TROJÁK, Matej, David ŠAFRÁNEK, Lukrécia MERTOVÁ and Luboš BRIM. eBCSgen: A Software Tool for Biochemical Space Language. Online. In Abate A., Petrov T., Wolf V. 18th International Conference on Computational Methods in Systems Biology, CMSB 2020. LNBI 12314. Neuveden: Springer, 2020, p. 356-361. ISBN 978-3-030-60326-7. Available from: https://dx.doi.org/10.1007/978-3-030-60327-4_20.
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Basic information
Original name eBCSgen: A Software Tool for Biochemical Space Language
Authors TROJÁK, Matej (703 Slovakia, belonging to the institution), David ŠAFRÁNEK (203 Czech Republic, guarantor, belonging to the institution), Lukrécia MERTOVÁ (703 Slovakia, belonging to the institution) and Luboš BRIM (203 Czech Republic, belonging to the institution).
Edition LNBI 12314. Neuveden, 18th International Conference on Computational Methods in Systems Biology, CMSB 2020, p. 356-361, 6 pp. 2020.
Publisher Springer
Other information
Original language English
Type of outcome Proceedings paper
Field of Study 10201 Computer sciences, information science, bioinformatics
Confidentiality degree is not subject to a state or trade secret
Publication form electronic version available online
WWW URL
Impact factor Impact factor: 0.402 in 2005
RIV identification code RIV/00216224:14330/20:00114395
Organization unit Faculty of Informatics
ISBN 978-3-030-60326-7
ISSN 0302-9743
Doi http://dx.doi.org/10.1007/978-3-030-60327-4_20
Keywords in English rule-based modelling; parameter synthesis; static analysis; Galaxy tool
Tags firank_B
Tags International impact, Reviewed
Changed by Changed by: doc. RNDr. David Šafránek, Ph.D., učo 3159. Changed: 15/4/2021 11:52.
Abstract
eBCSgen is a tool for development and analysis of models written in Biochemical Space Language (BCSL). BCSL is a rule-based language for biological systems designed to combine compact description with a specific level of abstraction which makes it accessible to users from life sciences. Currently, eBCSgen represents the only tool completely supporting BCSL. It has the form of a command line interface which is integrated into Galaxy – a web-based bioinformatics platform automating data-driven and model-based analysis pipelines
Links
GA18-00178S, research and development projectName: Diskrétní bifurkační analýza reaktivních systémů
Investor: Czech Science Foundation
MUNI/A/1050/2019, interní kód MUName: Rozsáhlé výpočetní systémy: modely, aplikace a verifikace IX (Acronym: SV-FI MAV IX)
Investor: Masaryk University, Category A
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