J 2017

Enzyme Tunnels and Gates As Relevant Targets in Drug Design

MARQUES, Sérgio Manuel, Lukáš DANIEL, Tomáš BURYŠKA, Zbyněk PROKOP, Jan BREZOVSKÝ et. al.

Basic information

Original name

Enzyme Tunnels and Gates As Relevant Targets in Drug Design

Authors

MARQUES, Sérgio Manuel (620 Portugal, belonging to the institution), Lukáš DANIEL (203 Czech Republic, belonging to the institution), Tomáš BURYŠKA (203 Czech Republic, belonging to the institution), Zbyněk PROKOP (203 Czech Republic, belonging to the institution), Jan BREZOVSKÝ (203 Czech Republic, belonging to the institution) and Jiří DAMBORSKÝ (203 Czech Republic, guarantor, belonging to the institution)

Edition

MEDICINAL RESEARCH REVIEWS, Hoboken, USA, WILEY, 2017, 0198-6325

Other information

Language

English

Type of outcome

Článek v odborném periodiku

Field of Study

30104 Pharmacology and pharmacy

Country of publisher

United States of America

Confidentiality degree

není předmětem státního či obchodního tajemství

References:

Impact factor

Impact factor: 8.290

RIV identification code

RIV/00216224:14310/17:00095541

Organization unit

Faculty of Science

UT WoS

000406877600003

Keywords in English

drug design; protein tunnels; protein gates; drug binding; selectivity; specificity

Tags

Změněno: 3/4/2018 14:38, Ing. Nicole Zrilić

Abstract

V originále

Many enzymes contain tunnels and gates that are essential to their function. Gates reversibly switch between open and closed conformations and thereby control the traffic of small molecules-substrates, products, ions, and solvent molecules-into and out of the enzyme's structure via molecular tunnels. Many transient tunnels and gates undoubtedly remain to be identified, and their functional roles and utility as potential drug targets have received comparatively little attention. Here, we describe a set of general concepts relating to the structural properties, function, and classification of these interesting structural features. In addition, we highlight the potential of enzyme tunnels and gates as targets for the binding of small molecules. The different types of binding that are possible and the potential pharmacological benefits of such targeting are discussed. Twelve examples of ligands bound to the tunnels and/or gates of clinically relevant enzymes are used to illustrate the different binding modes and to explain some new strategies for drug design. Such strategies could potentially help to overcome some of the problems facing medicinal chemists and lead to the discovery of more effective drugs.

Links

GA16-06096S, research and development project
Name: Objasnění významu dynamických tunelů pro enzymatickou katalýzu: simulace a fluorescenční experimenty
Investor: Czech Science Foundation
GA16-07965S, research and development project
Name: Řízená evoluce dynamických elementů v enzymech s využitím mikrofluidních čipů
Investor: Czech Science Foundation
LH14027, research and development project
Name: Nové koncepty a nástroje pro racionální design enzymů
Investor: Ministry of Education, Youth and Sports of the CR
LM2015051, research and development project
Name: Centrum pro výzkum toxických látek v prostředí (Acronym: RECETOX RI)
Investor: Ministry of Education, Youth and Sports of the CR
LO1214, research and development project
Name: Centrum pro výzkum toxických látek v prostředí (Acronym: RECETOX)
Investor: Ministry of Education, Youth and Sports of the CR
4SGA8519, interní kód MU
Name: Rational design and engineering of enzyme gates (Acronym: BIOGATE)
Investor: South-Moravian Region, Incoming grants