eBCSgen: A Software Tool for Biochemical Space Language

D 2020

eBCSgen: A Software Tool for Biochemical Space Language

TROJÁK, Matej, David ŠAFRÁNEK, Lukrécia MERTOVÁ and Luboš BRIM

Basic information

Original name

eBCSgen: A Software Tool for Biochemical Space Language

Authors

TROJÁK, Matej (703 Slovakia, belonging to the institution), David ŠAFRÁNEK (203 Czech Republic, guarantor, belonging to the institution), Lukrécia MERTOVÁ (703 Slovakia, belonging to the institution) and Luboš BRIM (203 Czech Republic, belonging to the institution)

Edition

LNBI 12314. Neuveden, 18th International Conference on Computational Methods in Systems Biology, CMSB 2020, p. 356-361, 6 pp. 2020

Publisher

Springer

Other information

Language

English

Type of outcome

Stať ve sborníku

Field of Study

10201 Computer sciences, information science, bioinformatics

Confidentiality degree

není předmětem státního či obchodního tajemství

Publication form

electronic version available online

References:

URL

Impact factor

Impact factor: 0.402 in 2005

RIV identification code

RIV/00216224:14330/20:00114395

Organization unit

Faculty of Informatics

ISBN

978-3-030-60326-7

ISSN

DOI

http://dx.doi.org/10.1007/978-3-030-60327-4_20

Keywords in English

rule-based modelling; parameter synthesis; static analysis; Galaxy tool

Abstract

V originále

eBCSgen is a tool for development and analysis of models written in Biochemical Space Language (BCSL). BCSL is a rule-based language for biological systems designed to combine compact description with a specific level of abstraction which makes it accessible to users from life sciences. Currently, eBCSgen represents the only tool completely supporting BCSL. It has the form of a command line interface which is integrated into Galaxy – a web-based bioinformatics platform automating data-driven and model-based analysis pipelines

Links

GA18-00178S, research and development project

Name: Diskrétní bifurkační analýza reaktivních systémů

Investor: Czech Science Foundation

MUNI/A/1050/2019, interní kód MU

Name: Rozsáhlé výpočetní systémy: modely, aplikace a verifikace IX (Acronym: SV-FI MAV IX)

Investor: Masaryk University, Category A

Citovat

TROJÁK, Matej, David ŠAFRÁNEK, Lukrécia MERTOVÁ and Luboš BRIM. eBCSgen: A Software Tool for Biochemical Space Language. Online. In Abate A., Petrov T., Wolf V. 18th International Conference on Computational Methods in Systems Biology, CMSB 2020. LNBI 12314. Neuveden: Springer, 2020, p. 356-361. ISBN 978-3-030-60326-7. Available from: https://dx.doi.org/10.1007/978-3-030-60327-4_20.

@inproceedings{1687203,
   author = {Troják, Matej and Šafránek, David and Mertová, Lukrécia and Brim, Luboš},
   address = {Neuveden},
   booktitle = {18th International Conference on Computational Methods in Systems Biology, CMSB 2020},
   doi = {http://dx.doi.org/10.1007/978-3-030-60327-4_20},
   edition = {LNBI 12314},
   editor = {Abate A., Petrov T., Wolf V.},
   keywords = {rule-based modelling; parameter synthesis; static analysis; Galaxy tool},
   howpublished = {elektronická verze "online"},
   language = {eng},
   location = {Neuveden},
   isbn = {978-3-030-60326-7},
   pages = {356-361},
   publisher = {Springer},
   title = {eBCSgen: A Software Tool for Biochemical Space Language},
   url = {https://doi.org/10.1007/978-3-030-60327-4_20},
   year = {2020}
}

TY  - JOUR
ID  - 1687203
AU  - Troják, Matej - Šafránek, David - Mertová, Lukrécia - Brim, Luboš
PY  - 2020
TI  - eBCSgen: A Software Tool for Biochemical Space Language
PB  - Springer
CY  - Neuveden
SN  - 9783030603267
KW  - rule-based modelling
KW  - parameter synthesis
KW  - static analysis
KW  - Galaxy tool
UR  - https://doi.org/10.1007/978-3-030-60327-4_20
N2  - eBCSgen is a tool for development and analysis of models written in Biochemical Space Language (BCSL). BCSL is a rule-based language for biological systems designed to combine compact description with a specific level of abstraction which makes it accessible to users from life sciences. Currently, eBCSgen represents the only tool completely supporting BCSL. It has the form of a command line interface which is integrated into Galaxy – a web-based bioinformatics platform automating data-driven and model-based analysis pipelines
ER  -

TROJÁK, Matej, David ŠAFRÁNEK, Lukrécia MERTOVÁ and Luboš BRIM. eBCSgen: A Software Tool for Biochemical Space Language. Online. In Abate A., Petrov T., Wolf V. \textit{18th International Conference on Computational Methods in Systems Biology, CMSB 2020}. LNBI 12314. Neuveden: Springer, 2020, p.~356-361. ISBN~978-3-030-60326-7. Available from: https://dx.doi.org/10.1007/978-3-030-60327-4\_{}20.

Detailed Information on Publication Record