Origin and Evolution of Diploid and Allopolyploid Camelina
Genomes Were Accompanied by Chromosome Shattering

J 2019

Origin and Evolution of Diploid and Allopolyploid Camelina Genomes Were Accompanied by Chromosome Shattering

MANDÁKOVÁ, Terezie, Milan POUCH, J.R. BROCK, I.A. AL-SHEHBAZ, Martin LYSÁK et. al.

Basic information

Original name

Origin and Evolution of Diploid and Allopolyploid Camelina Genomes Were Accompanied by Chromosome Shattering

Authors

MANDÁKOVÁ, Terezie (203 Czech Republic, belonging to the institution), Milan POUCH (203 Czech Republic, belonging to the institution), J.R. BROCK (840 United States of America), I.A. AL-SHEHBAZ (840 United States of America) and Martin LYSÁK (203 Czech Republic, guarantor, belonging to the institution)

Edition

Plant Cell, ROCKVILLE, AMER SOC PLANT BIOLOGISTS, 2019, 1040-4651

Other information

Language

English

Type of outcome

Článek v odborném periodiku

Field of Study

10611 Plant sciences, botany

Country of publisher

United States of America

Confidentiality degree

není předmětem státního či obchodního tajemství

References:

URL

Impact factor

Impact factor: 9.618

RIV identification code

RIV/00216224:14740/19:00108120

Organization unit

Central European Institute of Technology

DOI

http://dx.doi.org/10.1105/tpc.19.00366

UT WoS

000504310900011

Keywords in English

BRASSICACEAE PHYLOGENY; ARABIDOPSIS-THALIANA; RECENT HYBRIDIZATION; FALSE FLAX; SATIVA; CONSEQUENCES; SEQUENCE; CHROMOTHRIPSIS; POLYPLOIDY; PLANTS

Abstract

V originále

Complexes of diploid and polyploid species have formed frequently during the evolution of land plants. In false flax (Camelina sativa), an important hexaploid oilseed crop closely related to Arabidopsis (Arabidopsis thaliana), the putative parental species as well as the origin of other Camelina species remained unknown. By using bacterial artificial chromosome-based chromosome painting, genomic in situ hybridization, and multi-gene phylogenetics, we aimed to elucidate the origin and evolution of the polyploid complex. Genomes of diploid camelinas (Camelina hispida, n = 7; Camelina laxa, n = 6; and Camelina neglecta, n = 6) originated from an ancestral n = 7 genome. The allotetraploid genome of Camelina rumelica (n = 13, (NH)-H-6) arose from hybridization between diploids related to C. neglecta (n = 6, N-6) and C. hispida (n = 7, H), and the N subgenome has undergone a substantial post-polyploid fractionation. The allohexaploid genomes of C. sativa and Camelina microcarpa (n = 20, (NNH)-N-6-H-7) originated through hybridization between an auto-allotetraploid C. neglecta-like genome (n = 13, (NN7)-N-6) and C. hispida (n = 7, H), and the three subgenomes have remained stable overall since the genome merger. Remarkably, the ancestral and diploid Camelina genomes were shaped by complex chromosomal rearrangements, resembling those associated with human disorders and resulting in the origin of genome-specific shattered chromosomes.

Links

GA17-13029S, research and development project

Name: Chybějící souvislosti: evoluce genomu v tribu Camelineae (brukvovité)

Investor: Czech Science Foundation

LQ1601, research and development project

Name: CEITEC 2020 (Acronym: CEITEC2020)

Investor: Ministry of Education, Youth and Sports of the CR

90091, large research infrastructures

Name: NCMG

Citovat

MANDÁKOVÁ, Terezie, Milan POUCH, J.R. BROCK, I.A. AL-SHEHBAZ and Martin LYSÁK. Origin and Evolution of Diploid and Allopolyploid Camelina Genomes Were Accompanied by Chromosome Shattering. Plant Cell. ROCKVILLE: AMER SOC PLANT BIOLOGISTS, 2019, vol. 31, No 11, p. 2596-2612. ISSN 1040-4651. Available from: https://dx.doi.org/10.1105/tpc.19.00366.

