| BARTAS, Martin, Pratik GOSWAMI, Matej LEXA, Jiří ČERVEŇ, Adriana VOLNÁ, Miroslav FOJTA, Vaclav BRAZDA and Petr PEČINKA. Letter to the Editor: Significant mutation enrichment in inverted repeat sites of new SARS-CoV-2 strains. Briefings in Bioinformatics. Oxford University Press, 2021, vol. 22, No 5, p. "bbab129", 17 pp. ISSN 1467-5463. Available from: https://dx.doi.org/10.1093/bib/bbab129. |
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@article{1755027,
author = {Bartas, Martin and Goswami, Pratik and Lexa, Matej and Červeň, Jiří and Volná, Adriana and Fojta, Miroslav and Brazda, Vaclav and Pečinka, Petr},
article_number = {5},
doi = {http://dx.doi.org/10.1093/bib/bbab129},
keywords = {SARS-CoV-2; mutations; inverted repeats},
language = {eng},
issn = {1467-5463},
journal = {Briefings in Bioinformatics},
title = {Letter to the Editor: Significant mutation enrichment in inverted repeat sites of new SARS-CoV-2 strains},
url = {https://doi.org/10.1093/bib/bbab129},
volume = {22},
year = {2021}
}
TY - JOUR
ID - 1755027
AU - Bartas, Martin - Goswami, Pratik - Lexa, Matej - Červeň, Jiří - Volná, Adriana - Fojta, Miroslav - Brazda, Vaclav - Pečinka, Petr
PY - 2021
TI - Letter to the Editor: Significant mutation enrichment in inverted repeat sites of new SARS-CoV-2 strains
JF - Briefings in Bioinformatics
VL - 22
IS - 5
SP - "bbab129"
EP - "bbab129"
PB - Oxford University Press
SN - 14675463
KW - SARS-CoV-2
KW - mutations
KW - inverted repeats
UR - https://doi.org/10.1093/bib/bbab129
N2 - In a recently published paper, we have found that SARS-CoV-2 hot-spot mutations are significantly associated with inverted repeat loci and CG dinucleotides (Goswami, Bartas et al., 2020). However, fast-spreading strains with new mutations (so-called mink farm mutations, England mutations, and Japan mutations) have been recently described. We used the new datasets to check the positioning of mutation sites in genomes of the new SARS-CoV-2 strains. Using an open-access Palindrome analyzer tool we found mutations in these new strains to be significantly enriched in inverted repeat loci.
ER -
BARTAS, Martin, Pratik GOSWAMI, Matej LEXA, Jiří ČERVEŇ, Adriana VOLNÁ, Miroslav FOJTA, Vaclav BRAZDA and Petr PEČINKA. Letter to the Editor: Significant mutation enrichment in inverted repeat sites of new SARS-CoV-2 strains. \textit{Briefings in Bioinformatics}. Oxford University Press, 2021, vol.~22, No~5, p.~''bbab129'', 17 pp. ISSN~1467-5463. Available from: https://dx.doi.org/10.1093/bib/bbab129.
|
