KOZLOVSKÝ, Martin, David WIESNER and David SVOBODA. Transfer Learning in Optical Microscopy. Online. In Svoboda D., Burgos N., Wolterink J., Zhao C. Simulation and Synthesis in Medical Imaging. LNCS 12965. Neuveden: Springer, 2021, p. 77-86. ISBN 978-3-030-87591-6. Available from: https://dx.doi.org/10.1007/978-3-030-87592-3_8.
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Basic information
Original name Transfer Learning in Optical Microscopy
Authors KOZLOVSKÝ, Martin (203 Czech Republic, belonging to the institution), David WIESNER (203 Czech Republic, belonging to the institution) and David SVOBODA (203 Czech Republic, guarantor, belonging to the institution).
Edition LNCS 12965. Neuveden, Simulation and Synthesis in Medical Imaging, p. 77-86, 10 pp. 2021.
Publisher Springer
Other information
Original language English
Type of outcome Proceedings paper
Field of Study 10201 Computer sciences, information science, bioinformatics
Country of publisher Germany
Confidentiality degree is not subject to a state or trade secret
Publication form electronic version available online
WWW URL
Impact factor Impact factor: 0.402 in 2005
RIV identification code RIV/00216224:14330/21:00122077
Organization unit Faculty of Informatics
ISBN 978-3-030-87591-6
ISSN 0302-9743
Doi http://dx.doi.org/10.1007/978-3-030-87592-3_8
Keywords in English Fluorescence microscopy; Phase-contrast microscopy; GAN; Image synthesis; Machine learning
Tags cbia-web
Tags International impact, Reviewed
Changed by Changed by: RNDr. Pavel Šmerk, Ph.D., učo 3880. Changed: 23/5/2022 14:56.
Abstract
Image synthesis is nowadays a very rapidly evolving branch of deep learning. One of possible applications of image synthesis is an image-to-image translation. There is currently a lot of focus orientated to applications of image translation in medicine, mainly involving translation between different screening techniques. One of other possible use of image translation in medicine and biology is in the task of translation between various imaging techniques in modern microscopy. In this paper, we propose a novel method based on DenseNet architecture and we compare it with Pix2Pix model in the task of translation from images imaged using phase-contrast technique to fluorescence images with focus on usability for cell segmentation.
Links
MUNI/A/1108/2020, interní kód MUName: Rozsáhlé výpočetní systémy: modely, aplikace a verifikace X. (Acronym: SV-FI MAV X.)
Investor: Masaryk University
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