JURÁSEK, Miroslav, Jitender KUMAR, Petra PACLÍKOVÁ, Alka Kumari JADAUN, Konstantinos TRIPSIANES, Vítězslav BRYJA and Robert VÁCHA. Phosphorylation-induced changes in the PDZ domain of Dishevelled 3. Scientific Reports. NATURE PUBLISHING GROUP, 2021, vol. 11, No 1, p. "1484", 14 pp. ISSN 2045-2322. Available from: https://dx.doi.org/10.1038/s41598-020-79398-5.
Other formats:   BibTeX LaTeX RIS
Basic information
Original name Phosphorylation-induced changes in the PDZ domain of Dishevelled 3
Authors JURÁSEK, Miroslav (203 Czech Republic, belonging to the institution), Jitender KUMAR (356 India, belonging to the institution), Petra PACLÍKOVÁ (203 Czech Republic, belonging to the institution), Alka Kumari JADAUN (356 India, belonging to the institution), Konstantinos TRIPSIANES (300 Greece, belonging to the institution), Vítězslav BRYJA (203 Czech Republic, belonging to the institution) and Robert VÁCHA (203 Czech Republic, belonging to the institution).
Edition Scientific Reports, NATURE PUBLISHING GROUP, 2021, 2045-2322.
Other information
Original language English
Type of outcome Article in a journal
Field of Study 10608 Biochemistry and molecular biology
Country of publisher Germany
Confidentiality degree is not subject to a state or trade secret
WWW URL
Impact factor Impact factor: 4.996
RIV identification code RIV/00216224:14740/21:00118888
Organization unit Central European Institute of Technology
Doi http://dx.doi.org/10.1038/s41598-020-79398-5
UT WoS 000609782400005
Keywords in English HUMAN PHOSPHATASE HPTP1E; PARTICLE MESH EWALD; PROTEIN INTERACTIONS; LIGAND RECOGNITION; PAR-6 PDZ; BINDING; DYNAMICS; REVEALS; COMPLEX; MODES
Tags CF BIC, CF NMR, rivok
Tags International impact, Reviewed
Changed by Changed by: Mgr. Marie Šípková, DiS., učo 437722. Changed: 20/2/2023 08:18.
Abstract
The PDZ domain of Dishevelled 3 protein belongs to a highly abundant protein recognition motif which typically binds short C-terminal peptides. The affinity of the PDZ towards the peptides could be fine-tuned by a variety of post-translation modifications including phosphorylation. However, how phosphorylations affect the PDZ structure and its interactions with ligands remains elusive. Combining molecular dynamics simulations, NMR titration, and biological experiments, we explored the role of previously reported phosphorylation sites and their mimetics in the Dishevelled PDZ domain. Our observations suggest three major roles for phosphorylations: (1) acting as an on/off PDZ binding switch, (2) allosterically affecting the binding groove, and (3) influencing the secondary binding site. Our simulations indicated that mimetics had similar but weaker effects, and the effects of distinct sites were non-additive. This study provides insight into the Dishevelled regulation by PDZ phosphorylation. Furthermore, the observed effects could be used to elucidate the regulation mechanisms in other PDZ domains.
Links
GA17-11571S, research and development projectName: Amfifilní peptidy na fosfolipidových membránách
Investor: Czech Science Foundation
GA18-17658S, research and development projectName: Odhalení tajemství signální dráhy WNT analýzou struktury proteinu Dishevelled
Investor: Czech Science Foundation
LM2015043, research and development projectName: Česká infrastruktura pro integrativní strukturní biologii (Acronym: CIISB)
Investor: Ministry of Education, Youth and Sports of the CR
LM2015085, research and development projectName: CERIT Scientific Cloud (Acronym: CERIT-SC)
Investor: Ministry of Education, Youth and Sports of the CR, CERIT Scientific Cloud
LM2018127, research and development projectName: Česká infrastruktura pro integrativní strukturní biologii (Acronym: CIISB)
Investor: Ministry of Education, Youth and Sports of the CR
LQ1601, research and development projectName: CEITEC 2020 (Acronym: CEITEC2020)
Investor: Ministry of Education, Youth and Sports of the CR
MUNI/G/0739/2017, interní kód MUName: Pushing the limits in automated NMR structure determination using a single 4D NOESY spectrum and machine learning methods
Investor: Masaryk University, INTERDISCIPLINARY - Interdisciplinary research projects
MUNI/G/1100/2016, interní kód MUName: Computational chemistry for Wnt signaling pathway
Investor: Masaryk University, INTERDISCIPLINARY - Interdisciplinary research projects
90042, large research infrastructuresName: CESNET II
90070, large research infrastructuresName: IT4Innovations
PrintDisplayed: 24/7/2024 18:19