R 2016

E-cyanobacterium.org: A Web-based Platform for Systems Biology of Cyanobacteria

TROJÁK, Matej, David ŠAFRÁNEK, Jakub HRABEC, Jakub ŠALAGOVIČ, Jan ČERVENÝ et. al.

Basic information

Original name

E-cyanobacterium.org: A Web-based Platform for Systems Biology of Cyanobacteria

Name in Czech

E-cyanobacterium.org: Webová platforma pre modelovanie siníc

Authors

TROJÁK, Matej (703 Slovakia, belonging to the institution), David ŠAFRÁNEK (203 Czech Republic, belonging to the institution), Jakub HRABEC (203 Czech Republic, belonging to the institution), Jakub ŠALAGOVIČ (703 Slovakia, belonging to the institution), Jan ČERVENÝ (203 Czech Republic, belonging to the institution) and Matej HAJNAL (703 Slovakia, belonging to the institution)

Edition

2016

Other information

Language

English

Type of outcome

Software

Field of Study

10201 Computer sciences, information science, bioinformatics

Country of publisher

Czech Republic

Confidentiality degree

není předmětem státního či obchodního tajemství

References:

RIV identification code

RIV/00216224:14330/16:00101019

Organization unit

Faculty of Informatics

Keywords in English

systems biology; cyanobacteria; database; annotation

Technical parameters

webová aplikace

Tags

International impact, Reviewed
Změněno: 22/6/2018 14:30, RNDr. Matej Troják, Ph.D.

Abstract

V originále

E-cyanobacterium.org is an online platform providing tools for public sharing, annotation, analysis, and visualisation of dynamical models and wet-lab experiments related to cyanobacteria. The platform is unique in integrating abstract mathematical models with a precise consortium-agreed biochemical description provided in a rule-based formalism. The general aim is to stimulate collaboration between experimental and computational systems biologists to achieve a better understanding of cyanobacteria.

In Czech

Nástroj poskytuje online platformu pre zdieľanie, anotáciu, analýzu a vizualizáciu dynamických modelov a experimentov týkajúcich sa siníc. Unikátnosť výsledku je v integrovaní matematických modelov s biochemickým popisom pomocou modelovania založeného na pravidlách.

Links

GA15-11089S, research and development project
Name: Získávání parametrů biologických modelů pomocí techniky ověřování modelů
Investor: Czech Science Foundation
LM2015055, research and development project
Name: Centrum pro systémovou biologii (Acronym: C4SYS)
Investor: Ministry of Education, Youth and Sports of the CR