Free-Living Enterobacterium Pragia fontium 24613: Complete
Genome Sequence and Metabolic Profiling

J 2017

Free-Living Enterobacterium Pragia fontium 24613: Complete Genome Sequence and Metabolic Profiling

SNOPKOVÁ, Kateřina, Karel SEDLÁŘ, Juraj BOSÁK, Eva CHALOUPKOVÁ, Ivo SEDLÁČEK et. al.

Basic information

Original name

Free-Living Enterobacterium Pragia fontium 24613: Complete Genome Sequence and Metabolic Profiling

Authors

SNOPKOVÁ, Kateřina (203 Czech Republic, belonging to the institution), Karel SEDLÁŘ (203 Czech Republic), Juraj BOSÁK (703 Slovakia, belonging to the institution), Eva CHALOUPKOVÁ (203 Czech Republic, belonging to the institution), Ivo SEDLÁČEK (203 Czech Republic, belonging to the institution), Ivo PROVAZNÍK (203 Czech Republic) and David ŠMAJS (203 Czech Republic, guarantor, belonging to the institution)

Edition

Evolutionary Bioinformatics, London, Sage Publications LTD, 2017, 1176-9343

Other information

Language

English

Type of outcome

Článek v odborném periodiku

Field of Study

10602 Biology , Evolutionary biology

Country of publisher

United Kingdom of Great Britain and Northern Ireland

Confidentiality degree

není předmětem státního či obchodního tajemství

Impact factor

Impact factor: 1.877

RIV identification code

RIV/00216224:14110/17:00095198

Organization unit

Faculty of Medicine

DOI

http://dx.doi.org/10.1177/1176934317700863

UT WoS

000397968000001

Keywords in English

Pragia fontium; Enterobacteriaceae; whole genome sequence; phylogeny; free-living bacteria

Abstract

V originále

Whole genome sequencing and metabolic fingerprinting confirmed the phylogenetic position of P. fontium inside the group of atypical H2S producers. Genomic data have revealed that P- fontium 24613 has limited pathogenic potential, although there are signs of genome decay. Although the lack of specific virulence factors and no association with a host species suggest a free-living style, the signs of genome decay suggest a proces of adaptation to an as-yet-unknown host.

Links

GA16-21649S, research and development project

Name: Molekulární charakterizace nových bakteriocinů identifikovaných v rodech Escherichia a Shigella

Investor: Czech Science Foundation

MUNI/11/InGA04/2014, interní kód MU

Name: Alternativní antimikrobiální látky: studium vazby kolicinů na povrch patogenní bakterie

Investor: Masaryk University

Citovat

SNOPKOVÁ, Kateřina, Karel SEDLÁŘ, Juraj BOSÁK, Eva CHALOUPKOVÁ, Ivo SEDLÁČEK, Ivo PROVAZNÍK and David ŠMAJS. Free-Living Enterobacterium Pragia fontium 24613: Complete Genome Sequence and Metabolic Profiling. Evolutionary Bioinformatics. London: Sage Publications LTD, 2017, vol. 13, No 1176934317700863, p. 1-7. ISSN 1176-9343. Available from: https://dx.doi.org/10.1177/1176934317700863.

@article{1396379,
   author = {Snopková, Kateřina and Sedlář, Karel and Bosák, Juraj and Chaloupková, Eva and Sedláček, Ivo and Provazník, Ivo and Šmajs, David},
   article_location = {London},
   article_number = {1176934317700863},
   doi = {http://dx.doi.org/10.1177/1176934317700863},
   keywords = {Pragia fontium; Enterobacteriaceae; whole genome sequence; phylogeny; free-living bacteria},
   language = {eng},
   issn = {1176-9343},
   journal = {Evolutionary Bioinformatics},
   title = {Free-Living Enterobacterium Pragia fontium 24613: Complete Genome Sequence and Metabolic Profiling},
   volume = {13},
   year = {2017}
}

TY  - JOUR
ID  - 1396379
AU  - Snopková, Kateřina - Sedlář, Karel - Bosák, Juraj - Chaloupková, Eva - Sedláček, Ivo - Provazník, Ivo - Šmajs, David
PY  - 2017
TI  - Free-Living Enterobacterium Pragia fontium 24613: Complete Genome Sequence and Metabolic Profiling
JF  - Evolutionary Bioinformatics
VL  - 13
IS  - 1176934317700863
SP  - 1-7
EP  - 1-7
PB  - Sage Publications LTD
SN  - 11769343
KW  - Pragia fontium
KW  - Enterobacteriaceae
KW  - whole genome sequence
KW  - phylogeny
KW  - free-living bacteria
N2  - Whole genome sequencing and metabolic fingerprinting confirmed the phylogenetic position of P. fontium inside the group of atypical H2S producers. Genomic data have revealed that P- fontium 24613 has limited pathogenic potential, although there are signs of genome decay. Although the lack of specific virulence factors and no association with a host species suggest a free-living style, the signs of genome decay suggest a proces of adaptation to an as-yet-unknown host.
ER  -

SNOPKOVÁ, Kateřina, Karel SEDLÁŘ, Juraj BOSÁK, Eva CHALOUPKOVÁ, Ivo SEDLÁČEK, Ivo PROVAZNÍK and David ŠMAJS. Free-Living Enterobacterium Pragia fontium 24613: Complete Genome Sequence and Metabolic Profiling. \textit{Evolutionary Bioinformatics}. London: Sage Publications LTD, 2017, vol.~13, No~1176934317700863, p.~1-7. ISSN~1176-9343. Available from: https://dx.doi.org/10.1177/1176934317700863.

Detailed Information on Publication Record