; systems biology; rule-based language
Tags
International impact, Reviewed
Změněno: 30/10/2017 11:13, RNDr. Matej Troják, Ph.D.
Abstract
V originále
Biochemical Space is a novel framework for practical description of complex biological processes. It is developed as a part of Comprehensive Modeling Platform - a web-based platform for modeling and analysis of biological processes. In the context of the platform, Biochemical Space binds complicated quantitative models with an easy-to-understand, yet formal and compact qualitative description. It allows us to specify formal and well-annotated reaction networks of chemical entities and elemental reactions onto which the mathematical models are projected. Biochemical Space is supported by Biochemical Space Language that combines state-of-the-art rule-based techniques with metadata formats developed in well-known annotation databases.
Links
| GA15-11089S, research and development project |
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| LM2015055, research and development project |
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| MUNI/A/0945/2015, interní kód MU |
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