Detailed Information on Publication Record
2020
Genome sequences of two Antarctic strains of Pseudomonas prosekii: insights into adaptation to extreme conditions
SNOPKOVÁ, Kateřina, Darina ČEJKOVÁ, Kristýna DUFKOVÁ, Ivo SEDLÁČEK, David ŠMAJS et. al.Basic information
Original name
Genome sequences of two Antarctic strains of Pseudomonas prosekii: insights into adaptation to extreme conditions
Authors
SNOPKOVÁ, Kateřina (203 Czech Republic, belonging to the institution), Darina ČEJKOVÁ (203 Czech Republic), Kristýna DUFKOVÁ (203 Czech Republic, belonging to the institution), Ivo SEDLÁČEK (203 Czech Republic, belonging to the institution) and David ŠMAJS (203 Czech Republic, guarantor, belonging to the institution)
Edition
Archives of Microbiology, New York, Springer, 2020, 0302-8933
Other information
Language
English
Type of outcome
Článek v odborném periodiku
Field of Study
10606 Microbiology
Country of publisher
United States of America
Confidentiality degree
není předmětem státního či obchodního tajemství
References:
Impact factor
Impact factor: 2.552
RIV identification code
RIV/00216224:14110/20:00113999
Organization unit
Faculty of Medicine
UT WoS
000494779700002
Keywords in English
Pseudomonas prosekii; Extremophile; Psychrotolerant; Cold adaptation; James Ross Island; Antarctica
Tags
International impact, Reviewed
Změněno: 15/7/2020 08:51, Mgr. Tereza Miškechová
Abstract
V originále
Pseudomonas prosekii is a recently described species isolated exclusively from James Ross Island close to the Antarctic Peninsula at 64 degrees south latitude. Here, we present two P. prosekii genome sequences and their analyses with respect to phylogeny, low temperature adaptation, and potential biotechnological applications. The genome of P. prosekii P2406 comprised 5,896,482 bp and 5324 genes (GC content of 59.71%); the genome of P. prosekii P2673 consisted of 6,087,670 bp and 5511 genes (GC content of 59.50%). Whole genome sequence comparisons confirmed a close relationship between both investigated strains and strain P. prosekii LMG 26867(T). Gene mining revealed the presence of genes involved in stress response, genes encoding cold shock proteins, oxidative stress proteins, osmoregulation proteins, genes for the synthesis of protection molecules, and siderophores. Comparative genome analysis of P. prosekii and P. aeruginosa PAO1 highlighted differences in genome content between extremophile species and a mesophilic opportunistic pathogen.
Links
GA16-21649S, research and development project |
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LM2015078, research and development project |
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LM2015091, research and development project |
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MUNI/A/1087/2018, interní kód MU |
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