MAŠKA, Martin and Pavel MATULA. Particle Tracking Accuracy Measurement Based on Comparison of Linear Oriented Forests. In 16th IEEE International Conference on Computer Vision Workshops. Venice: IEEE. p. 11-17. ISBN 978-1-5386-1034-3. doi:10.1109/ICCVW.2017.8. 2017.
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Basic information
Original name Particle Tracking Accuracy Measurement Based on Comparison of Linear Oriented Forests
Authors MAŠKA, Martin (203 Czech Republic, guarantor, belonging to the institution) and Pavel MATULA (203 Czech Republic, belonging to the institution).
Edition Venice, 16th IEEE International Conference on Computer Vision Workshops, p. 11-17, 7 pp. 2017.
Publisher IEEE
Other information
Original language English
Type of outcome Proceedings paper
Field of Study 10201 Computer sciences, information science, bioinformatics
Country of publisher United States of America
Confidentiality degree is not subject to a state or trade secret
Publication form electronic version available online
WWW URL
RIV identification code RIV/00216224:14330/17:00095219
Organization unit Faculty of Informatics
ISBN 978-1-5386-1034-3
ISSN 2473-9936
Doi http://dx.doi.org/10.1109/ICCVW.2017.8
UT WoS 000425239600002
Keywords in English particle tracking;linear oriented forest;performance evaluation
Tags cbia-web
Tags International impact, Reviewed
Changed by Changed by: doc. RNDr. Pavel Matula, Ph.D., učo 2927. Changed: 9/2/2022 09:16.
Abstract
Particle tracking is of fundamental importance in diverse quantitative analyses of dynamic intracellular processes using time-lapse microscopy. Due to frequent impracticability of tracking particles manually, a number of fully automated algorithms have been developed over past decades, carrying out the tracking task in two subsequent phases: (1) particle detection and (2) particle linking. An objective benchmark for assessing the performance of such algorithms was recently established by the Particle Tracking Challenge. Because its performance evaluation protocol finds correspondences between a reference and algorithm-generated tracking result at the level of individual tracks, the performance assessment strongly depends on the algorithm linking capabilities. In this paper, we propose a novel performance evaluation protocol based on a simplified version of the tracking accuracy measure employed in the Cell Tracking Challenge, which establishes the correspondences at the level of individual particle detections, thus allowing one to evaluate the performance of each of the two phases in an isolated, unbiased manner. By analyzing the tracking results of all 14 algorithms competing in the Particle Tracking Challenge using the proposed evaluation protocol, we reveal substantial changes in their detection and linking performance, yielding rankings different from those reported previously.
Links
GJ16-03909Y, research and development projectName: Vývoj spolehlivých metod pro automatizovanou kvantitativní charakterizaci buněčné motility ve fluorescenční mikroskopii
Investor: Czech Science Foundation
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