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@article{1408017,
author = {Tristao Ramos, Ravi José and de Azevedo Martins, Allan Cézar and da Silva Delgado, Gabrielle and Ionescu, CrinaandMaria and Ürményi, Peter Turán and Silva, Rosane and Koča, Jaroslav and de Azevedo Martins, Allan Cézar and da Silva Delgado, Gabrielle},
article_location = {Oxford},
article_number = {22},
doi = {http://dx.doi.org/10.1093/bioinformatics/btx465},
keywords = {sequence analysis; genomics; genome annotation; BLAST},
language = {eng},
issn = {1367-4803},
journal = {Bioinformatics},
title = {CrocoBLAST: Running BLAST efficiently in the age of next-generation sequencing},
url = {https://academic.oup.com/bioinformatics/article-abstract/33/22/3648/4004881},
volume = {33},
year = {2017}
}
TY - JOUR
ID - 1408017
AU - Tristao Ramos, Ravi José - de Azevedo Martins, Allan Cézar - da Silva Delgado, Gabrielle - Ionescu, Crina-Maria - Ürményi, Peter Turán - Silva, Rosane - Koča, Jaroslav - de Azevedo Martins, Allan Cézar - da Silva Delgado, Gabrielle
PY - 2017
TI - CrocoBLAST: Running BLAST efficiently in the age of next-generation sequencing
JF - Bioinformatics
VL - 33
IS - 22
SP - 3648-3651
EP - 3648-3651
PB - Oxford University Press
SN - 13674803
KW - sequence analysis
KW - genomics
KW - genome annotation
KW - BLAST
UR - https://academic.oup.com/bioinformatics/article-abstract/33/22/3648/4004881
L2 - https://academic.oup.com/bioinformatics/article-abstract/33/22/3648/4004881
N2 - CrocoBLAST is a tool for dramatically speeding up BLAST+ execution on any computer. Alignments that would take days or weeks with NCBI BLAST+ can be run overnight with CrocoBLAST. Additionally, CrocoBLAST provides features critical for NGS data analysis, including: results identical to those of BLAST+; compatibility with any BLAST+ version; real-time information regarding calculation progress and remaining run time; access to partial alignment results; queueing, pausing, and resuming BLAST+ calculations without information loss. CrocoBLAST is freely available online, with ample documentation (webchem.ncbr.muni.cz/Platform/App/CrocoBLAST). No installation or user registration is required. CrocoBLAST is implemented in C, while the graphical user interface is implemented in Java. CrocoBLAST is supported under Linux and Windows, and can be run under Mac OS X in a Linux virtual machine.
ER -
TRISTAO RAMOS, Ravi José, Allan Cézar DE AZEVEDO MARTINS, Gabrielle DA SILVA DELGADO, Crina-Maria IONESCU, Peter Turán ÜRMÉNYI, Rosane SILVA and Jaroslav KOČA. CrocoBLAST: Running BLAST efficiently in the age of next-generation sequencing. \textit{Bioinformatics}. Oxford: Oxford University Press, 2017, vol.~33, No~22, p.~3648-3651. ISSN~1367-4803. Available from: https://dx.doi.org/10.1093/bioinformatics/btx465.
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