@article{1611618,
   author = {Mandáková, Terezie and Pouch, Milan and Brock, J.R. and AlandShehbaz, I.A. and Lysák, Martin},
   article_location = {ROCKVILLE},
   article_number = {11},
   doi = {http://dx.doi.org/10.1105/tpc.19.00366},
   keywords = {BRASSICACEAE PHYLOGENY; ARABIDOPSIS-THALIANA; RECENT HYBRIDIZATION; FALSE FLAX; SATIVA; CONSEQUENCES; SEQUENCE; CHROMOTHRIPSIS; POLYPLOIDY; PLANTS},
   language = {eng},
   issn = {1040-4651},
   journal = {Plant Cell},
   title = {Origin and Evolution of Diploid and Allopolyploid Camelina Genomes Were Accompanied by Chromosome Shattering},
   url = {http://www.plantcell.org/content/31/11/2596},
   volume = {31},
   year = {2019}
}

TY  - JOUR
ID  - 1611618
AU  - Mandáková, Terezie - Pouch, Milan - Brock, J.R. - Al-Shehbaz, I.A. - Lysák, Martin
PY  - 2019
TI  - Origin and Evolution of Diploid and Allopolyploid Camelina Genomes Were Accompanied by Chromosome Shattering
JF  - Plant Cell
VL  - 31
IS  - 11
SP  - 2596-2612
EP  - 2596-2612
PB  - AMER SOC PLANT BIOLOGISTS
SN  - 10404651
KW  - BRASSICACEAE PHYLOGENY
KW  - ARABIDOPSIS-THALIANA
KW  - RECENT HYBRIDIZATION
KW  - FALSE FLAX
KW  - SATIVA
KW  - CONSEQUENCES
KW  - SEQUENCE
KW  - CHROMOTHRIPSIS
KW  - POLYPLOIDY
KW  - PLANTS
UR  - http://www.plantcell.org/content/31/11/2596
L2  - http://www.plantcell.org/content/31/11/2596
N2  - Complexes of diploid and polyploid species have formed frequently during the evolution of land plants. In false flax (Camelina sativa), an important hexaploid oilseed crop closely related to Arabidopsis (Arabidopsis thaliana), the putative parental species as well as the origin of other Camelina species remained unknown. By using bacterial artificial chromosome-based chromosome painting, genomic in situ hybridization, and multi-gene phylogenetics, we aimed to elucidate the origin and evolution of the polyploid complex. Genomes of diploid camelinas (Camelina hispida, n = 7; Camelina laxa, n = 6; and Camelina neglecta, n = 6) originated from an ancestral n = 7 genome. The allotetraploid genome of Camelina rumelica (n = 13, (NH)-H-6) arose from hybridization between diploids related to C. neglecta (n = 6, N-6) and C. hispida (n = 7, H), and the N subgenome has undergone a substantial post-polyploid fractionation. The allohexaploid genomes of C. sativa and Camelina microcarpa (n = 20, (NNH)-N-6-H-7) originated through hybridization between an auto-allotetraploid C. neglecta-like genome (n = 13, (NN7)-N-6) and C. hispida (n = 7, H), and the three subgenomes have remained stable overall since the genome merger. Remarkably, the ancestral and diploid Camelina genomes were shaped by complex chromosomal rearrangements, resembling those associated with human disorders and resulting in the origin of genome-specific shattered chromosomes.
ER  -

MANDÁKOVÁ, Terezie, Milan POUCH, J.R. BROCK, I.A. AL-SHEHBAZ and Martin LYSÁK. Origin and Evolution of Diploid and Allopolyploid Camelina Genomes Were Accompanied by Chromosome Shattering. \textit{Plant Cell}. ROCKVILLE: AMER SOC PLANT BIOLOGISTS, 2019, vol.~31, No~11, p.~2596-2612. ISSN~1040-4651. Available from: https://dx.doi.org/10.1105/tpc.19.00366.

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