ŠAFRÁNEK, David, Matej TROJÁK, Vojtěch BRŮŽA, Tomáš VEJPUSTEK, Jan PAPOUŠEK, Martin DEMKO, Samuel PASTVA, Aleš PEJZNOCH and Luboš BRIM. Barbaric Robustness Monitoring Revisited for STL* in Parasim. In Bortolussi L., Sanguinetti G. Computational Methods in Systems Biology (CMSB 2019). LNBI 11773. Neuveden: Springer, 2019, p. 356-359. ISBN 978-3-030-31303-6. Available from: https://dx.doi.org/10.1007/978-3-030-31304-3_26.
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Basic information
Original name Barbaric Robustness Monitoring Revisited for STL* in Parasim
Authors ŠAFRÁNEK, David (203 Czech Republic, guarantor, belonging to the institution), Matej TROJÁK (703 Slovakia, belonging to the institution), Vojtěch BRŮŽA (203 Czech Republic, belonging to the institution), Tomáš VEJPUSTEK (203 Czech Republic), Jan PAPOUŠEK (203 Czech Republic), Martin DEMKO (703 Slovakia, belonging to the institution), Samuel PASTVA (703 Slovakia, belonging to the institution), Aleš PEJZNOCH (203 Czech Republic) and Luboš BRIM (203 Czech Republic, belonging to the institution).
Edition LNBI 11773. Neuveden, Computational Methods in Systems Biology (CMSB 2019), p. 356-359, 4 pp. 2019.
Publisher Springer
Other information
Original language English
Type of outcome Proceedings paper
Field of Study 10201 Computer sciences, information science, bioinformatics
Country of publisher Czech Republic
Confidentiality degree is not subject to a state or trade secret
Publication form printed version "print"
Impact factor Impact factor: 0.402 in 2005
RIV identification code RIV/00216224:14330/19:00107671
Organization unit Faculty of Informatics
ISBN 978-3-030-31303-6
ISSN 0302-9743
Doi http://dx.doi.org/10.1007/978-3-030-31304-3_26
UT WoS 000557875100026
Keywords in English systems biology; robustness analysis; STL
Tags International impact, Reviewed
Changed by Changed by: doc. RNDr. David Šafránek, Ph.D., učo 3159. Changed: 15/4/2021 12:11.
Abstract
In our previous work, we have introduced an extension of signal temporal logic called STL* that allows expressing freezing of values referred within temporal operators. The extension is important especially to express several aspects of signals that cannot be expressed in plain STL (e.g., presence of local extremes and their mutual relationships, nontrivial oscillatory behaviour such as damped oscillations, etc.). In this short paper, we address the tool Parasim that includes an implementation of the algorithm for computing robustness with respect to an STL* specification. The tool is in its current version considered as a prototype implementation of the algorithms for STL* robust monitoring of ODE models.
Links
GA15-11089S, research and development projectName: Získávání parametrů biologických modelů pomocí techniky ověřování modelů
Investor: Czech Science Foundation
LM2015055, research and development projectName: Centrum pro systémovou biologii (Acronym: C4SYS)
Investor: Ministry of Education, Youth and Sports of the CR
MUNI/A/1018/2018, interní kód MUName: Rozsáhlé výpočetní systémy: modely, aplikace a verifikace VIII.
Investor: Masaryk University, Category A
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