Detailed Information on Publication Record
2017
BCSgen: Biochemical Space language software tool
TROJÁK, Matej, David ŠAFRÁNEK and Jakub ŠALAGOVIČBasic information
Original name
BCSgen: Biochemical Space language software tool
Name in Czech
BCSgen: Softvérová podpora pre jazyk Biochemického priestoru
Authors
TROJÁK, Matej (703 Slovakia, belonging to the institution), David ŠAFRÁNEK (203 Czech Republic, belonging to the institution) and Jakub ŠALAGOVIČ (703 Slovakia, belonging to the institution)
Edition
2017
Other information
Language
English
Type of outcome
Software
Field of Study
10201 Computer sciences, information science, bioinformatics
Country of publisher
Czech Republic
Confidentiality degree
není předmětem státního či obchodního tajemství
References:
RIV identification code
RIV/00216224:14330/17:00101020
Organization unit
Faculty of Informatics
Keywords in English
systems biology; rule-based language; analysis
Technical parameters
Python, desktopová aplikace
Tags
International impact
Změněno: 25/4/2019 16:13, RNDr. Matej Troják, Ph.D.
V originále
BCSgen is a software providing basic functionality to write, maintain, and analyse models written in Biochemical Space Language (BCSL). The key features of the tool are: interactive editor which allows users to create and load models providing automatic syntax highlighting and errors reporting; transition system analysis allows to generate transition system for a given model and consequently analyse it (e.g. perform reachability analysis); simulation of a model with defined kinetic rates with either deterministic or stochastic approach; visualisation of simulated data in an interactive plot chart and visualisation of transition system in a web-based visualisation for exploration of whole space.
In Czech
BCSgen je nástroj poskytujúci funkcionalitu na písanie, udržiavanie a analyzovanie modelov zapísaných v jazyku Biochemického priestoru.
Links
| GA15-11089S, research and development project |
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| LM2015055, research and development project |
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