Detailed Information on Publication Record
2021
Mol* Viewer: modern web app for 3D visualization and analysis of large biomolecular structures
SEHNAL, David, S. BITTRICH, M. DESHPANDE, Radka SVOBODOVÁ, K. BERKA et. al.Basic information
Original name
Mol* Viewer: modern web app for 3D visualization and analysis of large biomolecular structures
Authors
SEHNAL, David (203 Czech Republic, belonging to the institution), S. BITTRICH, M. DESHPANDE, Radka SVOBODOVÁ (203 Czech Republic, guarantor, belonging to the institution), K. BERKA, V. BAZGIER, S. VELANKAR, S.K. BURLEY, Jaroslav KOČA (203 Czech Republic, belonging to the institution) and A.S. ROSE
Edition
Nucleic acids research, Oxford, Oxford University Press, 2021, 0305-1048
Other information
Language
English
Type of outcome
Článek v odborném periodiku
Field of Study
10608 Biochemistry and molecular biology
Country of publisher
United Kingdom of Great Britain and Northern Ireland
Confidentiality degree
není předmětem státního či obchodního tajemství
References:
Impact factor
Impact factor: 19.160
RIV identification code
RIV/00216224:14740/21:00122430
Organization unit
Central European Institute of Technology
UT WoS
000672775800055
Keywords in English
MOLECULAR-DYNAMICSDATABASE
Tags
Tags
International impact, Reviewed
Změněno: 31/10/2024 08:40, Ing. Monika Szurmanová, Ph.D.
Abstract
V originále
Large biomolecular structures are being determined experimentally on a daily basis using established techniques such as crystallography and electron microscopy. In addition, emerging integrative or hybrid methods (I/HM) are producing structural models of huge macromolecular machines and assemblies, sometimes containing 100s of millions of non-hydrogen atoms. The performance requirements for visualization and analysis tools delivering these data are increasing rapidly. Significant progress in developing online, web-native three-dimensional (3D) visualization tools was previously accomplished with the introduction of the LiteMol suite and NGL Viewers. Thereafter, Mol* development was jointly initiated by PDBe and RCSB PDB to combine and build on the strengths of LiteMol (developed by PDBe) and NGL (developed by RCSB PDB). The web-native Mol* Viewer enables 3D visualization and streaming of macromolecular coordinate and experimental data, together with capabilities for displaying structure quality, functional, or biological context annotations. High-performance graphics and data management allows users to simultaneously visualise up to hundreds of (superimposed) protein structures, stream molecular dynamics simulation trajectories, render cell-level models, or display huge I/HM structures. It is the primary 3D structure viewer used by PDBe and RCSB PDB. It can be easily integrated into third-party services. Mol* Viewer is open source and freely available at https://molstar.org/.
Links
EF16_013/0001777, research and development project |
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90131, large research infrastructures |
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