The order of PDZ3 and TrpCage in fusion chimeras determines
their properties-a biophysical characterization

J 2021

The order of PDZ3 and TrpCage in fusion chimeras determines their properties-a biophysical characterization

BOUSOVA, K.; L. BEDNAROVA; M. ZOUHAROVA; V. VETYSKOVA; K. POSTULKOVA et. al.

Základní údaje

Originální název

The order of PDZ3 and TrpCage in fusion chimeras determines their properties-a biophysical characterization

Autoři

BOUSOVA, K.; L. BEDNAROVA; M. ZOUHAROVA; V. VETYSKOVA; K. POSTULKOVA; K. HOFBAUEROVA; O. PETRVALSKA; O. VANEK; Konstantinos TRIPSIANES a J. VONDRASEK

Vydání

Protein Science, HOBOKEN, JOHN WILEY & SONS INC, 2021, 0961-8368

Další údaje

Jazyk

angličtina

Typ výsledku

Článek v odborném periodiku

Obor

10608 Biochemistry and molecular biology

Stát vydavatele

Spojené státy

Utajení

není předmětem státního či obchodního tajemství

Odkazy

URL

Impakt faktor

Impact factor: 6.993

Kód RIV

RIV/00216224:14740/21:00119114

Organizační jednotka

Středoevropský technologický institut

DOI

https://doi.org/10.1002/pro.4107

UT WoS

000657449100001

EID Scopus

2-s2.0-85107179666

Klíčová slova anglicky

chimeras; fusion protein; protein domains; protein dynamic studies

Štítky

rivok

Příznaky

Mezinárodní význam, Recenzováno

Změněno: 21. 2. 2022 10:11, Mgr. Pavla Foltynová, Ph.D.

Anotace

V originále

Most of the structural proteins known today are composed of domains that carry their own functions while keeping their structural properties. It is supposed that such domains, when taken out of the context of the whole protein, can retain their original structure and function to a certain extent. Information on the specific functional and structural characteristics of individual domains in a new context of artificial fusion proteins may help to reveal the rules of internal and external domain communication. Moreover, this could also help explain the mechanism of such communication and address how the mutual allosteric effect plays a role in a such multi-domain protein system. The simple model system of the two-domain fusion protein investigated in this work consisted of a well-folded PDZ3 domain and an artificially designed small protein domain called Tryptophan Cage (TrpCage). Two fusion proteins with swapped domain order were designed to study their structural and functional features as well as their biophysical properties. The proteins composed of PDZ3 and TrpCage, both identical in amino acid sequence but different in composition (PDZ3-TrpCage, TrpCage-PDZ3), were studied using circualr dichroism (CD) spectrometry, analytical ultracentrifugation, and molecular dynamic simulations. The biophysical analysis uncovered different structural and denaturation properties of both studied proteins, revealing their different unfolding pathways and dynamics.

Návaznosti

GA19-03488S, projekt VaV

Název: Ovládání na dálku: Alosterická kontrola selektivity PDZ3 domény ze ZO-1 proteinu v chimerických fúzních konstruktech

Investor: Grantová agentura ČR, Working from distance: engineering allosteric control on PDZ3 domain selectivity from ZO-1 protein through chimera domain fusion

LQ1601, projekt VaV

Název: CEITEC 2020 (Akronym: CEITEC2020)

Investor: Ministerstvo školství, mládeže a tělovýchovy ČR, CEITEC 2020

Citovat

BOUSOVA, K.; L. BEDNAROVA; M. ZOUHAROVA; V. VETYSKOVA; K. POSTULKOVA; K. HOFBAUEROVA; O. PETRVALSKA; O. VANEK; Konstantinos TRIPSIANES a J. VONDRASEK. The order of PDZ3 and TrpCage in fusion chimeras determines their properties-a biophysical characterization. Protein Science. HOBOKEN: JOHN WILEY & SONS INC, 2021, roč. 30, č. 8, s. 1653-1666. ISSN 0961-8368. Dostupné z: https://doi.org/10.1002/pro.4107.

@article{1784538,
   author = {Bousova, K. and Bednarova, L. and Zouharova, M. and Vetyskova, V. and Postulkova, K. and Hofbauerova, K. and Petrvalska, O. and Vanek, O. and Tripsianes, Konstantinos and Vondrasek, J.},
   article_location = {HOBOKEN},
   article_number = {8},
   doi = {https://doi.org/10.1002/pro.4107},
   keywords = {chimeras; fusion protein; protein domains; protein dynamic studies},
   language = {eng},
   issn = {0961-8368},
   journal = {Protein Science},
   title = {The order of PDZ3 and TrpCage in fusion chimeras determines their properties-a biophysical characterization},
   url = {https://www.ncbi.nlm.nih.gov/pubmed/33969912},
   volume = {30},
   year = {2021}
}

TY  - JOUR
ID  - 1784538
AU  - Bousova, K. - Bednarova, L. - Zouharova, M. - Vetyskova, V. - Postulkova, K. - Hofbauerova, K. - Petrvalska, O. - Vanek, O. - Tripsianes, Konstantinos - Vondrasek, J.
PY  - 2021
TI  - The order of PDZ3 and TrpCage in fusion chimeras determines their properties-a biophysical characterization
JF  - Protein Science
VL  - 30
IS  - 8
SP  - 1653-1666
EP  - 1653-1666
PB  - JOHN WILEY & SONS INC
SN  - 09618368
KW  - chimeras
KW  - fusion protein
KW  - protein domains
KW  - protein dynamic studies
UR  - https://www.ncbi.nlm.nih.gov/pubmed/33969912
N2  - Most of the structural proteins known today are composed of domains that carry their own functions while keeping their structural properties. It is supposed that such domains, when taken out of the context of the whole protein, can retain their original structure and function to a certain extent. Information on the specific functional and structural characteristics of individual domains in a new context of artificial fusion proteins may help to reveal the rules of internal and external domain communication. Moreover, this could also help explain the mechanism of such communication and address how the mutual allosteric effect plays a role in a such multi-domain protein system. The simple model system of the two-domain fusion protein investigated in this work consisted of a well-folded PDZ3 domain and an artificially designed small protein domain called Tryptophan Cage (TrpCage). Two fusion proteins with swapped domain order were designed to study their structural and functional features as well as their biophysical properties. The proteins composed of PDZ3 and TrpCage, both identical in amino acid sequence but different in composition (PDZ3-TrpCage, TrpCage-PDZ3), were studied using circualr dichroism (CD) spectrometry, analytical ultracentrifugation, and molecular dynamic simulations. The biophysical analysis uncovered different structural and denaturation properties of both studied proteins, revealing their different unfolding pathways and dynamics.
ER  -

BOUSOVA, K.; L. BEDNAROVA; M. ZOUHAROVA; V. VETYSKOVA; K. POSTULKOVA; K. HOFBAUEROVA; O. PETRVALSKA; O. VANEK; Konstantinos TRIPSIANES a J. VONDRASEK. The order of PDZ3 and TrpCage in fusion chimeras determines their properties-a biophysical characterization. \textit{Protein Science}. HOBOKEN: JOHN WILEY \&{}amp; SONS INC, 2021, roč.~30, č.~8, s.~1653-1666. ISSN~0961-8368. Dostupné z: https://doi.org/10.1002/pro.4107.

Přehled o publikaci